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![PyPI](https://img.shields.io/pypi/v/bartab)
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[![Open in Spaces](https://huggingface.co/datasets/huggingface/badges/resolve/main/open-in-hf-spaces-md-dark.svg)](https://huggingface.co/spaces/scbirlab/bartab)
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<img src="docs/source/_static/logo.svg" width="200">
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**bartab** estimates relative fitness from sequencing-based pooled competition experiments.
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It is designed for experiments where barcoded strains, guides, mutants, or constructs are grown together, sampled over time, and quantified by NGS read counts or UMI counts. `bartab` estimates the fitness of each barcode relative to a reference barcode, usually WT, using either spike-in normalisation or measured culture growth.

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