Merge branch 'main' into dokken/refactor-visibility

Author: jorgensd

.cspell_dict.txt

@@ -25,22 +25,26 @@ DOLFINx
 elastodynamics
 electrodiffusive
 Empagliflozin
+endfeet
 ffian
 finsberg
 Finsberg
 Forsch
 Fouilloux
 geometriesx
 Gjerde
+gliovascular
 glymphatic
 gotranx
 Graphnics
 Haubner
+herlyng
 howpublished
 htmlcov
 idealised
 importlib
 Ingeborg
+insilico
 Jørgen
 jorgensd
 Jupyterbook
@@ -71,7 +75,9 @@ odeigah
 oneline
 orcid
 peaceiris
+periarterial
 perivascular
+perivenous
 postprocess
 poulain
 Pycodestyle
@@ -80,10 +86,13 @@ pypi
 pyproject
 pytest
 Ragan
+Ratbrain
+riseth
 saetra
 Sætra
 scientificcomputing
 scifem
+silico
 Simcardems
 Simula
 Stankelbein
@@ -92,5 +101,6 @@ Valnes
 vasp
 venv
 yamamoto
+vinje
 zapf
 Zenodo

docs/datasets.md

@@ -0,0 +1,28 @@
+# Datasets
+
+This page contains a list of relevant datasets for Scientific Computing.
+
+## Brain MRI and Meshes
+
+- **[Gonzo Dataset](https://zenodo.org/records/14266867)**
+  Human Brain MRI Data of CSF Tracer Evolution Over 72h For Data-Integrated Simulations.
+
+- **[Ratbrain mesh](https://zenodo.org/records/8138343)**
+  Mesh files for rat brain simulations.
+
+- **[MRI2FEM data set](https://zenodo.org/records/4899120)**
+  Data set supporting the MRI2FEM book and workflows.
+
+## Solute Transport and Mechanics
+
+- **[Human brain solute transport meshes](https://zenodo.org/records/8036492)**
+  Example meshes for 'Human brain solute transport quantified by glymphatic MRI-informed biophysics during sleep and sleep deprivation'.
+
+- **[Perivascular space meshes](https://zenodo.org/records/4629927)**
+  Mesh files for idealized and image-based periarterial and perivenous spaces.
+
+- **[Mechanisms behind PVS flow](https://zenodo.org/records/3890133)**
+  Data related to mechanisms behind flow in perivascular spaces.
+
+- **[Geometrically reduced PVS flow](https://zenodo.org/records/5729458)**
+  Data for geometrically reduced modelling of pulsatile flow.

docs/myst.yml

@@ -10,17 +10,15 @@ project:
     - Numerical Analysis
     - High Performance Computing
     - Simulation
-  authors:
-    - Henrik Finsberg
-    - Jørgen Dokken
+
   github: https://github.com/scientificcomputing/scientificcomputing.github.io
   # To autogenerate a Table of Contents, run "jupyter book init --write-toc"
   toc:
     - file: index.md
     - title: Publication list
       children:
         - file: repositories.md
-
+        - file: datasets.md
     - title: Guidelines for papers with code
       children:
         - file: index.md