diff --git a/scripts/copy_cram_for_str.sh b/scripts/copy_cram_for_str.sh new file mode 100644 index 00000000..c668fa88 --- /dev/null +++ b/scripts/copy_cram_for_str.sh @@ -0,0 +1,10 @@ +#!/usr/bin/env bash + +#check if segDup causing extremely high coverage +gsutil cp "gs://cpg-tob-wgs-main/cram/nagim/CPG3772.cram" "gs://cpg-tob-wgs-test/cram/nagim/CPG3772.cram" +gsutil cp "gs://cpg-tob-wgs-main/cram/nagim/CPG3772.cram.crai" "gs://cpg-tob-wgs-test/cram/nagim/CPG3772.cram.crai" + +# check optical duplicate issue +gsutil cp "gs://cpg-tob-wgs-main/cram/nagim/CPG67314.cram" "gs://cpg-tob-wgs-test/cram/nagim/CPG67314.cram" +gsutil cp "gs://cpg-tob-wgs-main/cram/nagim/CPG67314.cram.crai" "gs://cpg-tob-wgs-test/cram/nagim/CPG67314.cram.crai" +