From 3661a3a9ad4abe9d57eeff9af137f7d05b68e644 Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Sun, 26 May 2024 22:52:57 +0200
Subject: [PATCH 1/4] Improve type checking.

---
 .github/workflows/main.yml | 15 +++++++++++++++
 .pre-commit-config.yaml    | 12 ------------
 CHANGES.md                 |  1 +
 pyproject.toml             |  1 +
 tox.ini                    | 24 ++++++++++--------------
 5 files changed, 27 insertions(+), 26 deletions(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 1080731..1cbb78b 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -15,6 +15,21 @@ on:
 
 jobs:
 
+  run-type-checking:
+
+    name: Run tests for type-checking
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version-file: .python-version
+          allow-prereleases: true
+          cache: pip
+      - run: pip install tox-uv
+      - run: tox -e typing
+
   run-tests:
 
     name: Run tests for ${{ matrix.os }} on ${{ matrix.environment }}
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 93a733b..c895a37 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -42,18 +42,6 @@ repos:
             mdformat-black,
         ]
         args: [--wrap, "88"]
--   repo: https://github.com/pre-commit/mirrors-mypy
-    rev: 'v1.10.0'
-    hooks:
-    -   id: mypy
-        additional_dependencies: [
-            attrs>=21.3.0,
-            click,
-            pytask>=0.4.0,
-            types-PyYAML,
-            types-setuptools
-        ]
-        pass_filenames: false
 - repo: https://github.com/codespell-project/codespell
   rev: v2.2.6
   hooks:
diff --git a/CHANGES.md b/CHANGES.md
index 5b92650..a284ac3 100644
--- a/CHANGES.md
+++ b/CHANGES.md
@@ -11,6 +11,7 @@ releases are available on [PyPI](https://pypi.org/project/pytask-julia) and
 - {pull}`32` uses trusted publishing for PyPI.
 - {pull}`33` uses uuid4 to generate more robust file names for serialized arguments.
 - {pull}`36` updates tests for pytask v0.5.
+- {pull}`37` improves type-checking.
 
 ## 0.4.0 - 2023-10-08
 
diff --git a/pyproject.toml b/pyproject.toml
index 2daf825..102051a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -35,6 +35,7 @@ pytask_julia = "pytask_julia.plugin"
 
 [project.optional-dependencies]
 test = ["pytask-parallel", "pytest", "pytest-cov", "pytest-xdist", "pyyaml"]
+typing = ["mypy", "pyyaml", "types-PyYAML"]
 
 [tool.rye]
 managed = true
diff --git a/tox.ini b/tox.ini
index 1957b61..9672453 100644
--- a/tox.ini
+++ b/tox.ini
@@ -1,23 +1,19 @@
 [tox]
-envlist = pytest
+requires = tox>=4
+envlist = test, typing
 
 [testenv]
 allowlist_externals = julia
 passenv = CI
-usedevelop = true
+package = editable
 
-[testenv:pytest]
-deps =
-    # Package dependencies
-    pytask >=0.4.0
-    pytask-parallel >=0.4.0
-
-    # Optional package dependencies
-    pyyaml
-
-    pytest
-    pytest-cov
-    pytest-xdist
+[testenv:test]
+extras = test
 commands =
     julia --project=. --eval "import Pkg; Pkg.instantiate()"
     pytest {posargs}
+
+
+[testenv:typing]
+extras = typing
+commands = mypy

From 6d5e889fb6ea6bd3d79df88266c715e06de07140 Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Sun, 26 May 2024 22:54:33 +0200
Subject: [PATCH 2/4] add.,

---
 .python-version | 1 +
 1 file changed, 1 insertion(+)
 create mode 100644 .python-version

diff --git a/.python-version b/.python-version
new file mode 100644
index 0000000..8531a3b
--- /dev/null
+++ b/.python-version
@@ -0,0 +1 @@
+3.12.2

From 4255bc6ae4cdd4213efff675f9be021b29f839b9 Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Sun, 26 May 2024 22:56:40 +0200
Subject: [PATCH 3/4] FIx.

---
 pixi.lock      | 504 +++++++++++++++++++++++++++++++++++--------------
 pyproject.toml |   2 +-
 2 files changed, 362 insertions(+), 144 deletions(-)

diff --git a/pixi.lock b/pixi.lock
index 076eed4..cf1bd88 100644
--- a/pixi.lock
+++ b/pixi.lock
@@ -1,75 +1,184 @@
-version: 4
+version: 5
 environments:
   default:
     channels:
     - url: https://conda.anaconda.org/conda-forge/
+    indexes:
+    - https://pypi.org/simple
     packages:
       linux-64:
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/arpack-3.8.0-nompi_h0baa96a_101.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.28.1-hd590300_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.2.2-hbcca054_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/curl-8.7.1-hca28451_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/git-2.45.0-pl5321hef9f9f3_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/gmp-6.3.0-h59595ed_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/icu-73.2-h59595ed_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/julia-1.10.2-hf9b02c4_1.conda
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@@ -6120,8 +6332,8 @@ packages:
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-  url: https://files.pythonhosted.org/packages/11/0f/26e925e3349e484b3545377b79a5625a42f843cd6d5d1ac8a9a2f7512a7a/SQLAlchemy-2.0.29-cp39-cp39-macosx_11_0_arm64.whl
-  sha256: dba622396a3170974f81bad49aacebd243455ec3cc70615aeaef9e9613b5bca5
+  url: https://files.pythonhosted.org/packages/69/da/af5a4c23729473bec1139822aabc36e2888e78bdf805de257ee0cfcf361f/SQLAlchemy-2.0.29-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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-  url: https://files.pythonhosted.org/packages/aa/f9/e9dd9baa7f569d5c0acc123dcb98286f6a219dca6970a00c83d996aed5c1/SQLAlchemy-2.0.29-cp39-cp39-win_amd64.whl
-  sha256: 04c487305ab035a9548f573763915189fc0fe0824d9ba28433196f8436f1449c
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-  url: https://files.pythonhosted.org/packages/20/5a/cc15fc867f5b490e63e5f4d3c4c283eaf60cada1e01153818ce21690ce5c/SQLAlchemy-2.0.29-cp39-cp39-macosx_10_9_x86_64.whl
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@@ -6354,8 +6566,8 @@ packages:
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@@ -6393,8 +6605,8 @@ packages:
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@@ -6432,8 +6644,8 @@ packages:
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@@ -6687,6 +6899,12 @@ packages:
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   sha256: 939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc
   requires_python: '>=3.7'
+- kind: pypi
+  name: types-pyyaml
+  version: 6.0.12.20240311
+  url: https://files.pythonhosted.org/packages/b3/9a/2b75087549910ebd2be9894bfd89450668b2455094a8f2ba2b67072f15a5/types_PyYAML-6.0.12.20240311-py3-none-any.whl
+  sha256: b845b06a1c7e54b8e5b4c683043de0d9caf205e7434b3edc678ff2411979b8f6
+  requires_python: '>=3.8'
 - kind: pypi
   name: typing-extensions
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diff --git a/pyproject.toml b/pyproject.toml
index 102051a..9fc0715 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -116,7 +116,7 @@ platforms = ["win-64", "linux-64", "osx-64", "osx-arm64"]
 pytask_julia = { path = ".", editable = true }
 
 [tool.pixi.environments]
-default = { solve-group = "default" }
+default = { solve-group = "default", features = ["test", "typing"]}
 test = { features = ["test"], solve-group = "default" }
 py38 = { features = ["py38", "test"]}
 py39 = { features = ["py39", "test"]}

From 76154b993d3567b24fb27c52b4b41d969e2e177c Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Sun, 26 May 2024 22:59:09 +0200
Subject: [PATCH 4/4] fix.

---
 .github/workflows/main.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 1cbb78b..93699fa 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -47,7 +47,7 @@ jobs:
         uses: julia-actions/setup-julia@v2
       - uses: prefix-dev/setup-pixi@v0.7.0
         with:
-          pixi-version: v0.20.1
+          pixi-version: v0.22.0
           # cache: true
           environments: ${{ matrix.environment }}