fix(snic): normalize canvas_size to c(width, height) convention #244
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| name: Deploy Shiny App to shinyapps.io | |
| on: | |
| push: | |
| branches: | |
| - main | |
| workflow_dispatch: # Allow manual triggering | |
| permissions: | |
| contents: read | |
| # CRITICAL: Prevent concurrent deployments to shinyapps.io | |
| # Without this, rapid commits cause HTTP 409 errors ("tasks already in progress") | |
| concurrency: | |
| group: shinyapps-deployment | |
| cancel-in-progress: false # Queue deployments instead of canceling | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: 'release' | |
| use-public-rspm: false # Disable RSPM to use standard CRAN | |
| - name: Set up Pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev | |
| - name: Install R dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| any::rsconnect | |
| # Deploy with automatic retry for transient errors (HTTP 409, timeouts) | |
| - name: Deploy to shinyapps.io | |
| uses: nick-fields/retry@v3 | |
| with: | |
| timeout_minutes: 90 | |
| max_attempts: 3 | |
| retry_wait_seconds: 300 # 5 min wait between retries | |
| warning_on_retry: true | |
| command: Rscript inst/shiny-app/deploy.R | |
| env: | |
| SHINYAPPS_ACCOUNT: ${{ secrets.SHINYAPPS_ACCOUNT }} | |
| SHINYAPPS_TOKEN: ${{ secrets.SHINYAPPS_TOKEN }} | |
| SHINYAPPS_SECRET: ${{ secrets.SHINYAPPS_SECRET }} | |
| # Wait for shinyapps.io to finalize deployment before allowing next run | |
| - name: Post-deployment stabilization | |
| if: success() | |
| run: | | |
| echo "Waiting for shinyapps.io to finalize deployment..." | |
| sleep 30 |