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DESCRIPTION
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Package: Capr
Title: Cohort Definition Application Programming
Version: 2.0.8
Authors@R: c(
person("Martin", "Lavallee", , "[email protected]", role = c("aut", "cre")),
person("Adam", "Black", , "[email protected]", role = c("aut")),
person("Guus", "Wilmink", , "[email protected]", role = c("aut"))
)
Description: Provides a programming language for defining cohort definitions in R to use in studies for Observational
Health Data Sciences and Informatics (OHDSI). The functions in 'Capr' allow for the programmatic creation of
OHDSI concept sets and cohorts that can be serialized to 'OHDSI' compatible 'json' files or to 'OHDSI-SQL'.
'Capr' functions can be used to create, save, and load component parts to a cohort definition allowing
R programmers to easily reuse cohort logic. 'Capr' provides tools to create a large number of OHDSI cohorts
while also helping bridge the gap between human readable descriptions of clinical phenotypes
and their computational implementation.
License: Apache License (>= 2)
URL: https://ohdsi.github.io/Capr/, https://github.com/OHDSI/Capr/
BugReports: https://github.com/OHDSI/Capr/issues/
Encoding: UTF-8
RoxygenNote: 7.3.1
Depends:
R (>= 3.5.0)
Imports:
magrittr (>= 1.5.0),
jsonlite,
methods,
purrr (>= 1.0.1),
rlang,
dplyr,
tidyr,
checkmate,
tibble,
readr,
stringr,
glue,
cli,
digest,
fs,
lubridate,
DBI,
DatabaseConnector,
SqlRender,
generics,
CirceR,
codetools,
readr,
Suggests:
testthat (>= 3.0.0),
knitr,
rmarkdown
VignetteBuilder: knitr
Config/testthat/edition: 3
Collate:
'Capr.R'
'conceptSet.R'
'attributes-concept.R'
'attributes-dateAdjustment.R'
'attributes-logic.R'
'query.R'
'window.R'
'criteria.R'
'attributes-nested.R'
'attributes-op.R'
'exit.R'
'cohort.R'
'collectCodesetId.R'
'conceptSets.R'
'countOccurrences.R'
'isStandard.R'
'isStandardCS.R'
'table_linked_to_concept_field.R'
'utils.R'