Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ds004443-mriqc: "Exception raised while executing Node non_steady_state_detector." #87

Open
jbwexler opened this issue Aug 27, 2024 · 0 comments
Labels
mriqc Affects MRIQC

Comments

@jbwexler
Copy link
Collaborator

Similar errors occurred for most subjects:


Traceback (most recent call last):
  File "/opt/conda/lib/python3.11/site-packages/mriqc/engine/plugin.py", line 64, in run_node
    result['result'] = node.run(updatehash=updatehash)
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run
    result = self._run_interface(execute=True)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface
    return self._run_command(execute)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command
    raise NodeExecutionError(msg)
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node non_steady_state_detector.

Traceback:
        Traceback (most recent call last):
          File "/opt/conda/lib/python3.11/site-packages/nipype/interfaces/base/core.py", line 397, in run
            runtime = self._run_interface(runtime)
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/nipype/algorithms/confounds.py", line 992, in _run_interface
            in_nii.dataobj[:, :, :, :50].mean(axis=0).mean(axis=0).mean(axis=0)
            ~~~~~~~~~~~~~~^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/nibabel/arrayproxy.py", line 463, in __getitem__
            return self._get_scaled(dtype=None, slicer=slicer)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/nibabel/arrayproxy.py", line 424, in _get_scaled
            scaled = apply_read_scaling(self._get_unscaled(slicer=slicer), scl_slope, scl_inter)
                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/nibabel/arrayproxy.py", line 403, in _get_unscaled
            return fileslice(
                   ^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/nibabel/fileslice.py", line 779, in fileslice
            arr_data = read_segments(fileobj, segments, n_bytes, lock)
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/nibabel/fileslice.py", line 671, in read_segmen
ts
            raise ValueError('Whoops, not enough data in file')
        ValueError: Whoops, not enough data in file```
@jbwexler jbwexler added the mriqc Affects MRIQC label Aug 27, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
mriqc Affects MRIQC
Projects
None yet
Development

No branches or pull requests

1 participant