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test_run.sh
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#!/bin/bash
if [ -e Havec.out ];
then
# cleaning the existing output
rm -rf output/
rm -rf result_analyzer/all_results/
mkdir result_analyzer/all_results/
# run the havec with 2 input file
# in different configuration
# 20 MB
./Havec.out "input_files/sequential.fa" 32 8 C NP 1048576 20.0
./Havec.out "input_files/sequential.fa" 27 4 C NP 1048576 20.0
./Havec.out "input_files/sequential.fa" 32 8 NC NP 1048576 20.0
./Havec.out "input_files/sequential.fa" 27 4 NC NP 1048576 20.0
echo 'set 1/6 complete'
# 16MB
./Havec.out "input_files/sequential.fa" 32 8 C NP 1048576 16.0
./Havec.out "input_files/sequential.fa" 27 4 C NP 1048576 16.0
./Havec.out "input_files/sequential.fa" 32 8 NC NP 1048576 16.0
./Havec.out "input_files/sequential.fa" 27 4 NC NP 1048576 16.0
echo 'set 2/6 complete'
# 12MB
./Havec.out "input_files/sequential.fa" 32 8 C NP 1048576 12.0
./Havec.out "input_files/sequential.fa" 27 4 C NP 1048576 12.0
./Havec.out "input_files/sequential.fa" 32 8 NC NP 1048576 12.0
./Havec.out "input_files/sequential.fa" 27 4 NC NP 1048576 12.0
echo 'set 3/6 complete'
# 8MB
./Havec.out "input_files/shortfile.fa" 32 8 C NP 1048576 8.0
./Havec.out "input_files/shortfile.fa" 27 4 C NP 1048576 8.0
./Havec.out "input_files/shortfile.fa" 32 8 NC NP 1048576 8.0
./Havec.out "input_files/shortfile.fa" 27 4 NC NP 1048576 8.0
echo 'set 4/6 complete'
# 6MB
./Havec.out "input_files/shortfile.fa" 32 8 C NP 1048576 6
./Havec.out "input_files/shortfile.fa" 27 4 C NP 1048576 6
./Havec.out "input_files/shortfile.fa" 32 8 NC NP 1048576 6
./Havec.out "input_files/shortfile.fa" 27 4 NC NP 1048576 6
echo 'set 5/6 complete'
# 4MB
./Havec.out "input_files/shortfile.fa" 32 8 C NP 1048576 4
./Havec.out "input_files/shortfile.fa" 27 4 C NP 1048576 4
./Havec.out "input_files/shortfile.fa" 32 8 NC NP 1048576 4
./Havec.out "input_files/shortfile.fa" 27 4 NC NP 1048576 4
echo 'set 6/6 complete'
echo 'moving log to parser'
mv output/* result_analyzer/all_results/
# parsing the result
cd result_analyzer
sh parse.sh
mv *.html ../
cd ..
else
echo 'run `make` or `make havec` to build the havec first'
fi