From cd6cf9b091b1fd626da1ff1276f48a0b2d28fabe Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Fri, 1 Nov 2024 12:12:24 +0000 Subject: [PATCH] [status] 2024-11-01 12:12:24 UTC --- README.md | 39 +++---- index.html | 316 ++++++++++++++++++++++++++++------------------------- repos.csv | 69 ++++++++---- 3 files changed, 230 insertions(+), 194 deletions(-) diff --git a/README.md b/README.md index e178a94..6210dfc 100644 --- a/README.md +++ b/README.md @@ -2,19 +2,20 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-10-31 12:11:05 UTC +2024-11-01 12:11:06 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 765 | 18 | 69 | 181 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318087) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318021) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318023) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318016) | 86e7b2 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 416 | 13 | 60 | 102 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) | 22b6e7 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 416 | 13 | 60 | 102 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 347 | 8 | 19 | 46 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545065828) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545154702) | 82248b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 347 | 8 | 19 | 46 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | -| [theislab/scib](https://github.com/theislab/scib) | 298 | 14 | 42 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/10287985783) | 5547cd | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 222 | 5 | 47 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11571008940) | 3260f8 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 222 | 5 | 47 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 222 | 5 | 47 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) | e0e081 | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 766 | 18 | 69 | 181 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318087) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318021) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318023) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318016) | 86e7b2 | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 417 | 13 | 61 | 102 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) | 22b6e7 | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 417 | 13 | 61 | 102 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 347 | 8 | 20 | 46 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545065828) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545154702) | 82248b | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 347 | 8 | 20 | 46 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | +| [theislab/scib](https://github.com/theislab/scib) | 299 | 14 | 42 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/10287985783) | 5547cd | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 222 | 5 | 46 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11619320831) | 0399b2 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 222 | 5 | 46 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 222 | 5 | 46 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11619023066) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11619023044) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11619023054) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11619023043) | 90cb1d | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 222 | 5 | 46 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) | e0e081 | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 149 | 5 | 12 | 27 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/11437005171) | 67cea1 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | @@ -27,27 +28,28 @@ GitHub Dashboard | [theislab/mubind](https://github.com/theislab/mubind) | 27 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | | [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/11446421967) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/11446421980) | 1d15b7 | -| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11604496699) | e8a37c | -| [theislab/multimil](https://github.com/theislab/multimil) | 18 | 5 | 4 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11370023712) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11370023706) | 445402 | +| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11622661790) | e8a37c | +| [theislab/multimil](https://github.com/theislab/multimil) | 18 | 5 | 4 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11370023712) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11624599035) | 445402 | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/11590146783) | 663945 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 8 | 1 | 0 | 1 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | | [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 7 | 1 | 5 | 3 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/11545114879) | 210765 | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 2 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11611526968) | bd7fed | -| [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121630) | 5fc4ad | +| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 21 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/11624630422) | c209bc | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 2 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11629017773) | 58ca12 | +| [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11624599954) | 5fc4ad | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | ## Repos without Github Actions | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1382 | 30 | 21 | 457 | -| [theislab/scarches](https://github.com/theislab/scarches) | 335 | 12 | 49 | 51 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1383 | 30 | 21 | 457 | +| [theislab/scarches](https://github.com/theislab/scarches) | 335 | 12 | 50 | 51 | | [theislab/scgen](https://github.com/theislab/scgen) | 264 | 9 | 28 | 56 | | [theislab/dca](https://github.com/theislab/dca) | 247 | 11 | 32 | 71 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 237 | 14 | 24 | 28 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 239 | 13 | 25 | 28 | | [theislab/paga](https://github.com/theislab/paga) | 206 | 10 | 23 | 33 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 192 | 7 | 108 | 23 | | [theislab/kBET](https://github.com/theislab/kBET) | 154 | 8 | 9 | 23 | @@ -109,7 +111,7 @@ GitHub Dashboard | [theislab/2019_Strunz](https://github.com/theislab/2019_Strunz) | 7 | 5 | 1 | 11 | | [theislab/2020_Mayr](https://github.com/theislab/2020_Mayr) | 7 | 6 | 0 | 8 | | [theislab/cpa-reproducibility](https://github.com/theislab/cpa-reproducibility) | 7 | 2 | 1 | 1 | -| [theislab/ehrapy-tutorials](https://github.com/theislab/ehrapy-tutorials) | 7 | 3 | 1 | 2 | +| [theislab/ehrapy-tutorials](https://github.com/theislab/ehrapy-tutorials) | 7 | 3 | 0 | 2 | | [theislab/greatpy](https://github.com/theislab/greatpy) | 7 | 3 | 4 | 0 | | [theislab/mouse_cross-condition_pancreatic_islet_atlas](https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas) | 7 | 2 | 0 | 3 | | [theislab/scachepy](https://github.com/theislab/scachepy) | 7 | 5 | 3 | 1 | @@ -122,7 +124,6 @@ GitHub Dashboard | [theislab/theislab.github.io](https://github.com/theislab/theislab.github.io) | 6 | 2 | 9 | 0 | | [theislab/trVAE_reproducibility](https://github.com/theislab/trVAE_reproducibility) | 6 | 3 | 2 | 6 | | [theislab/atlas-feature-selection-benchmark](https://github.com/theislab/atlas-feature-selection-benchmark) | 5 | 2 | 0 | 0 | -| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 21 | 1 | | [theislab/flowVI](https://github.com/theislab/flowVI) | 5 | 3 | 0 | 0 | | [theislab/InterpretableAutoencoders](https://github.com/theislab/InterpretableAutoencoders) | 5 | 4 | 0 | 0 | | [theislab/kbranches](https://github.com/theislab/kbranches) | 5 | 7 | 0 | 0 | diff --git a/index.html b/index.html index 1717d48..90721cc 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

GitHub Dashboard


-2024-10-31 12:12:13 UTC

+2024-11-01 12:12:17 UTC

@@ -74,7 +74,7 @@

GitHub Dashboard

- + @@ -86,9 +86,9 @@

GitHub Dashboard

- + - + @@ -96,9 +96,9 @@

GitHub Dashboard

- + - + @@ -107,7 +107,7 @@

GitHub Dashboard

- + @@ -117,14 +117,14 @@

GitHub Dashboard

- + - + @@ -135,16 +135,16 @@

GitHub Dashboard

- + - - + + - + @@ -153,12 +153,24 @@

GitHub Dashboard

- + + + + + + + + + + - + @@ -167,7 +179,7 @@

GitHub Dashboard

- + @@ -176,7 +188,7 @@

GitHub Dashboard

- + @@ -188,7 +200,7 @@

GitHub Dashboard

- + @@ -197,7 +209,7 @@

GitHub Dashboard

- + @@ -206,7 +218,7 @@

GitHub Dashboard

- + @@ -215,7 +227,7 @@

GitHub Dashboard

- + @@ -226,7 +238,7 @@

GitHub Dashboard

- + @@ -236,7 +248,7 @@

GitHub Dashboard

- + @@ -246,7 +258,7 @@

GitHub Dashboard

- + @@ -255,7 +267,7 @@

GitHub Dashboard

- + @@ -264,7 +276,7 @@

GitHub Dashboard

- + @@ -274,27 +286,27 @@

GitHub Dashboard

- + + - + + - + @@ -303,7 +315,7 @@

GitHub Dashboard

- + @@ -312,7 +324,7 @@

GitHub Dashboard

- + @@ -322,7 +334,7 @@

GitHub Dashboard

- + @@ -331,7 +343,7 @@

GitHub Dashboard

- + @@ -340,7 +352,7 @@

GitHub Dashboard

- + @@ -349,14 +361,23 @@

GitHub Dashboard

+ + + + + + + + + - - + + @@ -365,7 +386,7 @@

GitHub Dashboard

+ @@ -404,7 +425,7 @@

Repos without Github Actions

- + @@ -413,7 +434,7 @@

Repos without Github Actions

- + @@ -432,9 +453,9 @@

Repos without Github Actions

- - - + + + @@ -868,7 +889,7 @@

Repos without Github Actions

- + @@ -956,706 +977,699 @@

Repos without Github Actions

- - - - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/repos.csv b/repos.csv index 8d77f9f..6f5ccfe 100644 --- a/repos.csv +++ b/repos.csv @@ -46,8 +46,8 @@ theislab,batchglm,theislab/batchglm,27,3,47,9,FALSE,https://github.com/theislab/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,NA,NA,NA theislab,campa,theislab/campa,14,4,6,4,FALSE,https://github.com/theislab/campa,14,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,347,8,19,46,FALSE,https://github.com/theislab/cellrank,347,82248b266e6f3b8508c96c81b1870a65692ac82e,Parallelize CI jobs,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545065828) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545154702) -theislab,cellrank,theislab/cellrank,347,8,19,46,FALSE,https://github.com/theislab/cellrank,347,b5e9933b1440a6a0721f97b797cd9209d1812f90,"Fix adata copy (coarse transition matrix) (#1223) +theislab,cellrank,theislab/cellrank,347,8,20,46,FALSE,https://github.com/theislab/cellrank,347,82248b266e6f3b8508c96c81b1870a65692ac82e,Parallelize CI jobs,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545065828) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545154702) +theislab,cellrank,theislab/cellrank,347,8,20,46,FALSE,https://github.com/theislab/cellrank,347,b5e9933b1440a6a0721f97b797cd9209d1812f90,"Fix adata copy (coarse transition matrix) (#1223) * chore: bump ruff pre-commit hook version @@ -143,25 +143,46 @@ theislab,diffxpy,theislab/diffxpy,192,7,108,23,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,222,5,47,20,FALSE,https://github.com/theislab/ehrapy,222,3260f8f72bd8ab8ba39540e11b938250a846efd1,"[pre-commit.ci] pre-commit autoupdate (#812) - -updates: -- [github.com/astral-sh/ruff-pre-commit: v0.7.0 → v0.7.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.7.0...v0.7.1) -- [github.com/pre-commit/mirrors-mypy: v1.12.1 → v1.13.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.12.1...v1.13.0) - -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11571008940) -theislab,ehrapy,theislab/ehrapy,222,5,47,20,FALSE,https://github.com/theislab/ehrapy,222,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows +theislab,ehrapy,theislab/ehrapy,222,5,46,20,FALSE,https://github.com/theislab/ehrapy,222,0399b2d651b440cb85092e9dee1e19135e69d7f1,discourse for user q's,[![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11619320831) +theislab,ehrapy,theislab/ehrapy,222,5,46,20,FALSE,https://github.com/theislab/ehrapy,222,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) -theislab,ehrapy,theislab/ehrapy,222,5,47,20,FALSE,https://github.com/theislab/ehrapy,222,e0e081a3308add30d6ba55fcd8b28566e35e9386,Update fig1,[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) +theislab,ehrapy,theislab/ehrapy,222,5,46,20,FALSE,https://github.com/theislab/ehrapy,222,90cb1d64f89563b4a40cd07fe337cf96b81aeb2d,"miscellaneous doc enhancements (#813) + +* update submodule + +* update submodule + +* update submodule to docs/adjust-docs PR branch + +* include new external notebook + +* new icon + +* update submodule + +* zulip instead of github discussions + +* usage -> api + +* new logo + +* u. sm.",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11619023066) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11619023044) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11619023054) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11619023043) +theislab,ehrapy,theislab/ehrapy,222,5,46,20,FALSE,https://github.com/theislab/ehrapy,222,e0e081a3308add30d6ba55fcd8b28566e35e9386,Update fig1,[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA theislab,ehrapy-datasets,theislab/ehrapy-datasets,5,2,0,2,FALSE,https://github.com/theislab/ehrapy-datasets,5,e441a5d0912396064360799f10de973b377ba6a5,"Merge pull request #23 from theislab/diabetes-update change diabetes dataset doc",[![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) theislab,ehrapy-reproducibility,theislab/ehrapy-reproducibility,2,1,1,0,FALSE,https://github.com/theislab/ehrapy-reproducibility,2,NA,NA,NA theislab,ehrapy-site,theislab/ehrapy-site,1,2,0,0,FALSE,https://github.com/theislab/ehrapy-site,1,NA,NA,NA -theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,7,3,1,2,FALSE,https://github.com/theislab/ehrapy-tutorials,7,NA,NA,NA -theislab,ehrdata,theislab/ehrdata,5,2,21,1,FALSE,https://github.com/theislab/ehrdata,5,NA,NA,NA +theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,7,3,0,2,FALSE,https://github.com/theislab/ehrapy-tutorials,7,NA,NA,NA +theislab,ehrdata,theislab/ehrdata,5,2,21,1,FALSE,https://github.com/theislab/ehrdata,5,c209bc98d10d18135e98f90c49d193b293447e02,"[pre-commit.ci] pre-commit autoupdate (#59) + +updates: +- [github.com/tox-dev/pyproject-fmt: 2.4.3 → v2.4.3](https://github.com/tox-dev/pyproject-fmt/compare/2.4.3...v2.4.3) +- [github.com/astral-sh/ruff-pre-commit: v0.7.0 → v0.7.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.7.0...v0.7.1) + +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/11624630422) theislab,enrichment_analysis_celltype,theislab/enrichment_analysis_celltype,9,5,0,4,FALSE,https://github.com/theislab/enrichment_analysis_celltype,9,NA,NA,NA theislab,epicardiods_analysis,theislab/epicardiods_analysis,2,2,1,0,FALSE,https://github.com/theislab/epicardiods_analysis,2,NA,NA,NA theislab,expiMap_reproducibility,theislab/expiMap_reproducibility,9,5,4,4,FALSE,https://github.com/theislab/expiMap_reproducibility,9,NA,NA,NA @@ -173,7 +194,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,9,4,0,1,FALSE,http theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) -theislab,gh-dashboard,theislab/gh-dashboard,2,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,2,bd7fedf0d8eeb6e7f569e3bf22ce015725ce6d70,[status] 2024-10-30 12:12:38 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11611526968) +theislab,gh-dashboard,theislab/gh-dashboard,2,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,2,58ca12772b46ab9a9e38d9ac13b372e13a961387,[status] 2024-10-31 12:12:19 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11629017773) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,32,2,2,0,FALSE,https://github.com/theislab/graphcompass,32,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,7,3,4,0,FALSE,https://github.com/theislab/greatpy,7,NA,NA,NA @@ -213,7 +234,7 @@ theislab,multicpa,theislab/multicpa,13,2,1,2,FALSE,https://github.com/theislab/m theislab,multicpa-reproducibility,theislab/multicpa-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/multicpa-reproducibility,0,NA,NA,NA theislab,multigrate,theislab/multigrate,15,3,7,6,FALSE,https://github.com/theislab/multigrate,15,NA,NA,NA theislab,multigrate_reproducibility,theislab/multigrate_reproducibility,2,1,0,0,FALSE,https://github.com/theislab/multigrate_reproducibility,2,NA,NA,NA -theislab,multimil,theislab/multimil,18,5,4,3,FALSE,https://github.com/theislab/multimil,18,445402e3bed1cb1bfef16ca2cdaab20a13f4d0dc,added imputation functionality,[![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11370023712) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11370023706) +theislab,multimil,theislab/multimil,18,5,4,3,FALSE,https://github.com/theislab/multimil,18,445402e3bed1cb1bfef16ca2cdaab20a13f4d0dc,added imputation functionality,[![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11370023712) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11624599035) theislab,multimil_reproducibility,theislab/multimil_reproducibility,5,3,4,0,FALSE,https://github.com/theislab/multimil_reproducibility,5,NA,NA,NA theislab,multires-consensus-clustering,theislab/multires-consensus-clustering,3,4,9,0,FALSE,https://github.com/theislab/multires-consensus-clustering,3,NA,NA,NA theislab,nbconvertR,theislab/nbconvertR,3,3,1,2,FALSE,https://github.com/theislab/nbconvertR,3,NA,NA,NA @@ -256,12 +277,12 @@ theislab,scanpy_squidpy_demo_2021,theislab/scanpy_squidpy_demo_2021,2,4,0,1,FALS theislab,scanpydoc,theislab/scanpydoc,12,6,3,6,FALSE,https://github.com/theislab/scanpydoc,12,66394590b3bc79d95a0630d4223e2fd336a45b95,"[pre-commit.ci] pre-commit autoupdate (#179) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/11590146783) -theislab,scarches,theislab/scarches,335,12,49,51,FALSE,https://github.com/theislab/scarches,335,NA,NA,NA +theislab,scarches,theislab/scarches,335,12,50,51,FALSE,https://github.com/theislab/scarches,335,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,9,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,9,NA,NA,NA theislab,scgen,theislab/scgen,264,9,28,56,FALSE,https://github.com/theislab/scgen,264,NA,NA,NA theislab,scgen-reproducibility,theislab/scgen-reproducibility,20,4,6,8,FALSE,https://github.com/theislab/scgen-reproducibility,20,NA,NA,NA -theislab,scib,theislab/scib,298,14,42,63,FALSE,https://github.com/theislab/scib,NA,5547cd1f6b24eed7499c6492bf5c1ef4e2ef9f7a,"Skip labels before loop (#394) +theislab,scib,theislab/scib,299,14,42,63,FALSE,https://github.com/theislab/scib,NA,5547cd1f6b24eed7499c6492bf5c1ef4e2ef9f7a,"Skip labels before loop (#394) * Skip labels before loop @@ -272,7 +293,7 @@ theislab,scib,theislab/scib,298,14,42,63,FALSE,https://github.com/theislab/scib, Co-authored-by: Michaela Müller <51025211+mumichae@users.noreply.github.com>",[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/10287985783) theislab,scib-pipeline,theislab/scib-pipeline,66,7,16,27,FALSE,https://github.com/theislab/scib-pipeline,66,NA,NA,NA theislab,scib-reproducibility,theislab/scib-reproducibility,54,6,4,13,FALSE,https://github.com/theislab/scib-reproducibility,54,NA,NA,NA -theislab,scvelo,theislab/scvelo,416,13,60,102,FALSE,https://github.com/theislab/scvelo,416,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281) +theislab,scvelo,theislab/scvelo,417,13,61,102,FALSE,https://github.com/theislab/scvelo,417,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281) * Move logging to dedicated module @@ -296,7 +317,7 @@ submodule, local imports do not work anymore. * Remove redundant function definition * Remove `print_passed_time`",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) -theislab,scvelo,theislab/scvelo,416,13,60,102,FALSE,https://github.com/theislab/scvelo,416,b2f31b345641efdccd39fbcb8c0beaa0014b4b88,"Update `pyproject.toml` (#1226) +theislab,scvelo,theislab/scvelo,417,13,61,102,FALSE,https://github.com/theislab/scvelo,417,b2f31b345641efdccd39fbcb8c0beaa0014b4b88,"Update `pyproject.toml` (#1226) Fix package directory.",[![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) theislab,scvelo_notebooks,theislab/scvelo_notebooks,31,2,4,13,FALSE,https://github.com/theislab/scvelo_notebooks,31,NA,NA,NA @@ -308,11 +329,11 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,4,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,765,18,69,181,FALSE,https://github.com/theislab/single-cell-best-practices,765,86e7b29ddfe80743bb92a944c0adbb58a138b742,"Update scrna_seq.md (#301) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,766,18,69,181,FALSE,https://github.com/theislab/single-cell-best-practices,766,86e7b29ddfe80743bb92a944c0adbb58a138b742,"Update scrna_seq.md (#301) Frederick not Friedrich Sanger",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318087) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318021) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318023) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318016) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,237,14,24,28,FALSE,https://github.com/theislab/single-cell-transformer-papers,237,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1382,30,21,457,FALSE,https://github.com/theislab/single-cell-tutorial,1382,NA,NA,NA +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,239,13,25,28,FALSE,https://github.com/theislab/single-cell-transformer-papers,239,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1383,30,21,457,FALSE,https://github.com/theislab/single-cell-tutorial,1383,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,1d15b73cd15568193d048521786d4aa0d00b265a,"[DEPENDABOT]: Bump networkx from 3.2.1 to 3.4.2 in /docs @@ -330,7 +351,7 @@ updated-dependencies: Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/11446421967) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/11446421980) theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,e8a37c9e78039920a0792fc04f426ab062dbbf88,"Merge pull request #321 from theislab/patch_precommit -pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11604496699) +pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11622661790) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA theislab,spapros_reproducibility,theislab/spapros_reproducibility,0,1,0,1,FALSE,https://github.com/theislab/spapros_reproducibility,0,NA,NA,NA @@ -338,7 +359,7 @@ theislab,spatial_atlas_ssl,theislab/spatial_atlas_ssl,3,2,0,0,FALSE,https://gith theislab,spatial_scog_workshop_2022,theislab/spatial_scog_workshop_2022,49,9,0,27,FALSE,https://github.com/theislab/spatial_scog_workshop_2022,49,NA,NA,NA theislab,spatialdata-db,theislab/spatialdata-db,1,1,25,0,FALSE,https://github.com/theislab/spatialdata-db,1,5fc4adeb97b7d224bcfae36275c66a8a20881b76,"Merge pull request #36 from theislab/feature/spatialdata_validator -Add SpatialDataValidator",[![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121630) +Add SpatialDataValidator",[![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11624599954) theislab,spatialdata-db-submission,theislab/spatialdata-db-submission,0,2,0,0,FALSE,https://github.com/theislab/spatialdata-db-submission,0,NA,NA,NA theislab,squidpy_reproducibility,theislab/squidpy_reproducibility,8,2,0,7,FALSE,https://github.com/theislab/squidpy_reproducibility,8,NA,NA,NA theislab,ssl_in_scg,theislab/ssl_in_scg,5,1,0,1,FALSE,https://github.com/theislab/ssl_in_scg,5,NA,NA,NA
theislab/single-cell-best-practices765766 18 69 181
theislab/scvelo416417 136061 102
theislab/scvelo416417 136061 102 b2f31b theislab/cellrank 347 81920 46 theislab/cellrank 347 81920 46 b5e993
theislab/scib298299 14 42 63 theislab/ehrapy 222 54746 203260f80399b2
theislab/ehrapy 222 54746 20 84d33c theislab/ehrapy 222 5474620 + + +90cb1d
theislab/ehrapy222546 20 e0e081
theislab/zellkonverter 149 5 67cea1
theislab/sfaira 134 8 55bcbb
theislab/sfaira 134 8 5fcf93
theislab/sfaira 134 8 ceb14c
theislab/anndata2ri 128 7 476bbd
theislab/moscot 112 3 36d93b
theislab/moscot 112 3 655e17
theislab/ncem 102 6 d03a07
theislab/graphcompass 32 2 7c4551
theislab/mubind 27 3 3f62f8
theislab/hadge 24 3 1ed105
theislab/spapros 23 3 1d15b7
theislab/spapros 23 3 13 6 - e8a37c
theislab/multimil 18 5 4 3 - 445402
theislab/geome 16 3 402a0a
theislab/scanpydoc 12 6 663945
theislab/cellrank2_reproducibility 8 1 8020e7
theislab/moscot_notebooks 7 1 210765
theislab/cellrank_notebooks 6 4 677784
theislab/ehrapy-datasets 5 2 e441a5
theislab/ehrdata52211c209bc
theislab/gh-dashboard 2 2 0 0bd7fed58ca12
theislab/spatialdata-db 25 0 - 5fc4ad
theislab/single-cell-tutorial13821383 30 21 457 theislab/scarches 335 124950 51
theislab/single-cell-transformer-papers23714242391325 28
theislab/ehrapy-tutorials 7 310 2
0
theislab/ehrdata52211
theislab/flowVI 5 3 0 0
theislab/InterpretableAutoencoders 5 4 0 0
theislab/kbranches 5 7 0 0
theislab/multimil_reproducibility 5 3 4 0
theislab/scanpy-demo-czbiohub 5 5 0 5
theislab/singlecell_proteomics 5 5 6 3
theislab/ssl_in_scg 5 1 0 1
theislab/2022_Tritschler_pancreas_cross_species 4 3 0 1
theislab/archmap 4 2 2 0
theislab/covid-perturbation 4 3 0 0
theislab/feature-attribution-sc 4 2 8 1
theislab/LODE 4 2 9 0
theislab/perturbation-metrics 4 2 1 0
theislab/cellrank_reproducibility_preprint 3 2 0 0
theislab/extended-single-cell-best-practices-container 3 4 2 1
theislab/moscot-framework_reproducibility 3 2 1 0
theislab/moscot_not 3 2 8 1
theislab/multires-consensus-clustering 3 4 9 0
theislab/nbconvertR 3 3 1 2
theislab/sc_analysis_template 3 3 0 0
theislab/spatial_atlas_ssl 3 2 0 0
theislab/task-dge-perturbation-prediction-analysis 3 2 0 0
theislab/txsim 3 2 40 0
theislab/2020_iPS_Lung_Differentiation 2 5 0 2
theislab/2021_Aliluev_Tritschler_gut_HFD 2 4 0 1
theislab/bartseq-pipeline 2 4 0 3
theislab/campa_ana 2 4 0 0
theislab/covid_macrophages_integration 2 5 0 5
theislab/ehrapy-reproducibility 2 1 1 0
theislab/epicardiods_analysis 2 2 1 0
theislab/flexible_priors 2 2 0 0
theislab/gut_lineage 2 3 0 3
theislab/HPA_reproducibility 2 3 0 1
theislab/HRCA-reproducibility 2 4 0 1
theislab/interaction-tools 2 4 0 0
theislab/LineagePulse 2 5 0 0
theislab/LungInjuryRegeneration 2 8 0 0
theislab/masterpraktikum_ssl_segmentation 2 3 0 2
theislab/moscot_benchmarks 2 2 1 0
theislab/multigrate_reproducibility 2 1 0 0
theislab/scanpy_squidpy_demo_2021 2 4 0 1
theislab/scPoli_legacy 2 5 0 0
theislab/svaeligr 2 3 0 0
theislab/tissue 2 3 0 0
theislab/2021_PRMT7_regulates_Monocyte_Extravasation 1 4 0 2
theislab/archmap_data 1 0 2 0
theislab/astrocytes_reprogramming_analysis 1 5 0 0
theislab/augurpy 1 2 10 0
theislab/autoencoderPS 1 3 0 2
theislab/bartSeq 1 5 1 5
theislab/bindome 1 3 5 1
theislab/countae 1 4 0 0
theislab/ehrapy-cli 1 3 0 0
theislab/ehrapy-site 1 2 0 0
theislab/ifcseq 1 3 0 1
theislab/MS_mv_modelling 1 2 0 1
theislab/sc_mae 1 2 0 0
theislab/tardis 1 1 0 1
theislab/tissue_reproducibility 1 3 0 0
theislab/transcription_factor_activity 1 1 5 1
theislab/unbalanced_monge_maps_single_cell 1 1 0 0
theislab/zebrafish_bipolarity 1 4 0 1
theislab/2015-grn-inference 0 2 0 0
theislab/2020_Inhibition_LTbetaR-signalling 0 4 0 3
theislab/2022_Bakhti_pancreas_Syt13 0 3 0 0
theislab/archmap_admin 0 2 0 0
theislab/archmap_doc 0 3 0 0
theislab/collideseq_reproducibility 0 2 0 0
theislab/consensus-clustering-evaluation 0 4 0 0
theislab/dali 0 7 0 1
theislab/edgepy 0 3 0 0
theislab/ELS_analysis 0 2 0 0
theislab/GoBI_single_cell 0 3 0 0
theislab/hadge-reproducibility 0 2 0 0
theislab/icml_cbw_2022_clcvae 0 3 0 0
theislab/integraph 0 2 4 0
theislab/ipsc_ipd_analysis 0 3 0 0
theislab/LungAgingAtlas 0 5 0 0
theislab/MetaMap-web 0 4 2 0
theislab/mubind-benchmark 0 2 19 0
theislab/multicpa-reproducibility 0 2 0 0
theislab/organoid_dexamethason_stimulation 0 3 0 1
theislab/pancreas-targeted_pharmacology 0 6 1 2
theislab/pdac_analysis 0 2 0 0
theislab/pertpy-reproducibility 0 2 0 0
theislab/prophet-reproducibility 0 3 0 0
theislab/reproducability_AutoGeneS 0 3 0 0
theislab/reproducibility_AutoGeneS 0 3 0 0
theislab/scanpy.org 0 7 1 0
theislab/scanpy_neighbors 0 3 0 1
theislab/scarches_notebooks 0 3 0 0
theislab/scProtVelo 0 1 0 0
theislab/sc_ketamine_analysis 0 4 0 0
theislab/sfaira-portal 0 4 2 0
theislab/sfaira-site 0 4 0 0
theislab/sfaira_benchmarks 0 3 0 0
theislab/sfaira_extension 0 3 1 0
theislab/spapros-smk 0 2 0 1
theislab/spapros_reproducibility 0 1 0 1
theislab/spatialdata-db-submission 0 2