pr-validation #2289

	name: pr-validation

	# Controls when the workflow will run
	on:
	workflow_dispatch:
	push:
	branches:
	- '**'
	pull_request:
	schedule:
	# Run every week day at 3h30 UTC
	- cron: '30 3 * * 1,2,3,4,5'

	# A workflow run is made up of one or more jobs that can run sequentially or in parallel
	jobs:
	run_tests:
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	include:
	- os: ubuntu-latest
	python: "3.11"
	- os: ubuntu-latest
	python: "3.12"
	- os: ubuntu-latest
	python: "3.13"
	- os: ubuntu-latest
	python: "3.13"
	pip-flags: "--pre"
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python }}
	- name: Install the latest version of uv
	uses: astral-sh/setup-uv@v6
	with:
	version: "latest"
	- name: Install dependencies
	run: \|
	uv sync --extra doc --extra dev
	- name: Lint with ruff
	run: \|
	uv run ruff check --fix --exit-non-zero-on-fix pydeseq2
	- name: Format with ruff
	run: \|
	uv run ruff format --check pydeseq2
	- name: Type check with mypy
	run: \|
	uv run mypy -p pydeseq2
	- name: Test with pytest
	run: \|
	uv run coverage run -m pytest
	- name: Generate code coverage report
	run: \|
	uv run coverage html
	- name: Upload coverage artifacts
	uses: actions/upload-artifact@v4
	with:
	name: test-coverage-report-${{ strategy.job-index }}
	path: htmlcov/
	retention-days: 20
	- name: Compile docs
	run: \|
	uv pip freeze > requirements.txt
	cd docs
	uv run make clean html
	- name: Build package
	run: \|
	uv build

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