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Installation

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Benoit Ballester edited this page Oct 6, 2019 · 12 revisions

Git pull code

git pull [email protected]:remap-cisreg/remap-pipeline.git

Conda install

Docker images install

Docker images are found on Docker Hub.

Repository list on DockerHub

Pull all necessary images

docker pull benoitballester/remap_bowtie2:latest
docker pull benoitballester/remap_aria2:latest
docker pull benoitballester/remap_phantompeakqualtools:latest
docker pull benoitballester/remap_trimgalore:latest
docker pull benoitballester/remap_bedtools:latest
docker pull benoitballester/remap_samtools:latest

If you use singularity, you will need to convert them into singularity images. Please refer to Sylabs.io

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