diff --git a/README.md b/README.md index ace848c..0bef7a6 100644 --- a/README.md +++ b/README.md @@ -2,41 +2,42 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2025-01-12 12:11:07 UTC +2025-01-13 12:11:35 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 814 | 19 | 71 | 196 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532569) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532575) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532573) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532531) | 2580fa | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 421 | 13 | 60 | 104 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/12231133032) | 22b6e7 | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 816 | 19 | 71 | 197 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532569) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532575) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532573) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532531) | 2580fa | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 422 | 13 | 60 | 104 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/12231133032) | 22b6e7 | | [theislab/cellrank](https://github.com/theislab/cellrank) | 356 | 8 | 18 | 47 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 356 | 8 | 18 | 47 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12624236213) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12624325510) | bf27c9 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 356 | 8 | 18 | 47 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12738414455) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12738505984) | bf27c9 | | [theislab/scib](https://github.com/theislab/scib) | 323 | 14 | 41 | 64 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12436783802) | e614d3 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 288 | 15 | 41 | 36 | [![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12447562233) | 75797d | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 289 | 15 | 41 | 36 | [![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12447562233) | 75797d | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 254 | 5 | 44 | 22 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12636007214) | 61bd7b | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 254 | 5 | 44 | 22 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12713180998) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12713180991) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12713180997) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12713180985) | b2b8e4 | -| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 156 | 5 | 13 | 28 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/12250677013) | 8358a4 | +| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 157 | 5 | 13 | 28 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/12250677013) | 8358a4 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | | [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 130 | 7 | 13 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/12647235334) | f05094 | | [theislab/moscot](https://github.com/theislab/moscot) | 119 | 3 | 40 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/12301003048) | 29764d | +| [theislab/moscot](https://github.com/theislab/moscot) | 119 | 3 | 40 | 9 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12738428751) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12738358641) | 41c57a | | [theislab/ncem](https://github.com/theislab/ncem) | 104 | 6 | 28 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | | [theislab/graphcompass](https://github.com/theislab/graphcompass) | 34 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | -| [theislab/spapros](https://github.com/theislab/spapros) | 33 | 3 | 12 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12729302543) | 1ec08e | +| [theislab/spapros](https://github.com/theislab/spapros) | 33 | 3 | 12 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12739048157) | 1ec08e | | [theislab/spapros](https://github.com/theislab/spapros) | 33 | 3 | 12 | 7 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) | 2f6c1a | | [theislab/mubind](https://github.com/theislab/mubind) | 28 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | +| [theislab/regvelo](https://github.com/theislab/regvelo) | 21 | 2 | 0 | 1 | [![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087) | 619e02 | +| [theislab/regvelo](https://github.com/theislab/regvelo) | 21 | 2 | 0 | 1 | [![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307) | a98518 | | [theislab/multimil](https://github.com/theislab/multimil) | 20 | 5 | 6 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/12567396263) | c721ba | -| [theislab/regvelo](https://github.com/theislab/regvelo) | 20 | 2 | 0 | 1 | [![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087) | 619e02 | -| [theislab/regvelo](https://github.com/theislab/regvelo) | 20 | 2 | 0 | 1 | [![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307) | a98518 | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/12647235299) | ea7023 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 9 | 1 | 2 | 2 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 8 | 1 | 7 | 4 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12624283480) | 320930 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 8 | 1 | 7 | 4 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12738465210) | 320930 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 7 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | | [theislab/spapros-pipeline](https://github.com/theislab/spapros-pipeline) | 7 | 2 | 0 | 0 | [![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) | fe84cf | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12733284601) | 4361cd | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12746772963) | 81a9b6 | | [theislab/regvelo_reproducibility](https://github.com/theislab/regvelo_reproducibility) | 2 | 0 | 0 | 0 | [![](https://github.com/theislab/regvelo_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12651733568) [![](https://github.com/theislab/regvelo_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12651733570) | 56512e | | [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/12567397061) | 5fc4ad | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | @@ -101,6 +102,7 @@ GitHub Dashboard | [theislab/enrichment_analysis_celltype](https://github.com/theislab/enrichment_analysis_celltype) | 9 | 5 | 0 | 4 | | [theislab/expiMap_reproducibility](https://github.com/theislab/expiMap_reproducibility) | 9 | 5 | 3 | 4 | | [theislab/scatac_poisson_reproducibility](https://github.com/theislab/scatac_poisson_reproducibility) | 9 | 3 | 0 | 0 | +| [theislab/ssl_in_scg](https://github.com/theislab/ssl_in_scg) | 9 | 1 | 0 | 2 | | [theislab/trvaep](https://github.com/theislab/trvaep) | 9 | 3 | 0 | 6 | | [theislab/2020_Mayr](https://github.com/theislab/2020_Mayr) | 8 | 6 | 0 | 8 | | [theislab/ehrapy-tutorials](https://github.com/theislab/ehrapy-tutorials) | 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Repos without Github Actions

+ + + + + + + - + - + - + - + - + - + - + - + - + - - - - - - - diff --git a/repos.csv b/repos.csv index 73de73a..fc0e31c 100644 --- a/repos.csv +++ b/repos.csv @@ -136,7 +136,7 @@ theislab,cellrank,theislab/cellrank,356,8,18,47,FALSE,https://github.com/theisla * Don't run on 3.13 (numba) -* Test on `macos-15`",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12624236213) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12624325510) +* Test on `macos-15`",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12738414455) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12738505984) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,9,1,2,2,FALSE,https://github.com/theislab/cellrank2_reproducibility,9,8020e797c0afcde5ba9b8c2f0182b1c25d56f11f,"Update paper references (#64) Update references to published paper.",[![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) @@ -255,7 +255,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,10,4,0,1,FALSE,htt theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) -theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,4361cdef511bbbf294627fb6399d3516a1aa1147,[status] 2025-01-11 12:13:28 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12733284601) +theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,81a9b6225cbce09ca65906f79d3dc5676f9f5c42,[status] 2025-01-12 12:12:24 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12746772963) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,34,2,1,0,FALSE,https://github.com/theislab/graphcompass,34,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,10,3,4,0,FALSE,https://github.com/theislab/greatpy,10,NA,NA,NA @@ -278,12 +278,15 @@ theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentat theislab,moscot,theislab/moscot,119,3,40,9,FALSE,https://github.com/theislab/moscot,119,29764d40f7f0ce3d160ae901caf6bbaeada89043,"Merge pull request #748 from theislab/refactor/handle-solve-args Refactor/handle solve args",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/12301003048) +theislab,moscot,theislab/moscot,119,3,40,9,FALSE,https://github.com/theislab/moscot,119,41c57a15460198965dc3f00d708232bfc568b36c,"Merge pull request #778 from theislab/feature/move-to-neural + +Neural Updates: Move GENOTLinProblem, Update SolverOutput Class Hierarchy",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12738428751) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12738358641) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,3,2,2,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,3,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,2,NA,NA,NA theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA theislab,moscot_notebooks,theislab/moscot_notebooks,8,1,7,4,FALSE,https://github.com/theislab/moscot_notebooks,8,320930274245a1b556e34778d0054ca6e2432b1e,"Merge pull request #84 from theislab/add/birth_death_desc -describe birth death parameters",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12624283480) +describe birth death parameters",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12738465210) theislab,moslin,theislab/moslin,12,1,0,1,FALSE,https://github.com/theislab/moslin,12,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,4,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA theislab,mubind,theislab/mubind,28,3,29,0,FALSE,https://github.com/theislab/mubind,28,3f62f838470ebc499540ff54fb8d074363abd7b6,Dropbox URL (typo),[![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) @@ -313,10 +316,10 @@ theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https: theislab,prophet,theislab/prophet,27,5,3,2,FALSE,https://github.com/theislab/prophet,27,NA,NA,NA theislab,prophet-reproducibility,theislab/prophet-reproducibility,0,3,0,0,FALSE,https://github.com/theislab/prophet-reproducibility,0,NA,NA,NA theislab,pseudodynamics,theislab/pseudodynamics,39,7,0,6,FALSE,https://github.com/theislab/pseudodynamics,39,NA,NA,NA -theislab,regvelo,theislab/regvelo,20,2,0,1,FALSE,https://github.com/theislab/regvelo,20,619e025f7b811d77157dda144013ab1b86f8cb54,"Merge pull request #14 from theislab/WWXkenmo-patch-1 +theislab,regvelo,theislab/regvelo,21,2,0,1,FALSE,https://github.com/theislab/regvelo,21,619e025f7b811d77157dda144013ab1b86f8cb54,"Merge pull request #14 from theislab/WWXkenmo-patch-1 Update pyproject.toml",[![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087) -theislab,regvelo,theislab/regvelo,20,2,0,1,FALSE,https://github.com/theislab/regvelo,20,a9851861451a9af67ef40ded8f56f62957cf334e,"Merge pull request #7 from theislab/feat/update_package +theislab,regvelo,theislab/regvelo,21,2,0,1,FALSE,https://github.com/theislab/regvelo,21,a9851861451a9af67ef40ded8f56f62957cf334e,"Merge pull request #7 from theislab/feat/update_package update dependences",[![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307) theislab,regvelo_reproducibility,theislab/regvelo_reproducibility,2,0,0,0,FALSE,https://github.com/theislab/regvelo_reproducibility,2,56512e9001e4df89e16713aed0fa8ccd0cf4c017,fix wrong file name,[![](https://github.com/theislab/regvelo_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12651733568) [![](https://github.com/theislab/regvelo_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12651733570) @@ -404,7 +407,7 @@ theislab,scib,theislab/scib,323,14,41,64,FALSE,https://github.com/theislab/scib, * change default to numpy",[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12436783802) theislab,scib-pipeline,theislab/scib-pipeline,67,7,16,27,FALSE,https://github.com/theislab/scib-pipeline,67,NA,NA,NA theislab,scib-reproducibility,theislab/scib-reproducibility,56,6,4,14,FALSE,https://github.com/theislab/scib-reproducibility,56,NA,NA,NA -theislab,scvelo,theislab/scvelo,421,13,60,104,FALSE,https://github.com/theislab/scvelo,421,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281) +theislab,scvelo,theislab/scvelo,422,13,60,104,FALSE,https://github.com/theislab/scvelo,422,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281) * Move logging to dedicated module @@ -437,13 +440,13 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,4,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,814,19,71,196,FALSE,https://github.com/theislab/single-cell-best-practices,814,2580faa81d01d4e9b37b36c9de88cdce1d68f0e6,Added comma to improve readability (#312),[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532569) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532575) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532573) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532531) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,288,15,41,36,FALSE,https://github.com/theislab/single-cell-transformer-papers,288,75797db884ef3cf60e82ed4454168a26e7284637,add manuscript information to index,[![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12447562233) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,816,19,71,197,FALSE,https://github.com/theislab/single-cell-best-practices,816,2580faa81d01d4e9b37b36c9de88cdce1d68f0e6,Added comma to improve readability (#312),[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532569) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532575) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532573) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532531) +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,289,15,41,36,FALSE,https://github.com/theislab/single-cell-transformer-papers,289,75797db884ef3cf60e82ed4454168a26e7284637,add manuscript information to index,[![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12447562233) theislab,single-cell-tutorial,theislab/single-cell-tutorial,1433,30,21,468,FALSE,https://github.com/theislab/single-cell-tutorial,1433,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA theislab,spapros,theislab/spapros,33,3,12,7,FALSE,https://github.com/theislab/spapros,33,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer -adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12729302543) +adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12739048157) theislab,spapros,theislab/spapros,33,3,12,7,FALSE,https://github.com/theislab/spapros,33,2f6c1ad9fdab44d29017e268ef215d18278f56b9,prints for identifying mem issues,[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,fe84cf66cf6cf9b8fb441c74d4c004c20d1003cf,Update readme to refer to spapros smk repo,[![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA @@ -455,7 +458,7 @@ theislab,spatialdata-db,theislab/spatialdata-db,1,1,25,0,FALSE,https://github.co Add SpatialDataValidator",[![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/12567397061) theislab,spatialdata-db-submission,theislab/spatialdata-db-submission,0,2,0,0,FALSE,https://github.com/theislab/spatialdata-db-submission,0,NA,NA,NA theislab,squidpy_reproducibility,theislab/squidpy_reproducibility,8,2,0,7,FALSE,https://github.com/theislab/squidpy_reproducibility,8,NA,NA,NA -theislab,ssl_in_scg,theislab/ssl_in_scg,8,1,0,2,FALSE,https://github.com/theislab/ssl_in_scg,8,NA,NA,NA +theislab,ssl_in_scg,theislab/ssl_in_scg,9,1,0,2,FALSE,https://github.com/theislab/ssl_in_scg,9,NA,NA,NA theislab,superexacttestpy,theislab/superexacttestpy,10,2,3,0,FALSE,https://github.com/theislab/superexacttestpy,10,NA,NA,NA theislab,svaeligr,theislab/svaeligr,3,3,0,0,FALSE,https://github.com/theislab/svaeligr,3,NA,NA,NA theislab,tardis,theislab/tardis,1,1,1,2,FALSE,https://github.com/theislab/tardis,1,NA,NA,NA @@ -473,6 +476,6 @@ theislab,trvaep,theislab/trvaep,9,3,0,6,FALSE,https://github.com/theislab/trvaep theislab,txsim,theislab/txsim,3,2,40,0,FALSE,https://github.com/theislab/txsim,3,NA,NA,NA theislab,unbalanced_monge_maps_single_cell,theislab/unbalanced_monge_maps_single_cell,1,1,0,0,FALSE,https://github.com/theislab/unbalanced_monge_maps_single_cell,1,NA,NA,NA theislab,zebrafish_bipolarity,theislab/zebrafish_bipolarity,1,4,0,1,FALSE,https://github.com/theislab/zebrafish_bipolarity,1,NA,NA,NA -theislab,zellkonverter,theislab/zellkonverter,156,5,13,28,FALSE,https://github.com/theislab/zellkonverter,156,8358a40469a84aad720c0014cf5774827186ee74,"Merge pull request #133 from theislab/dependabot/github_actions/JamesIves/github-pages-deploy-action-4.7.2 +theislab,zellkonverter,theislab/zellkonverter,157,5,13,28,FALSE,https://github.com/theislab/zellkonverter,157,8358a40469a84aad720c0014cf5774827186ee74,"Merge pull request #133 from theislab/dependabot/github_actions/JamesIves/github-pages-deploy-action-4.7.2 Bump JamesIves/github-pages-deploy-action from 4.7.1 to 4.7.2",[![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/12250677013)
theislab/single-cell-best-practices814816 19 71196197 @@ -86,7 +86,7 @@

GitHub Dashboard

theislab/scvelo421422 13 60 104 8 18 47 - + bf27c9
theislab/single-cell-transformer-papers288289 15 41 36
theislab/zellkonverter156157 5 13 28 29764d
theislab/moscot1193409 +41c57a
theislab/ncem 104 6 d03a07
theislab/graphcompass 34 2 7c4551
theislab/spapros 33 3 12 7 - 1ec08e
theislab/spapros 33 3 2f6c1a
theislab/mubind 28 3 3f62f8
theislab/hadge 24 3 1ed105
theislab/multimil20563 -c721ba
theislab/regvelo2021 2 0 1
theislab/regvelo2021 2 0 1 a98518
theislab/multimil20563 +c721ba
theislab/geome 16 3 402a0a
theislab/scanpydoc 12 6 ea7023
theislab/cellrank2_reproducibility 9 1 8020e7
theislab/moscot_notebooks 8 1 7 4 320930
theislab/ehrapy-datasets 7 2 e441a5
theislab/spapros-pipeline 7 2 fe84cf
theislab/cellrank_notebooks 6 4 677784
theislab/gh-dashboard 3 2 0 04361cd81a9b6
theislab/regvelo_reproducibility 2 0 56512e
theislab/spatialdata-db 1 1 5fc4ad
theislab/idtrack 0 1 0
theislab/ssl_in_scg9102
theislab/trvaep 9 3 0 6
theislab/2020_Mayr 8 6 0 8
theislab/ehrapy-tutorials 8 3 0 1
theislab/jump-cpg0016-segmentation 8 1 2 0
theislab/ncem_benchmarks 8 4 4 2
theislab/PathReg 8 3 0 0
theislab/sc-best-practices-ce 8 8 2 3
theislab/scachepy 8 5 3 1
theislab/scCODA_reproducibility 8 5 0 1
theislab/squidpy_reproducibility 8 2 0 7
theislab/ssl_in_scg8102
theislab/tissue_tensorflow 8