diff --git a/README.md b/README.md index d49000d..e013da2 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-12-20 12:11:04 UTC +2024-12-21 12:11:06 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| @@ -10,8 +10,8 @@ GitHub Dashboard | [theislab/scvelo](https://github.com/theislab/scvelo) | 420 | 13 | 62 | 104 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/12231133032) | 22b6e7 | | [theislab/cellrank](https://github.com/theislab/cellrank) | 354 | 8 | 21 | 47 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | | [theislab/cellrank](https://github.com/theislab/cellrank) | 354 | 8 | 21 | 47 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12343592364) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12343688075) | bf27c9 | -| [theislab/scib](https://github.com/theislab/scib) | 318 | 14 | 41 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12184255455) | d35727 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 285 | 15 | 38 | 34 | [![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12422004674) | 33bdee | +| [theislab/scib](https://github.com/theislab/scib) | 319 | 14 | 40 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12436783802) [![](https://github.com/theislab/scib/workflows/Test/badge.svg)](https://github.com/theislab/scib/actions/runs/12436783809) | e614d3 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 285 | 15 | 38 | 35 | [![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12422004674) | 33bdee | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 244 | 5 | 44 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12391531595) | 228ac1 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 244 | 5 | 44 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12115165279) | c4721f | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 153 | 5 | 13 | 28 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/12250677013) | 8358a4 | @@ -22,22 +22,22 @@ GitHub Dashboard | [theislab/moscot](https://github.com/theislab/moscot) | 119 | 3 | 35 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/12301003048) | 29764d | | [theislab/ncem](https://github.com/theislab/ncem) | 104 | 6 | 28 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | | [theislab/graphcompass](https://github.com/theislab/graphcompass) | 34 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | -| [theislab/spapros](https://github.com/theislab/spapros) | 32 | 3 | 12 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12423839920) | 1ec08e | -| [theislab/spapros](https://github.com/theislab/spapros) | 32 | 3 | 12 | 7 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) | 2f6c1a | +| [theislab/spapros](https://github.com/theislab/spapros) | 32 | 3 | 13 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12440970516) | 1ec08e | +| [theislab/spapros](https://github.com/theislab/spapros) | 32 | 3 | 13 | 7 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) | 2f6c1a | | [theislab/mubind](https://github.com/theislab/mubind) | 28 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | | [theislab/multimil](https://github.com/theislab/multimil) | 19 | 5 | 6 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/12336008817) | c721ba | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | | [theislab/multigrate](https://github.com/theislab/multigrate) | 16 | 3 | 7 | 6 | [![](https://github.com/theislab/multigrate/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multigrate/actions/runs/12416445673) [![](https://github.com/theislab/multigrate/workflows/Test/badge.svg)](https://github.com/theislab/multigrate/actions/runs/12416445707) | bd56d2 | -| [theislab/regvelo](https://github.com/theislab/regvelo) | 13 | 1 | 3 | 1 | [![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087) | 619e02 | -| [theislab/regvelo](https://github.com/theislab/regvelo) | 13 | 1 | 3 | 1 | [![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307) | a98518 | +| [theislab/regvelo](https://github.com/theislab/regvelo) | 13 | 1 | 1 | 1 | [![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087) | 619e02 | +| [theislab/regvelo](https://github.com/theislab/regvelo) | 13 | 1 | 1 | 1 | [![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307) | a98518 | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/12368693074) | f5f0a2 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 9 | 1 | 1 | 2 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | | [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 8 | 1 | 7 | 4 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12354253700) | 320930 | | [theislab/spapros-pipeline](https://github.com/theislab/spapros-pipeline) | 7 | 2 | 0 | 0 | [![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) | fe84cf | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 6 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12431054716) | 4f6a6e | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12444968754) | 597b55 | | [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/12336009745) | 5fc4ad | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | | [theislab/troutpy](https://github.com/theislab/troutpy) | 0 | 1 | 1 | 0 | [![](https://github.com/theislab/troutpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12413514836) [![](https://github.com/theislab/troutpy/workflows/Test/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12413514832) | 538649 | @@ -58,18 +58,18 @@ GitHub Dashboard | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 104 | 5 | 12 | 24 | | [theislab/cpa](https://github.com/theislab/cpa) | 90 | 5 | 21 | 17 | | [theislab/destiny](https://github.com/theislab/destiny) | 79 | 5 | 31 | 11 | -| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 71 | 5 | 14 | 3 | +| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 72 | 5 | 14 | 3 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 67 | 7 | 16 | 27 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 57 | 6 | 6 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 56 | 6 | 3 | 12 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 55 | 6 | 4 | 13 | -| [theislab/scTab](https://github.com/theislab/scTab) | 52 | 4 | 1 | 9 | +| [theislab/scTab](https://github.com/theislab/scTab) | 53 | 4 | 1 | 9 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 50 | 9 | 0 | 27 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 39 | 7 | 0 | 6 | | [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 37 | 9 | 3 | 7 | -| [theislab/DRVI](https://github.com/theislab/DRVI) | 34 | 1 | 2 | 3 | +| [theislab/DRVI](https://github.com/theislab/DRVI) | 34 | 1 | 3 | 3 | | [theislab/scArches-reproducibility](https://github.com/theislab/scArches-reproducibility) | 33 | 4 | 5 | 0 | -| [theislab/scvelo_notebooks](https://github.com/theislab/scvelo_notebooks) | 32 | 2 | 5 | 13 | +| [theislab/scvelo_notebooks](https://github.com/theislab/scvelo_notebooks) | 33 | 2 | 5 | 13 | | [theislab/deepflow](https://github.com/theislab/deepflow) | 31 | 5 | 1 | 14 | | [theislab/DeepRT](https://github.com/theislab/DeepRT) | 30 | 2 | 11 | 10 | | [theislab/batchglm](https://github.com/theislab/batchglm) | 27 | 3 | 47 | 9 | @@ -115,11 +115,11 @@ GitHub Dashboard | [theislab/cpa-reproducibility](https://github.com/theislab/cpa-reproducibility) | 7 | 2 | 1 | 1 | | [theislab/ehrapy-tutorials](https://github.com/theislab/ehrapy-tutorials) | 7 | 3 | 0 | 1 | | [theislab/mouse_cross-condition_pancreatic_islet_atlas](https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas) | 7 | 2 | 0 | 4 | +| [theislab/pancreatic-endocrinogenesis](https://github.com/theislab/pancreatic-endocrinogenesis) | 7 | 3 | 0 | 7 | | [theislab/CFGen](https://github.com/theislab/CFGen) | 6 | 1 | 0 | 4 | | [theislab/disent](https://github.com/theislab/disent) | 6 | 3 | 0 | 0 | | [theislab/intercode](https://github.com/theislab/intercode) | 6 | 3 | 1 | 1 | | [theislab/multimil_reproducibility](https://github.com/theislab/multimil_reproducibility) | 6 | 3 | 4 | 1 | -| [theislab/pancreatic-endocrinogenesis](https://github.com/theislab/pancreatic-endocrinogenesis) | 6 | 3 | 0 | 7 | | [theislab/sfaira_tutorials](https://github.com/theislab/sfaira_tutorials) | 6 | 4 | 4 | 2 | | [theislab/theislab.github.io](https://github.com/theislab/theislab.github.io) | 6 | 2 | 9 | 0 | | [theislab/trVAE_reproducibility](https://github.com/theislab/trVAE_reproducibility) | 6 | 3 | 2 | 7 | diff --git a/index.html b/index.html index 4343b6b..f77270f 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

GitHub Dashboard


-2024-12-20 12:12:23 UTC

+2024-12-21 12:13:13 UTC

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GitHub Dashboard

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+ + + + + + + - + - + - + - - - - - - - diff --git a/repos.csv b/repos.csv index 139c9be..87b885b 100644 --- a/repos.csv +++ b/repos.csv @@ -12,7 +12,7 @@ theislab,2022_Tritschler_pancreas_cross_species,theislab/2022_Tritschler_pancrea theislab,AutoGeneS,theislab/AutoGeneS,57,6,6,8,FALSE,https://github.com/theislab/AutoGeneS,57,NA,NA,NA theislab,CFGen,theislab/CFGen,6,1,0,4,FALSE,https://github.com/theislab/CFGen,6,NA,NA,NA theislab,Covid_meta_analysis,theislab/Covid_meta_analysis,24,8,2,11,FALSE,https://github.com/theislab/Covid_meta_analysis,24,NA,NA,NA -theislab,DRVI,theislab/DRVI,34,1,2,3,FALSE,https://github.com/theislab/DRVI,34,NA,NA,NA +theislab,DRVI,theislab/DRVI,34,1,3,3,FALSE,https://github.com/theislab/DRVI,34,NA,NA,NA theislab,DRVI_reproducibility,theislab/DRVI_reproducibility,2,3,0,1,FALSE,https://github.com/theislab/DRVI_reproducibility,2,NA,NA,NA theislab,DeepCollisionalCrossSection,theislab/DeepCollisionalCrossSection,14,5,1,6,FALSE,https://github.com/theislab/DeepCollisionalCrossSection,14,NA,NA,NA theislab,DeepRT,theislab/DeepRT,30,2,11,10,FALSE,https://github.com/theislab/DeepRT,30,NA,NA,NA @@ -197,7 +197,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,10,4,0,1,FALSE,htt theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) -theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,4f6a6eb72fa03f99c262f3a67158485226b266db,[status] 2024-12-19 12:12:53 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12431054716) +theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,597b55b8db3cb04ee49d90e053bb963dd301a75c,[status] 2024-12-20 12:12:31 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12444968754) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,34,2,1,0,FALSE,https://github.com/theislab/graphcompass,34,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,9,3,4,0,FALSE,https://github.com/theislab/greatpy,9,NA,NA,NA @@ -244,21 +244,21 @@ theislab,ncem,theislab/ncem,104,6,28,13,FALSE,https://github.com/theislab/ncem,1 theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.com/theislab/ncem_benchmarks,8,NA,NA,NA theislab,ncem_tutorials,theislab/ncem_tutorials,12,4,6,0,FALSE,https://github.com/theislab/ncem_tutorials,12,NA,NA,NA theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,24,6,3,4,FALSE,https://github.com/theislab/neural_organoid_atlas,24,NA,NA,NA -theislab,nicheformer,theislab/nicheformer,71,5,14,3,FALSE,https://github.com/theislab/nicheformer,71,NA,NA,NA +theislab,nicheformer,theislab/nicheformer,72,5,14,3,FALSE,https://github.com/theislab/nicheformer,72,NA,NA,NA theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA theislab,paga,theislab/paga,211,10,24,33,FALSE,https://github.com/theislab/paga,211,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,6,1,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA -theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,6,3,0,7,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,6,NA,NA,NA +theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,7,3,0,7,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,7,NA,NA,NA theislab,pdac_analysis,theislab/pdac_analysis,0,2,0,0,FALSE,https://github.com/theislab/pdac_analysis,0,NA,NA,NA theislab,pertpy-reproducibility,theislab/pertpy-reproducibility,1,2,0,1,FALSE,https://github.com/theislab/pertpy-reproducibility,1,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https://github.com/theislab/perturbation-metrics,4,NA,NA,NA theislab,prophet,theislab/prophet,27,6,2,2,FALSE,https://github.com/theislab/prophet,27,NA,NA,NA theislab,prophet-reproducibility,theislab/prophet-reproducibility,0,3,0,0,FALSE,https://github.com/theislab/prophet-reproducibility,0,NA,NA,NA theislab,pseudodynamics,theislab/pseudodynamics,39,7,0,6,FALSE,https://github.com/theislab/pseudodynamics,39,NA,NA,NA -theislab,regvelo,theislab/regvelo,13,1,3,1,FALSE,https://github.com/theislab/regvelo,13,619e025f7b811d77157dda144013ab1b86f8cb54,"Merge pull request #14 from theislab/WWXkenmo-patch-1 +theislab,regvelo,theislab/regvelo,13,1,1,1,FALSE,https://github.com/theislab/regvelo,13,619e025f7b811d77157dda144013ab1b86f8cb54,"Merge pull request #14 from theislab/WWXkenmo-patch-1 Update pyproject.toml",[![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087) -theislab,regvelo,theislab/regvelo,13,1,3,1,FALSE,https://github.com/theislab/regvelo,13,a9851861451a9af67ef40ded8f56f62957cf334e,"Merge pull request #7 from theislab/feat/update_package +theislab,regvelo,theislab/regvelo,13,1,1,1,FALSE,https://github.com/theislab/regvelo,13,a9851861451a9af67ef40ded8f56f62957cf334e,"Merge pull request #7 from theislab/feat/update_package update dependences",[![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307) theislab,reproducability_AutoGeneS,theislab/reproducability_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducability_AutoGeneS,0,NA,NA,NA @@ -272,7 +272,7 @@ theislab,scCODA_reproducibility,theislab/scCODA_reproducibility,8,5,0,1,FALSE,ht theislab,scPoli_legacy,theislab/scPoli_legacy,2,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,2,NA,NA,NA theislab,scPoli_reproduce,theislab/scPoli_reproduce,13,3,2,4,FALSE,https://github.com/theislab/scPoli_reproduce,13,NA,NA,NA theislab,scProtVelo,theislab/scProtVelo,0,1,0,0,FALSE,https://github.com/theislab/scProtVelo,0,NA,NA,NA -theislab,scTab,theislab/scTab,52,4,1,9,FALSE,https://github.com/theislab/scTab,52,NA,NA,NA +theislab,scTab,theislab/scTab,53,4,1,9,FALSE,https://github.com/theislab/scTab,53,NA,NA,NA theislab,sc_analysis_template,theislab/sc_analysis_template,3,3,0,0,FALSE,https://github.com/theislab/sc_analysis_template,3,NA,NA,NA theislab,sc_ketamine_analysis,theislab/sc_ketamine_analysis,0,4,0,0,FALSE,https://github.com/theislab/sc_ketamine_analysis,0,NA,NA,NA theislab,sc_mae,theislab/sc_mae,1,2,0,0,FALSE,https://github.com/theislab/sc_mae,1,NA,NA,NA @@ -293,34 +293,55 @@ theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://gi theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,9,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,9,NA,NA,NA theislab,scgen,theislab/scgen,276,9,28,56,FALSE,https://github.com/theislab/scgen,276,NA,NA,NA theislab,scgen-reproducibility,theislab/scgen-reproducibility,23,4,6,9,FALSE,https://github.com/theislab/scgen-reproducibility,23,NA,NA,NA -theislab,scib,theislab/scib,318,14,41,63,FALSE,https://github.com/theislab/scib,NA,d35727305501f905424f19a0e95b61dcda61c460,"Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows (#415) +theislab,scib,theislab/scib,319,14,40,63,FALSE,https://github.com/theislab/scib,NA,e614d358fd73b47ed7136f9e95ed9b19820ea6af,"Optimise PC regression (#408) -* Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows - -Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.1.7. -- [Release notes](https://github.com/actions/download-artifact/releases) -- [Commits](https://github.com/actions/download-artifact/compare/v3...v4.1.7) - ---- -updated-dependencies: -- dependency-name: actions/download-artifact - dependency-type: direct:production -... - -Signed-off-by: dependabot[bot] - -* update actions/upload-artifact to v4.1.7 - -* fix version to v4 - -* unique naming for pytest artifacts - ---------- - -Signed-off-by: dependabot[bot] -Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> -Co-authored-by: Michaela Müller <51025211+mumichae@users.noreply.github.com> -Co-authored-by: Michaela Mueller ",[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12184255455) +* add numpy linreg function and use in pcr + +* allow configuring linreg method for pcr methods + +* simplify numpy linreg function + +* add tests for different linreg implementations + +* set PCA recomputation to False by default + +* use multithreading for linear regression and add tdqm + +* add durations to test command + +* add durations flag to pytest command + +* add min duration flag + +* add comments for ThreadPoolExecutore run + +* allow to specify n_threads and linreg algorithm + +* add keywords to cell cycle scoring + +* add multiple threading in pcr test + +* use nanmean + +* test cell cycle score with numpy linreg + +* use more memory-efficient implementation of ThreadPool + +* fix cases where there are no residuals + +* allow to configure svd_solver + +* use multiple linear regression and remove multithreading approach + +* use pcr score from numpy exact OLS implementation + +* remove testing code + +* include old pcr implementation + +* Update scib/metrics/cell_cycle.py + +* change default to numpy",[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12436783802) [![](https://github.com/theislab/scib/workflows/Test/badge.svg)](https://github.com/theislab/scib/actions/runs/12436783809) theislab,scib-pipeline,theislab/scib-pipeline,67,7,16,27,FALSE,https://github.com/theislab/scib-pipeline,67,NA,NA,NA theislab,scib-reproducibility,theislab/scib-reproducibility,55,6,4,13,FALSE,https://github.com/theislab/scib-reproducibility,55,NA,NA,NA theislab,scvelo,theislab/scvelo,420,13,62,104,FALSE,https://github.com/theislab/scvelo,420,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281) @@ -347,7 +368,7 @@ submodule, local imports do not work anymore. * Remove redundant function definition * Remove `print_passed_time`",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/12231133032) -theislab,scvelo_notebooks,theislab/scvelo_notebooks,32,2,5,13,FALSE,https://github.com/theislab/scvelo_notebooks,32,NA,NA,NA +theislab,scvelo_notebooks,theislab/scvelo_notebooks,33,2,5,13,FALSE,https://github.com/theislab/scvelo_notebooks,33,NA,NA,NA theislab,sfaira,theislab/sfaira,135,8,167,11,FALSE,https://github.com/theislab/sfaira,135,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) theislab,sfaira,theislab/sfaira,135,8,167,11,FALSE,https://github.com/theislab/sfaira,135,5fcf932c44613e6bf4063ef3075ad6062bf5d9a1,round restored counts in some affected datasets,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) theislab,sfaira,theislab/sfaira,135,8,167,11,FALSE,https://github.com/theislab/sfaira,135,ceb14c946f699c38d18a32192b76d4639caf845e,fix download links,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) @@ -383,15 +404,15 @@ theislab,single-cell-best-practices,theislab/single-cell-best-practices,803,19,7 * fix typo * fix typo",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,285,15,38,34,FALSE,https://github.com/theislab/single-cell-transformer-papers,285,33bdee152dea48d0b1ad29e8f81652d7076509f8,"add mcBERT (closes #39) (#65) +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,285,15,38,35,FALSE,https://github.com/theislab/single-cell-transformer-papers,285,33bdee152dea48d0b1ad29e8f81652d7076509f8,"add mcBERT (closes #39) (#65) Co-authored-by: Artur Szałata ",[![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12422004674) theislab,single-cell-tutorial,theislab/single-cell-tutorial,1421,30,21,466,FALSE,https://github.com/theislab/single-cell-tutorial,1421,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA -theislab,spapros,theislab/spapros,32,3,12,7,FALSE,https://github.com/theislab/spapros,32,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer +theislab,spapros,theislab/spapros,32,3,13,7,FALSE,https://github.com/theislab/spapros,32,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer -adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12423839920) -theislab,spapros,theislab/spapros,32,3,12,7,FALSE,https://github.com/theislab/spapros,32,2f6c1ad9fdab44d29017e268ef215d18278f56b9,prints for identifying mem issues,[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) +adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12440970516) +theislab,spapros,theislab/spapros,32,3,13,7,FALSE,https://github.com/theislab/spapros,32,2f6c1ad9fdab44d29017e268ef215d18278f56b9,prints for identifying mem issues,[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,fe84cf66cf6cf9b8fb441c74d4c004c20d1003cf,Update readme to refer to spapros smk repo,[![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA theislab,spapros_reproducibility,theislab/spapros_reproducibility,1,1,0,1,FALSE,https://github.com/theislab/spapros_reproducibility,1,NA,NA,NA
theislab/scib318319 144140 63d35727 +e614d3
theislab/single-cell-transformer-papers 285 15 383435 33bdee
theislab/spapros 32 31213 7 - 1ec08e
theislab/spapros 32 31213 7 @@ -300,7 +301,7 @@

GitHub Dashboard

theislab/regvelo 13 131 1 619e02 theislab/regvelo 13 131 1 a98518 2 0 04f6a6e597b55
theislab/spatialdata-db
theislab/nicheformer7172 5 14 3
theislab/scTab5253 4 1 9 theislab/DRVI 34 123 3
theislab/scvelo_notebooks3233 2 5 13 4
theislab/pancreatic-endocrinogenesis7307
theislab/CFGen 6 1 0 4
theislab/disent 6 3 0 0
theislab/intercode 6 3 1 1
theislab/multimil_reproducibility 6 3 4 1
theislab/pancreatic-endocrinogenesis6307
theislab/sfaira_tutorials 6