From 92b9ebf3ea4db128674c5e4889fd3815dbac073c Mon Sep 17 00:00:00 2001
From: Michaela Mueller <michaela.mueller@helmholtz-muenchen.de>
Date: Mon, 13 Jan 2025 18:50:58 +0100
Subject: [PATCH] add assertions for gene score columns

---
 tests/preprocessing/test_gene_scoring.py | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/tests/preprocessing/test_gene_scoring.py b/tests/preprocessing/test_gene_scoring.py
index ed815fe4..e3b26135 100644
--- a/tests/preprocessing/test_gene_scoring.py
+++ b/tests/preprocessing/test_gene_scoring.py
@@ -5,10 +5,19 @@
 
 
 def test_mouse(adata_paul15):
+
+    assert "S_score" not in adata_paul15.obs.columns
+    assert "G2M_score" not in adata_paul15.obs.columns
+    assert "phase" not in adata_paul15.obs.columns
+
     scib.pp.score_cell_cycle(
         adata_paul15,
         organism="mouse",
     )
+    assert "S_score" in adata_paul15.obs.columns
+    assert "G2M_score" in adata_paul15.obs.columns
+    assert "phase" in adata_paul15.obs.columns
+
     scib.pp.score_cell_cycle(
         adata_paul15,
         organism="mus musculus",