NAMESPACE

# Generated by roxygen2: do not edit by hand

export("fqName<-")
export(FastpData)
export(FastpDataList)
export(FastqcData)
export(FastqcDataList)
export(estGcDistn)
export(fqName)
export(gcAvail)
export(getGC)
export(importNgsLogs)
export(importSJ)
export(isCompressed)
export(mData)
export(maxAdapterContent)
export(overRep2Fasta)
export(plotAdapterContent)
export(plotAlignmentSummary)
export(plotAssemblyStats)
export(plotBaseQuals)
export(plotDupLevels)
export(plotFastqcPCA)
export(plotGcContent)
export(plotInsertSize)
export(plotKmers)
export(plotNContent)
export(plotOverrep)
export(plotReadTotals)
export(plotSeqContent)
export(plotSeqLengthDistn)
export(plotSeqQuals)
export(plotSummary)
export(pwf)
export(readTotals)
export(summariseOverrep)
export(writeHtmlReport)
exportMethods("[")
exportMethods("fqName<-")
exportMethods(estGcDistn)
exportMethods(fqName)
exportMethods(fqcVersion)
exportMethods(gcAvail)
exportMethods(getColours)
exportMethods(getGC)
exportMethods(getModule)
exportMethods(getSummary)
exportMethods(mData)
exportMethods(overRep2Fasta)
exportMethods(path)
exportMethods(plotAdapterContent)
exportMethods(plotBaseQuals)
exportMethods(plotDupLevels)
exportMethods(plotFastqcPCA)
exportMethods(plotGcContent)
exportMethods(plotInsertSize)
exportMethods(plotKmers)
exportMethods(plotNContent)
exportMethods(plotOverrep)
exportMethods(plotReadTotals)
exportMethods(plotSeqContent)
exportMethods(plotSeqLengthDistn)
exportMethods(plotSeqQuals)
exportMethods(plotSummary)
exportMethods(setAlpha)
exportMethods(setColours)
exportMethods(summariseOverrep)
import(ggplot2)
import(lifecycle)
import(patchwork)
import(tibble)
importFrom(BiocGenerics,width)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,letterFrequency)
importFrom(Biostrings,readDNAStringSet)
importFrom(Biostrings,subseq)
importFrom(dplyr,across)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,group_by)
importFrom(dplyr,if_all)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_at)
importFrom(dplyr,mutate_if)
importFrom(dplyr,reframe)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(dplyr,vars)
importFrom(forcats,fct_inorder)
importFrom(forcats,fct_rev)
importFrom(ggdendro,segment)
importFrom(ggdendro,theme_dendro)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,hcl.colors)
importFrom(grDevices,rgb)
importFrom(grid,unit)
importFrom(jsonlite,fromJSON)
importFrom(jsonlite,validate)
importFrom(lubridate,as_datetime)
importFrom(lubridate,dhours)
importFrom(lubridate,dminutes)
importFrom(lubridate,dseconds)
importFrom(lubridate,parse_date_time)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(plotly,ggplotly)
importFrom(plotly,layout)
importFrom(plotly,plotly_empty)
importFrom(plotly,subplot)
importFrom(rlang,"!!")
importFrom(rlang,":=")
importFrom(rlang,sym)
importFrom(scales,comma)
importFrom(scales,label_percent)
importFrom(scales,percent)
importFrom(scales,percent_format)
importFrom(stats,as.dendrogram)
importFrom(stats,as.formula)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,lm.fit)
importFrom(stats,na.omit)
importFrom(stats,order.dendrogram)
importFrom(stats,prcomp)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(stats,weighted.mean)
importFrom(stringr,str_count)
importFrom(stringr,str_extract)
importFrom(stringr,str_extract_all)
importFrom(stringr,str_remove_all)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split)
importFrom(stringr,str_split_fixed)
importFrom(stringr,str_subset)
importFrom(stringr,str_to_title)
importFrom(stringr,str_trim)
importFrom(tibble,as_tibble_row)
importFrom(tidyr,complete)
importFrom(tidyr,nest)
importFrom(tidyr,nesting)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,unnest)
importFrom(tidyselect,all_of)
importFrom(tidyselect,any_of)
importFrom(tidyselect,contains)
importFrom(tidyselect,ends_with)
importFrom(tidyselect,everything)
importFrom(tidyselect,one_of)
importFrom(tidyselect,starts_with)
importFrom(utils,unzip)
importFrom(zoo,na.locf)
importMethodsFrom(BiocGenerics,path)