Data and R code to support Lee et al., (2021). Spatial connectivity in mosquito-borne disease models: a systematic review of methods and assumptions. J. R. Soc. Interface. (https://doi.org/10.1098/rsif.2021.0096).
To cite this repo:
Sophie A Lee. (2021). Data and R code to accompany 'Spatial connectivity in mosquito-borne disease models: a systematic review of methods and assumptions' (version v1.0.0). Zenodo. http://doi.org/10.5281/zenodo.4706866
This systematic review synthesises the spatial methods used to model mosquito-borne diseases, their spatial connectivity assumptions, and the data used to inform spatial model components.
A description of each file and folder is provided below:
Figures.R: R script used to create figures from the manuscript and supplementary materials.
Supp_Table.R: R script to create Supplementary table 1.
centroid_function.R: R script to obtain the coordinates of a polygon centroid, sourced in Figures.R.
data: a folder containing data extracted from papers included in the systematic review and example connectivity data used to create Figure 3.
output: a folder to save the output generated by the R scripts.
The analysis was performed using R version 3.6.2 (2019-12-12).
For any issues with the code please contact Sophie Lee.