[pre-commit.ci] pre-commit autoupdate (#6)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Tobias Raabe <[email protected]>

Author: pre-commit-ci[bot]

.github/workflows/continuous-integration-workflow.yml

@@ -11,21 +11,22 @@ jobs:
 
   run-tests:
 
-    name: Run tests for ${{ matrix.os }} on ${{ matrix.python-version }}
+    name: Run tests for ${{ matrix.os }} on ${{ matrix.python-version }} and ${{ matrix.r-version }}
     runs-on: ${{ matrix.os }}
 
     strategy:
       fail-fast: false
       matrix:
         os: ['ubuntu-latest', 'macos-latest', 'windows-latest']
         python-version: ['3.6', '3.7', '3.8']
+        r-version: ['3.6.3']
 
     steps:
       - uses: actions/checkout@v2
       - uses: r-lib/actions/setup-r@v1
         with:
-          r-version: '3.6.1' # The R version to download (if necessary) and use.
-      - uses: goanpeca/setup-miniconda@v1
+          r-version: ${{ matrix.r-version }}
+      - uses: conda-incubator/setup-miniconda@v2
         with:
           auto-update-conda: true
           python-version: ${{ matrix.python-version }}
@@ -41,7 +42,7 @@ jobs:
         run: tox -e pytest -- -m "unit or (not integration and not end_to_end)" --cov=./ --cov-report=xml -n auto
 
       - name: Upload coverage report for unit tests and doctests.
-        if: runner.os == 'Linux' && matrix.python-version == '3.8'
+        if: runner.os == 'Linux' && matrix.python-version == '3.8' && matrix.r-version == '3.6.3'
         shell: bash -l {0}
         run: bash <(curl -s https://codecov.io/bash) -F unit -c
 
@@ -50,7 +51,7 @@ jobs:
       #   run: tox -e pytest -- -m integration --cov=./ --cov-report=xml -n auto
 
       # - name: Upload coverage reports of integration tests.
-      #   if: runner.os == 'Linux' && matrix.python-version == '3.8'
+      #   if: runner.os == 'Linux' && matrix.python-version == '3.8' && matrix.r-version == '3.6.3'
       #   shell: bash -l {0}
       #   run: bash <(curl -s https://codecov.io/bash) -F integration -c
 
@@ -59,31 +60,11 @@ jobs:
         run: tox -e pytest -- -m end_to_end --cov=./ --cov-report=xml -n auto
 
       - name: Upload coverage reports of end-to-end tests.
-        if: runner.os == 'Linux' && matrix.python-version == '3.8'
+        if: runner.os == 'Linux' && matrix.python-version == '3.8' && matrix.r-version == '3.6.3'
         shell: bash -l {0}
         run: bash <(curl -s https://codecov.io/bash) -F end_to_end -c
 
       - name: Validate codecov.yml
-        if: runner.os == 'Linux' && matrix.python-version == '3.8'
+        if: runner.os == 'Linux' && matrix.python-version == '3.8' && matrix.r-version == '3.6.3'
         shell: bash -l {0}
         run: cat codecov.yml | curl --data-binary @- https://codecov.io/validate
-
-
-  pre-commit:
-
-    name: Run pre-commit.
-    runs-on: ubuntu-latest
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v1
-        with:
-          python-version: 3.8
-
-      - name: Install dependencies
-        run: pip install tox
-
-      - name: Run pre-commit
-        run: tox -e pre-commit

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v3.2.0
+    rev: v3.4.0
     hooks:
     -   id: check-added-large-files
         args: ['--maxkb=100']
@@ -9,26 +9,38 @@ repos:
         exclude: meta.yaml
     -   id: debug-statements
     -   id: end-of-file-fixer
+-   repo: https://github.com/pre-commit/pygrep-hooks
+    rev: v1.7.0  # Use the ref you want to point at
+    hooks:
+    -   id: python-check-blanket-noqa
+    -   id: python-check-mock-methods
+    -   id: python-no-eval
+    -   id: python-no-log-warn
+    -   id: python-use-type-annotations
+    -   id: rst-backticks
+    -   id: rst-directive-colons
+    -   id: rst-inline-touching-normal
+    -   id: text-unicode-replacement-char
 -   repo: https://github.com/asottile/pyupgrade
-    rev: v2.7.2
+    rev: v2.7.4
     hooks:
     -   id: pyupgrade
         args: [--py36-plus]
 -   repo: https://github.com/asottile/reorder_python_imports
-    rev: v2.3.5
+    rev: v2.3.6
     hooks:
     -   id: reorder-python-imports
 -   repo: https://github.com/psf/black
     rev: 20.8b1
     hooks:
     -   id: black
 -   repo: https://github.com/asottile/blacken-docs
-    rev: v1.8.0
+    rev: v1.9.1
     hooks:
     -   id: blacken-docs
         additional_dependencies: [black]
 -   repo: https://gitlab.com/pycqa/flake8
-    rev: 3.8.3
+    rev: 3.8.4
     hooks:
     -   id: flake8
         types: [python]
@@ -52,12 +64,12 @@ repos:
     hooks:
     -   id: doc8
 -   repo: https://github.com/econchick/interrogate
-    rev: 1.3.1
+    rev: 1.3.2
     hooks:
     -   id: interrogate
         args: [-v, --fail-under=40, src, tests]
 - repo: https://github.com/codespell-project/codespell
-  rev: v1.17.1
+  rev: v2.0.0
   hooks:
     - id: codespell
 -   repo: meta

tests/test_collect.py

@@ -91,11 +91,9 @@ def test_pytask_collect_task_teardown(depends_on, produces, expectation, r_sourc
 
     task = DummyClass()
     task.depends_on = {
-        i: FilePathNode(n.split(".")[0], Path(n)) for i, n in enumerate(depends_on)
-    }
-    task.produces = {
-        i: FilePathNode(n.split(".")[0], Path(n)) for i, n in enumerate(produces)
+        i: FilePathNode.from_path(Path(n)) for i, n in enumerate(depends_on)
     }
+    task.produces = {i: FilePathNode.from_path(Path(n)) for i, n in enumerate(produces)}
     task.markers = [Mark("r", (), {})]
     task.function = task_dummy
     task.function.pytaskmark = task.markers