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Using output from #10, perform a PCA to determine components that covary.
The first step is to raster-scan the affinity matrices from "video" format into a 2D matrix, with frames as columns and "affinities" as rows; if you had 100 GMM components and 100 frames over which you evaluated those components, your raster-scanned matrix would be 10,000 x 100.
Perform PCA on this matrix to reduce the time dimension and discover covariances between the components over time. Un-raster-scan the corresponding eigenvectors back into "affinity"-shaped matrices to see where the covariances are positive/negative, and use that implant that information over the original 2D spatial plots of GMM components.
Compare these covariances between conditions (more details TBD).
The text was updated successfully, but these errors were encountered:
Using output from #10, perform a PCA to determine components that covary.
The first step is to raster-scan the affinity matrices from "video" format into a 2D matrix, with frames as columns and "affinities" as rows; if you had 100 GMM components and 100 frames over which you evaluated those components, your raster-scanned matrix would be 10,000 x 100.
Perform PCA on this matrix to reduce the time dimension and discover covariances between the components over time. Un-raster-scan the corresponding eigenvectors back into "affinity"-shaped matrices to see where the covariances are positive/negative, and use that implant that information over the original 2D spatial plots of GMM components.
Compare these covariances between conditions (more details TBD).
The text was updated successfully, but these errors were encountered: