beditor/pyproject.toml at master · rraadd88/beditor · GitHub

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[project]
name = "beditor"
version = "0.1.0"
description = "Add your description here"
readme = "README.md"
requires-python = ">=3.9"
dependencies = [
        # 'roux'
        "roux>=0.1.1",
        ## requirements from roux
        # 'seaborn',
        # 'numpy>=1.17.3',
        # 'pandas>=0.25.3',
        # 'pyyaml>=5.1',
        # 'matplotlib>=2.2',
        "papermill",
        "biopython",
        "regex",  # expanded regex package
        "scipy",
        "pyensembl>=2.2.9",
        "pysam>=0.22.0",  # to convert sam to bam
        ## workflow
        "papermill",
        "argh",  # for command line
        # aes
        "jinja2",  # for pandas dataframe formatting
        "ipywidgets",  # for tqdm
        # 'app':[
        # "importlib-metadata==4.13.0", # to avoid celery error
        # ],
        #     ],
        # 'viz':[
        "igv-notebook>=0.5.2",
        "pyfaidx>=0.8.0",  ## for indexing fasta file
    ]

[dependency-groups]
dev = [
    "ipykernel>=6.29.5",
]