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looper: error: unrecognized arguments: --looper-config #545

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binbinZhao2017 opened this issue Mar 19, 2025 · 0 comments
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looper: error: unrecognized arguments: --looper-config #545

binbinZhao2017 opened this issue Mar 19, 2025 · 0 comments

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@binbinZhao2017
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Hi, I am trying to run the Extended tutorial. After following all the steps, I used looper to run a project-level analysis with the given command. However, I noticed that in the tutorial, looper runp is sometimes followed by the --looper-config parameter (which doesn’t seem to exist in my case—my looper version is 2.0.1), sometimes by the -c parameter (which gives the error looper.exceptions.MisconfigurationException: Looper dotfile (examples/test_project/tutorial_refgenie.yaml) is missing 'pep_config' key), and other times directly followed by the configuration file without any parameter (resulting in looper: error: unrecognized arguments: examples/test_project/tutorial_refgenie.yaml).

It seems that none of these approaches work in my case. Could you clarify the correct way to run the command? Thanks!

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