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Calculate average change in pairwise means of GMM components #9

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magsol opened this issue Jul 5, 2018 · 0 comments
Open

Calculate average change in pairwise means of GMM components #9

magsol opened this issue Jul 5, 2018 · 0 comments
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@magsol
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magsol commented Jul 5, 2018

Using the output from #8, calculate an average pairwise component distance for each frame of a video (use the variances in these averages as error bars). This way, for each cell, you should have a 1D time plot: the average pairwise distance (and y-error) at each frame. These could then be plotted together with other cells, particularly to compare control/LLO/mdivi conditions.

For quick pairwise distance comparisons, check out http://scikit-learn.org/stable/modules/generated/sklearn.metrics.pairwise.pairwise_distances.html#sklearn.metrics.pairwise.pairwise_distances with "euclidean" argument.

@magsol magsol added this to the REU Final Week milestone Jul 5, 2018
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