diff --git a/README.md b/README.md index 02c1de9..48e64c7 100644 --- a/README.md +++ b/README.md @@ -2,42 +2,45 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-12-14 12:11:13 UTC +2024-12-15 12:11:07 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 795 | 19 | 73 | 190 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | | [theislab/scvelo](https://github.com/theislab/scvelo) | 419 | 13 | 62 | 104 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/12231133032) | 22b6e7 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 354 | 8 | 22 | 47 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12226614361) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12226711421) | 82248b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 354 | 8 | 22 | 47 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 354 | 8 | 21 | 47 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 354 | 8 | 21 | 47 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12333286746) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12333286743) | bf27c9 | | [theislab/scib](https://github.com/theislab/scib) | 317 | 14 | 41 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12184255455) | d35727 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 280 | 14 | 36 | 31 | [![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12278791230) | 7717a0 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 281 | 14 | 36 | 31 | [![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12278791230) | 7717a0 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 243 | 5 | 43 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12244570924) | 419f2b | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 243 | 5 | 43 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12115165279) | c4721f | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 154 | 5 | 13 | 28 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/12250677013) | 8358a4 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | -| [theislab/moscot](https://github.com/theislab/moscot) | 118 | 3 | 37 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/12301003048) [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12300902816) [![](https://github.com/theislab/moscot/workflows/Test%20examples/badge.svg)](https://github.com/theislab/moscot/actions/runs/12300902819) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12300902791) | 29764d | +| [theislab/moscot](https://github.com/theislab/moscot) | 118 | 3 | 36 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/12301003048) [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12300902816) [![](https://github.com/theislab/moscot/workflows/Test%20examples/badge.svg)](https://github.com/theislab/moscot/actions/runs/12300902819) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12300902791) | 29764d | | [theislab/ncem](https://github.com/theislab/ncem) | 104 | 6 | 28 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | | [theislab/graphcompass](https://github.com/theislab/graphcompass) | 34 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | -| [theislab/spapros](https://github.com/theislab/spapros) | 32 | 3 | 11 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12325664123) | 1ec08e | -| [theislab/spapros](https://github.com/theislab/spapros) | 32 | 3 | 11 | 7 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) | 2f6c1a | +| [theislab/DRVI](https://github.com/theislab/DRVI) | 33 | 1 | 2 | 3 | [![](https://github.com/theislab/DRVI/workflows/Test/badge.svg)](https://github.com/theislab/DRVI/actions/runs/12335999301) | fdc2eb | +| [theislab/spapros](https://github.com/theislab/spapros) | 32 | 3 | 12 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12334725538) | 1ec08e | +| [theislab/spapros](https://github.com/theislab/spapros) | 32 | 3 | 12 | 7 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) | 2f6c1a | | [theislab/mubind](https://github.com/theislab/mubind) | 28 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | -| [theislab/multimil](https://github.com/theislab/multimil) | 19 | 5 | 6 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/12102480050) | c721ba | +| [theislab/multimil](https://github.com/theislab/multimil) | 19 | 5 | 6 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/12336008817) | c721ba | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | +| [theislab/multigrate](https://github.com/theislab/multigrate) | 16 | 3 | 7 | 6 | [![](https://github.com/theislab/multigrate/workflows/Test/badge.svg)](https://github.com/theislab/multigrate/actions/runs/12335994639) | fd6c1a | +| [theislab/regvelo](https://github.com/theislab/regvelo) | 12 | 1 | 2 | 0 | [![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087) | 619e02 | +| [theislab/regvelo](https://github.com/theislab/regvelo) | 12 | 1 | 2 | 0 | [![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307) | a98518 | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/12252673511) | bf75f1 | -| [theislab/regvelo](https://github.com/theislab/regvelo) | 11 | 1 | 2 | 0 | [![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087) | 619e02 | -| [theislab/regvelo](https://github.com/theislab/regvelo) | 11 | 1 | 2 | 0 | [![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307) | a98518 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 9 | 1 | 1 | 2 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | | [theislab/spapros-pipeline](https://github.com/theislab/spapros-pipeline) | 7 | 2 | 0 | 0 | [![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) | fe84cf | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 6 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12329662203) | 68cd1c | -| [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/12102480774) | 5fc4ad | +| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 18 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12333190869) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12336027705) | 80acdf | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12338583721) | 1ef5e2 | +| [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/12336009745) | 5fc4ad | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | -| [theislab/troutpy](https://github.com/theislab/troutpy) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/troutpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12230881448) [![](https://github.com/theislab/troutpy/workflows/Test/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12230881443) | cd7505 | +| [theislab/troutpy](https://github.com/theislab/troutpy) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/troutpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12230881448) [![](https://github.com/theislab/troutpy/workflows/Test/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12335995037) | cd7505 | ## Repos without Github Actions @@ -56,7 +59,7 @@ GitHub Dashboard | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 104 | 5 | 12 | 24 | | [theislab/cpa](https://github.com/theislab/cpa) | 90 | 5 | 21 | 17 | | [theislab/destiny](https://github.com/theislab/destiny) | 79 | 5 | 31 | 11 | -| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 69 | 5 | 14 | 3 | +| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 70 | 5 | 14 | 3 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 66 | 7 | 16 | 28 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 57 | 6 | 6 | 8 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 55 | 6 | 4 | 13 | @@ -65,7 +68,6 @@ GitHub Dashboard | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 50 | 9 | 0 | 27 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 39 | 7 | 0 | 6 | | [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 37 | 9 | 3 | 7 | -| [theislab/DRVI](https://github.com/theislab/DRVI) | 33 | 1 | 2 | 3 | | [theislab/scArches-reproducibility](https://github.com/theislab/scArches-reproducibility) | 33 | 4 | 5 | 0 | | [theislab/scvelo_notebooks](https://github.com/theislab/scvelo_notebooks) | 32 | 2 | 4 | 13 | | [theislab/deepflow](https://github.com/theislab/deepflow) | 31 | 5 | 1 | 14 | @@ -77,7 +79,6 @@ GitHub Dashboard | [theislab/neural_organoid_atlas](https://github.com/theislab/neural_organoid_atlas) | 23 | 6 | 3 | 4 | | [theislab/scgen-reproducibility](https://github.com/theislab/scgen-reproducibility) | 23 | 4 | 6 | 9 | | [theislab/interactive_plotting](https://github.com/theislab/interactive_plotting) | 21 | 4 | 11 | 7 | -| [theislab/multigrate](https://github.com/theislab/multigrate) | 16 | 3 | 7 | 6 | | [theislab/campa](https://github.com/theislab/campa) | 14 | 4 | 6 | 4 | | [theislab/cellrank_reproducibility](https://github.com/theislab/cellrank_reproducibility) | 14 | 2 | 1 | 8 | | [theislab/DeepCollisionalCrossSection](https://github.com/theislab/DeepCollisionalCrossSection) | 14 | 5 | 1 | 6 | @@ -124,7 +125,6 @@ GitHub Dashboard | [theislab/theislab.github.io](https://github.com/theislab/theislab.github.io) | 6 | 2 | 9 | 0 | | [theislab/trVAE_reproducibility](https://github.com/theislab/trVAE_reproducibility) | 6 | 3 | 2 | 7 | | [theislab/atlas-feature-selection-benchmark](https://github.com/theislab/atlas-feature-selection-benchmark) | 5 | 2 | 0 | 0 | -| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 20 | 1 | | [theislab/flowVI](https://github.com/theislab/flowVI) | 5 | 3 | 0 | 0 | | [theislab/InterpretableAutoencoders](https://github.com/theislab/InterpretableAutoencoders) | 5 | 4 | 0 | 0 | | [theislab/kbranches](https://github.com/theislab/kbranches) | 5 | 7 | 0 | 0 | diff --git a/index.html b/index.html index 5f65ec8..9ffaee1 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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GitHub Dashboard

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GitHub Dashboard

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GitHub Dashboard

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Repos without Github Actions

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Repos without Github Actions

- - - - - - - - + - + - + - + - + - + - + - + - + - + - - - - - - - @@ -975,706 +989,699 @@

Repos without Github Actions

- - - - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/repos.csv b/repos.csv index a0a8e63..6289c53 100644 --- a/repos.csv +++ b/repos.csv @@ -12,7 +12,7 @@ theislab,2022_Tritschler_pancreas_cross_species,theislab/2022_Tritschler_pancrea theislab,AutoGeneS,theislab/AutoGeneS,57,6,6,8,FALSE,https://github.com/theislab/AutoGeneS,57,NA,NA,NA theislab,CFGen,theislab/CFGen,6,1,0,4,FALSE,https://github.com/theislab/CFGen,6,NA,NA,NA theislab,Covid_meta_analysis,theislab/Covid_meta_analysis,24,8,2,11,FALSE,https://github.com/theislab/Covid_meta_analysis,24,NA,NA,NA -theislab,DRVI,theislab/DRVI,33,1,2,3,FALSE,https://github.com/theislab/DRVI,33,NA,NA,NA +theislab,DRVI,theislab/DRVI,33,1,2,3,FALSE,https://github.com/theislab/DRVI,33,fdc2eb6d863bc05060a90e96e5a1698b340abf15,Improve docs (#8),[![](https://github.com/theislab/DRVI/workflows/Test/badge.svg)](https://github.com/theislab/DRVI/actions/runs/12335999301) theislab,DRVI_reproducibility,theislab/DRVI_reproducibility,2,3,0,1,FALSE,https://github.com/theislab/DRVI_reproducibility,2,NA,NA,NA theislab,DeepCollisionalCrossSection,theislab/DeepCollisionalCrossSection,14,5,1,6,FALSE,https://github.com/theislab/DeepCollisionalCrossSection,14,NA,NA,NA theislab,DeepRT,theislab/DeepRT,30,2,11,10,FALSE,https://github.com/theislab/DeepRT,30,NA,NA,NA @@ -46,8 +46,7 @@ theislab,batchglm,theislab/batchglm,27,3,47,9,FALSE,https://github.com/theislab/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,NA,NA,NA theislab,campa,theislab/campa,14,4,6,4,FALSE,https://github.com/theislab/campa,14,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,354,8,22,47,FALSE,https://github.com/theislab/cellrank,354,82248b266e6f3b8508c96c81b1870a65692ac82e,Parallelize CI jobs,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12226614361) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12226711421) -theislab,cellrank,theislab/cellrank,354,8,22,47,FALSE,https://github.com/theislab/cellrank,354,b5e9933b1440a6a0721f97b797cd9209d1812f90,"Fix adata copy (coarse transition matrix) (#1223) +theislab,cellrank,theislab/cellrank,354,8,21,47,FALSE,https://github.com/theislab/cellrank,354,b5e9933b1440a6a0721f97b797cd9209d1812f90,"Fix adata copy (coarse transition matrix) (#1223) * chore: bump ruff pre-commit hook version @@ -120,6 +119,19 @@ theislab,cellrank,theislab/cellrank,354,8,22,47,FALSE,https://github.com/theisla --------- Co-authored-by: Heinz-Alexander Fuetterer ",[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) +theislab,cellrank,theislab/cellrank,354,8,21,47,FALSE,https://github.com/theislab/cellrank,354,bf27c943ba4e5ed142af052da8b4c6728e8d0168,"Fix rtol for scipy iterative solver, bump version (#1237) + +* Fix rtol for sciPy iterative solver, bump version + +* Test on 3.13 + +* Try patching `.A` + +* Add 3.13 runner + +* Don't run on 3.13 (numba) + +* Test on `macos-15`",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12333286746) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12333286743) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,9,1,1,2,FALSE,https://github.com/theislab/cellrank2_reproducibility,9,8020e797c0afcde5ba9b8c2f0182b1c25d56f11f,"Update paper references (#64) Update references to published paper.",[![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) @@ -159,7 +171,49 @@ change diabetes dataset doc",[![](https://github.com/theislab/ehrapy-datasets/wo theislab,ehrapy-reproducibility,theislab/ehrapy-reproducibility,2,1,1,0,FALSE,https://github.com/theislab/ehrapy-reproducibility,2,NA,NA,NA theislab,ehrapy-site,theislab/ehrapy-site,1,2,0,0,FALSE,https://github.com/theislab/ehrapy-site,1,NA,NA,NA theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,7,3,0,1,FALSE,https://github.com/theislab/ehrapy-tutorials,7,NA,NA,NA -theislab,ehrdata,theislab/ehrdata,5,2,20,1,FALSE,https://github.com/theislab/ehrdata,5,NA,NA,NA +theislab,ehrdata,theislab/ehrdata,5,2,18,1,FALSE,https://github.com/theislab/ehrdata,5,80acdfd3937434be1d0730a7415d867bd5fcc35e,"new feature: torch dataset (#71) + +* towards first ehrdataloader + +* use of escapechar % caused concept table L2231 to fail, too many columns + +* refactor multiple unit to con instead of tensor; add test multiple unit warning + +* refactor time interval writing sql query + +* activate keyword-only in setup_variables again + +* updates and ehrdataset notebook + +* [pre-commit.ci] auto fixes from pre-commit.com hooks + +for more information, see https://pre-commit.ci + +* torch optional dependency + +* fix typo + +* add torch do doc dependencies + +* fix doc warning w/ broken link + +* fix doc warning w/ 2nd broken link + +* add omop_ml to index.md + +* fix display of links + +* add new things to api doc + +* fill placeholders w/ links + +* fix 1 more link + +* remove mimicii for now from api + +--------- + +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12333190869) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12336027705) theislab,enrichment_analysis_celltype,theislab/enrichment_analysis_celltype,9,5,0,4,FALSE,https://github.com/theislab/enrichment_analysis_celltype,9,NA,NA,NA theislab,epicardiods_analysis,theislab/epicardiods_analysis,2,2,1,0,FALSE,https://github.com/theislab/epicardiods_analysis,2,NA,NA,NA theislab,expiMap_reproducibility,theislab/expiMap_reproducibility,9,5,3,4,FALSE,https://github.com/theislab/expiMap_reproducibility,9,NA,NA,NA @@ -171,7 +225,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,10,4,0,1,FALSE,htt theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) -theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,68cd1c31a1db0f6e1297a924d914ca9fc02b7018,[status] 2024-12-13 12:12:51 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12329662203) +theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,1ef5e24b4e4df1ef36d5b5a03f118f7df542d242,[status] 2024-12-14 12:13:31 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12338583721) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,34,2,1,0,FALSE,https://github.com/theislab/graphcompass,34,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,9,3,4,0,FALSE,https://github.com/theislab/greatpy,9,NA,NA,NA @@ -191,7 +245,7 @@ theislab,jump-cpg0016-segmentation,theislab/jump-cpg0016-segmentation,8,1,2,0,FA theislab,kBET,theislab/kBET,155,8,9,23,FALSE,https://github.com/theislab/kBET,155,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentation,2,3,0,2,FALSE,https://github.com/theislab/masterpraktikum_ssl_segmentation,2,NA,NA,NA -theislab,moscot,theislab/moscot,118,3,37,9,FALSE,https://github.com/theislab/moscot,118,29764d40f7f0ce3d160ae901caf6bbaeada89043,"Merge pull request #748 from theislab/refactor/handle-solve-args +theislab,moscot,theislab/moscot,118,3,36,9,FALSE,https://github.com/theislab/moscot,118,29764d40f7f0ce3d160ae901caf6bbaeada89043,"Merge pull request #748 from theislab/refactor/handle-solve-args Refactor/handle solve args",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/12301003048) [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12300902816) [![](https://github.com/theislab/moscot/workflows/Test%20examples/badge.svg)](https://github.com/theislab/moscot/actions/runs/12300902819) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12300902791) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,3,2,2,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,3,NA,NA,NA @@ -204,11 +258,11 @@ theislab,mubind,theislab/mubind,28,3,29,0,FALSE,https://github.com/theislab/mubi theislab,mubind-benchmark,theislab/mubind-benchmark,0,2,19,0,FALSE,https://github.com/theislab/mubind-benchmark,0,NA,NA,NA theislab,multicpa,theislab/multicpa,13,2,1,2,FALSE,https://github.com/theislab/multicpa,13,NA,NA,NA theislab,multicpa-reproducibility,theislab/multicpa-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/multicpa-reproducibility,0,NA,NA,NA -theislab,multigrate,theislab/multigrate,16,3,7,6,FALSE,https://github.com/theislab/multigrate,16,NA,NA,NA +theislab,multigrate,theislab/multigrate,16,3,7,6,FALSE,https://github.com/theislab/multigrate,16,fd6c1a0978a93044e9b04a3509ceb0f7f8e22d35,pre-commit updates,[![](https://github.com/theislab/multigrate/workflows/Test/badge.svg)](https://github.com/theislab/multigrate/actions/runs/12335994639) theislab,multigrate_reproducibility,theislab/multigrate_reproducibility,3,1,0,0,FALSE,https://github.com/theislab/multigrate_reproducibility,3,NA,NA,NA theislab,multimil,theislab/multimil,19,5,6,3,FALSE,https://github.com/theislab/multimil,19,c721babcaef2f9367cf0bea5e6ed07ef422afb6b,"Merge pull request #73 from theislab/mmq2r_benchmark -Multimodal q2r",[![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/12102480050) +Multimodal q2r",[![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/12336008817) theislab,multimil_reproducibility,theislab/multimil_reproducibility,6,3,4,1,FALSE,https://github.com/theislab/multimil_reproducibility,6,NA,NA,NA theislab,multires-consensus-clustering,theislab/multires-consensus-clustering,3,4,9,0,FALSE,https://github.com/theislab/multires-consensus-clustering,3,NA,NA,NA theislab,nbconvertR,theislab/nbconvertR,3,3,1,2,FALSE,https://github.com/theislab/nbconvertR,3,NA,NA,NA @@ -216,7 +270,7 @@ theislab,ncem,theislab/ncem,104,6,28,13,FALSE,https://github.com/theislab/ncem,1 theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.com/theislab/ncem_benchmarks,8,NA,NA,NA theislab,ncem_tutorials,theislab/ncem_tutorials,12,4,6,0,FALSE,https://github.com/theislab/ncem_tutorials,12,NA,NA,NA theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,23,6,3,4,FALSE,https://github.com/theislab/neural_organoid_atlas,23,NA,NA,NA -theislab,nicheformer,theislab/nicheformer,69,5,14,3,FALSE,https://github.com/theislab/nicheformer,69,NA,NA,NA +theislab,nicheformer,theislab/nicheformer,70,5,14,3,FALSE,https://github.com/theislab/nicheformer,70,NA,NA,NA theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA theislab,paga,theislab/paga,211,10,24,33,FALSE,https://github.com/theislab/paga,211,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,6,1,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA @@ -227,10 +281,10 @@ theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https: theislab,prophet,theislab/prophet,27,6,2,2,FALSE,https://github.com/theislab/prophet,27,NA,NA,NA theislab,prophet-reproducibility,theislab/prophet-reproducibility,0,3,0,0,FALSE,https://github.com/theislab/prophet-reproducibility,0,NA,NA,NA theislab,pseudodynamics,theislab/pseudodynamics,39,7,0,6,FALSE,https://github.com/theislab/pseudodynamics,39,NA,NA,NA -theislab,regvelo,theislab/regvelo,11,1,2,0,FALSE,https://github.com/theislab/regvelo,11,619e025f7b811d77157dda144013ab1b86f8cb54,"Merge pull request #14 from theislab/WWXkenmo-patch-1 +theislab,regvelo,theislab/regvelo,12,1,2,0,FALSE,https://github.com/theislab/regvelo,12,619e025f7b811d77157dda144013ab1b86f8cb54,"Merge pull request #14 from theislab/WWXkenmo-patch-1 Update pyproject.toml",[![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087) -theislab,regvelo,theislab/regvelo,11,1,2,0,FALSE,https://github.com/theislab/regvelo,11,a9851861451a9af67ef40ded8f56f62957cf334e,"Merge pull request #7 from theislab/feat/update_package +theislab,regvelo,theislab/regvelo,12,1,2,0,FALSE,https://github.com/theislab/regvelo,12,a9851861451a9af67ef40ded8f56f62957cf334e,"Merge pull request #7 from theislab/feat/update_package update dependences",[![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307) theislab,reproducability_AutoGeneS,theislab/reproducability_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducability_AutoGeneS,0,NA,NA,NA @@ -353,15 +407,15 @@ theislab,single-cell-best-practices,theislab/single-cell-best-practices,795,19,7 * fix typo * fix typo",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,280,14,36,31,FALSE,https://github.com/theislab/single-cell-transformer-papers,280,7717a029c20fa1a6d16b0107b2df03fee4bd13aa,"Added Implementation Side (#54) +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,281,14,36,31,FALSE,https://github.com/theislab/single-cell-transformer-papers,281,7717a029c20fa1a6d16b0107b2df03fee4bd13aa,"Added Implementation Side (#54) Co-authored-by: Paul O.-P ",[![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12278791230) theislab,single-cell-tutorial,theislab/single-cell-tutorial,1417,30,21,465,FALSE,https://github.com/theislab/single-cell-tutorial,1417,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA -theislab,spapros,theislab/spapros,32,3,11,7,FALSE,https://github.com/theislab/spapros,32,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer +theislab,spapros,theislab/spapros,32,3,12,7,FALSE,https://github.com/theislab/spapros,32,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer -adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12325664123) -theislab,spapros,theislab/spapros,32,3,11,7,FALSE,https://github.com/theislab/spapros,32,2f6c1ad9fdab44d29017e268ef215d18278f56b9,prints for identifying mem issues,[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) +adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12334725538) +theislab,spapros,theislab/spapros,32,3,12,7,FALSE,https://github.com/theislab/spapros,32,2f6c1ad9fdab44d29017e268ef215d18278f56b9,prints for identifying mem issues,[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,fe84cf66cf6cf9b8fb441c74d4c004c20d1003cf,Update readme to refer to spapros smk repo,[![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA theislab,spapros_reproducibility,theislab/spapros_reproducibility,1,1,0,1,FALSE,https://github.com/theislab/spapros_reproducibility,1,NA,NA,NA @@ -369,7 +423,7 @@ theislab,spatial_atlas_ssl,theislab/spatial_atlas_ssl,3,2,0,0,FALSE,https://gith theislab,spatial_scog_workshop_2022,theislab/spatial_scog_workshop_2022,50,9,0,27,FALSE,https://github.com/theislab/spatial_scog_workshop_2022,50,NA,NA,NA theislab,spatialdata-db,theislab/spatialdata-db,1,1,25,0,FALSE,https://github.com/theislab/spatialdata-db,1,5fc4adeb97b7d224bcfae36275c66a8a20881b76,"Merge pull request #36 from theislab/feature/spatialdata_validator -Add SpatialDataValidator",[![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/12102480774) +Add SpatialDataValidator",[![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/12336009745) theislab,spatialdata-db-submission,theislab/spatialdata-db-submission,0,2,0,0,FALSE,https://github.com/theislab/spatialdata-db-submission,0,NA,NA,NA theislab,squidpy_reproducibility,theislab/squidpy_reproducibility,8,2,0,7,FALSE,https://github.com/theislab/squidpy_reproducibility,8,NA,NA,NA theislab,ssl_in_scg,theislab/ssl_in_scg,5,1,0,1,FALSE,https://github.com/theislab/ssl_in_scg,5,NA,NA,NA @@ -385,7 +439,7 @@ theislab,tissue_tensorflow,theislab/tissue_tensorflow,8,3,0,0,FALSE,https://gith theislab,trVAE,theislab/trVAE,55,6,3,12,FALSE,https://github.com/theislab/trVAE,55,NA,NA,NA theislab,trVAE_reproducibility,theislab/trVAE_reproducibility,6,3,2,7,FALSE,https://github.com/theislab/trVAE_reproducibility,6,NA,NA,NA theislab,transcription_factor_activity,theislab/transcription_factor_activity,1,1,5,1,FALSE,https://github.com/theislab/transcription_factor_activity,1,NA,NA,NA -theislab,troutpy,theislab/troutpy,0,2,0,0,FALSE,https://github.com/theislab/troutpy,0,cd75055c2ab91ef18a8ba90064cc4f1caf403ad8,first commit,[![](https://github.com/theislab/troutpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12230881448) [![](https://github.com/theislab/troutpy/workflows/Test/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12230881443) +theislab,troutpy,theislab/troutpy,0,2,0,0,FALSE,https://github.com/theislab/troutpy,0,cd75055c2ab91ef18a8ba90064cc4f1caf403ad8,first commit,[![](https://github.com/theislab/troutpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12230881448) [![](https://github.com/theislab/troutpy/workflows/Test/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12335995037) theislab,trvaep,theislab/trvaep,9,3,0,6,FALSE,https://github.com/theislab/trvaep,9,NA,NA,NA theislab,txsim,theislab/txsim,3,2,40,0,FALSE,https://github.com/theislab/txsim,3,NA,NA,NA theislab,unbalanced_monge_maps_single_cell,theislab/unbalanced_monge_maps_single_cell,1,1,0,0,FALSE,https://github.com/theislab/unbalanced_monge_maps_single_cell,1,NA,NA,NA
theislab/cellrank 354 82221 47 -82248bb5e993
theislab/cellrank 354 82221 47b5e993 +bf27c9
theislab/scib
theislab/single-cell-transformer-papers280281 14 36 31 theislab/moscot 118 33736 9 @@ -222,20 +222,29 @@

GitHub Dashboard

7c4551
theislab/DRVI33123fdc2eb
theislab/spapros 32 31112 7 - 1ec08e
theislab/spapros 32 31112 7 @@ -243,7 +252,7 @@

GitHub Dashboard

 2f6c1a
theislab/mubind 28 3 3f62f8
theislab/hadge 24 3 1ed105
theislab/multimil 19 5 6 3 - c721ba
theislab/geome 16 3 402a0a
theislab/scanpydoc126
theislab/multigrate16 37 6bf75f1fd6c1a
theislab/regvelo1112 1 2 0 619e02
theislab/regvelo1112 1 2 0 a98518
theislab/scanpydoc12636bf75f1
theislab/cellrank2_reproducibility 9 e441a5
theislab/ehrdata52181 +80acdf
theislab/gh-dashboard 3 2 0 068cd1c1ef5e2
theislab/spatialdata-db 1 1 25 0 - 5fc4ad
theislab/idtrack 0 1 ec9e9f
theislab/troutpy 0 2 0 0 - cd7505
theislab/nicheformer6970 5 14 3 7
theislab/DRVI33123
theislab/scArches-reproducibility 33 4 5 0
theislab/scvelo_notebooks 32 2 4 13
theislab/deepflow 31 5 1 14
theislab/DeepRT 30 2 11 10
theislab/batchglm 27 3 47 9
theislab/prophet 27 6 2 2
theislab/graph_abstraction 26 8 0 10
theislab/Covid_meta_analysis 24 8 2 11
theislab/neural_organoid_atlas 23 6 3 4
theislab/scgen-reproducibility 23 4 6 9
theislab/interactive_plotting 21 4 11 7
theislab/multigrate16376
theislab/campa 14 0
theislab/ehrdata52201
theislab/flowVI 5 3 0 0
theislab/InterpretableAutoencoders 5 4 0 0
theislab/kbranches 5 7 0 0
theislab/scanpy-demo-czbiohub 5 5 0 5
theislab/singlecell_proteomics 5 5 6 3
theislab/ssl_in_scg 5 1 0 1
theislab/2022_Tritschler_pancreas_cross_species 4 3 0 1
theislab/archmap 4 2 3 0
theislab/covid-perturbation 4 3 0 0
theislab/feature-attribution-sc 4 2 8 1
theislab/LODE 4 2 9 0
theislab/perturbation-metrics 4 2 1 0
theislab/task-dge-perturbation-prediction-analysis 4 2 0 1
theislab/cellrank_reproducibility_preprint 3 2 0 0
theislab/extended-single-cell-best-practices-container 3 4 2 1
theislab/moscot-framework_reproducibility 3 2 2 0
theislab/moscot_not 3 2 8 1
theislab/multigrate_reproducibility 3 1 0 0
theislab/multires-consensus-clustering 3 4 9 0
theislab/nbconvertR 3 3 1 2
theislab/sc_analysis_template 3 3 0 0
theislab/spatial_atlas_ssl 3 2 0 0
theislab/svaeligr 3 3 0 0
theislab/txsim 3 2 40 0
theislab/2020_iPS_Lung_Differentiation 2 5 0 2
theislab/2021_Aliluev_Tritschler_gut_HFD 2 4 0 1
theislab/bartseq-pipeline 2 4 0 3
theislab/campa_ana 2 4 0 0
theislab/covid_macrophages_integration 2 5 0 5
theislab/DRVI_reproducibility 2 3 0 1
theislab/ehrapy-reproducibility 2 1 1 0
theislab/epicardiods_analysis 2 2 1 0
theislab/flexible_priors 2 2 0 0
theislab/gut_lineage 2 3 0 3
theislab/HPA_reproducibility 2 3 0 1
theislab/HRCA-reproducibility 2 4 0 1
theislab/interaction-tools 2 4 0 0
theislab/LineagePulse 2 5 0 0
theislab/LungInjuryRegeneration 2 8 0 0
theislab/masterpraktikum_ssl_segmentation 2 3 0 2
theislab/moscot_benchmarks 2 2 1 0
theislab/scanpy_squidpy_demo_2021 2 4 0 1
theislab/scPoli_legacy 2 5 0 0
theislab/tissue 2 3 0 0
theislab/2021_PRMT7_regulates_Monocyte_Extravasation 1 4 0 2
theislab/archmap_data 1 0 2 0
theislab/astrocytes_reprogramming_analysis 1 5 0 0
theislab/augurpy 1 2 10 0
theislab/autoencoderPS 1 3 0 2
theislab/bartSeq 1 5 1 5
theislab/bindome 1 3 5 1
theislab/countae 1 4 0 0
theislab/ehrapy-cli 1 3 0 0
theislab/ehrapy-site 1 2 0 0
theislab/ifcseq 1 3 0 1
theislab/MS_mv_modelling 1 2 0 1
theislab/pertpy-reproducibility 1 2 0 1
theislab/sc_mae 1 2 0 0
theislab/spapros_reproducibility 1 1 0 1
theislab/tardis 1 1 0 2
theislab/tissue_reproducibility 1 3 0 0
theislab/transcription_factor_activity 1 1 5 1
theislab/unbalanced_monge_maps_single_cell 1 1 0 0
theislab/zebrafish_bipolarity 1 4 0 1
theislab/2015-grn-inference 0 2 0 0
theislab/2020_Inhibition_LTbetaR-signalling 0 4 0 3
theislab/2022_Bakhti_pancreas_Syt13 0 3 0 0
theislab/archmap_admin 0 2 0 0
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theislab/dali 0 7 0 1
theislab/edgepy 0 3 0 0
theislab/ELS_analysis 0 2 0 0
theislab/GoBI_single_cell 0 3 0 0
theislab/hadge-reproducibility 0 2 0 0
theislab/icml_cbw_2022_clcvae 0 3 0 0
theislab/integraph 0 2 4 0
theislab/ipsc_ipd_analysis 0 3 0 0
theislab/LungAgingAtlas 0 5 0 0
theislab/MetaMap-web 0 4 2 0
theislab/mubind-benchmark 0 2 19 0
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theislab/pancreas-targeted_pharmacology 0 6 1 2
theislab/pdac_analysis 0 2 0 0
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theislab/reproducibility_AutoGeneS 0 3 0 0
theislab/scanpy.org 0 7 1 0
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theislab/sfaira_benchmarks 0 3 0 0
theislab/sfaira_extension 0 3 1 0
theislab/spapros-smk 0 2 0 1
theislab/spatialdata-db-submission 0 2