Software.md

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List of software we developed

• Bioinformatics software

  • MACS

  • HMMRATAC

  • MAESTRO

  • RetrieverApp

• Data anaylysis Pipelines

  • ChIP-seq analysis pipeline

  • ATAC-seq analysis pipeline

  • RNA-seq analysis pipeline

  • scRNA-seq pipeline

  • scATAC-seq pipeline

  • ChIP/ATAC-seq + RNA-seq integration pipeline

  • scRNA+scATAC-seq integration pipeline

• Web services

  • Cistrome

• Database

  • Cistrome DB

List of software we usually use