Hey! I could fix these and open a PR if you're okay with it. Otherwise, looking to see these fixed in the next release
frq_list = get_frac_exprs(
sce = sce,
sample_id = sample_id, celltype_id = celltype_id, group_id = group_id,
batches = batches,
min_cells = min_cells,
fraction_cutoff = fraction_cutoff, min_sample_prop = min_sample_prop)
Warning in S4Vectors:::anyMissing(runValue(x_seqnames)) :
'S4Vectors:::anyMissing()' is deprecated.
Use 'anyNA()' instead.
See help("Deprecated")
Warning in S4Vectors:::anyMissing(runValue(strand(x))) :
'S4Vectors:::anyMissing()' is deprecated.
Use 'anyNA()' instead.
See help("Deprecated")
abundance_expression_info = process_abundance_expression_info(
sce = sce,
sample_id = sample_id, group_id = group_id, celltype_id = celltype_id,
min_cells = min_cells,
senders_oi = senders_oi, receivers_oi = receivers_oi,
lr_network = lr_network,
batches = batches,
frq_list = frq_list,
abundance_info = abundance_info)
Warning in S4Vectors:::anyMissing(runValue(x_seqnames)) :
'S4Vectors:::anyMissing()' is deprecated.
Use 'anyNA()' instead.
See help("Deprecated")
Warning in S4Vectors:::anyMissing(runValue(strand(x))) :
'S4Vectors:::anyMissing()' is deprecated.
Use 'anyNA()' instead.
See help("Deprecated")
Warning in S4Vectors:::anyMissing(runValue(x_seqnames)) :
'S4Vectors:::anyMissing()' is deprecated.
Use 'anyNA()' instead.
See help("Deprecated")
Warning in S4Vectors:::anyMissing(runValue(strand(x))) :
'S4Vectors:::anyMissing()' is deprecated.
Use 'anyNA()' instead.
See help("Deprecated")
Hey! I could fix these and open a PR if you're okay with it. Otherwise, looking to see these fixed in the next release