Skip to content

WGCNA input file #1

@zhangpicb

Description

@zhangpicb

Hi @liqingbioinfo

Thanks for the great tool AT-TWAS!

The WGCNA step, GTEX_WB_Trial3_V1.R ,WGCNA input file is missing in the repo. how to get this file.

femData = fread("Whole-Blood-670-Mean-above1-13k-log2-MinMax_wgcna.csv", header = TRUE, sep = ",");

And I have a question about input file. why not use Whole_blood.v8.normalized_expression.bed.gz,directly downloaded from GTEx portal.

Thanks in advanced!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions