Create master_zip_bioheart.sh

Author: htanudisastro

master_zip_bioheart.sh

@@ -0,0 +1,22 @@
+#!/bin/bash
+set -euo pipefail
+
+BASE_PREFIX="gs://cpg-tenk10k-test-analysis/str/associatr/final_freeze/bioheart_n975/trs/zips"
+OUTPUT_GCS="gs://cpg-tenk10k-test-analysis/str/associatr/final_freeze/bioheart_n975/trs/master_zip/bioheart.zip"
+
+# Work in a temp dir
+TMPDIR=$(mktemp -d)
+cd "$TMPDIR"
+
+echo "Copying all cell-type zips from $BASE_PREFIX ..."
+gsutil -m cp "${BASE_PREFIX}/*.zip" .
+
+echo "Creating bioheart.zip from:"
+ls *.zip
+
+zip -r bioheart.zip *.zip
+
+echo "Uploading bioheart.zip to $OUTPUT_GCS ..."
+gsutil cp bioheart.zip "$OUTPUT_GCS"
+
+echo "Done."