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Nevermind, I figured it out.

The new environment: CLICKHOUSE_SKIP_USER_SETUP=1 has to go under the plausible_events_db entry in the docker-compose.yml file:

  plausible_events_db:
...
    environment:
      - CLICKHOUSE_SKIP_USER_SETUP=1

I guess that's what I get for applying patches by hand :)

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Answer selected by timbowhite
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