diff --git a/jcvi/assembly/hic.py b/jcvi/assembly/hic.py index 2f24f402..1e787c19 100644 --- a/jcvi/assembly/hic.py +++ b/jcvi/assembly/hic.py @@ -733,6 +733,7 @@ def heatmap(args): logger.debug("Resolution set to %d", resolution) # Load the matrix A = np.load(npyfile) + total_bins = header["total_bins"] # Select specific submatrix if contig: @@ -741,7 +742,6 @@ def heatmap(args): contig_end = contig_start + contig_size A = A[contig_start:contig_end, contig_start:contig_end] else: - total_bins = header["total_bins"] A = A[:total_bins, :total_bins] # Convert seqids to positions for each group