diff --git a/.github/build_deploy.yml b/.github/build_deploy.yml new file mode 100644 index 0000000..5986dc5 --- /dev/null +++ b/.github/build_deploy.yml @@ -0,0 +1,41 @@ +name: Build and Release + +on: + push: + tags: + - "v*" + + +# Builds on tag +jobs: + build-and-upload: + # https://docs.pypi.org/trusted-publishers/using-a-publisher/ + name: Build-Test-Release on Tag + runs-on: ubuntu-latest + environment: release + permissions: + id-token: write + contents: read + steps: + - name: Check out code + uses: actions/checkout@v4 + with: + fetch-depth: 0 # needed for tags for dunamai + - name: Install uv + uses: astral-sh/setup-uv@v6 + with: + enable-cache: true + - uses: actions/setup-python@v5 + with: + python-version: "3.10" + - name: Install dependencies + run: uv sync + - name: Build package + run: | + uv build + - name: Run tests + run: | + uv run pytest --ignore=tests/extras + - name: Upload package to PyPI + if: startsWith(github.ref, 'refs/tags/v') + uses: pypa/gh-action-pypi-publish@release/v1 \ No newline at end of file diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 91abb11..2ae31f9 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -5,7 +5,7 @@ version: 2 updates: - - package-ecosystem: "pip" # See documentation for possible values + - package-ecosystem: "uv" # See documentation for possible values directory: "/" # Location of package manifests schedule: interval: "weekly" diff --git a/.github/test.yml b/.github/test.yml new file mode 100644 index 0000000..a4caba8 --- /dev/null +++ b/.github/test.yml @@ -0,0 +1,64 @@ +name: Test and Coverage + +on: + workflow_dispatch: + push: + branches: + - main + pull_request: + branches: + - main + +concurrency: + # cancels superceded runs + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + +env: + LATEST_PY_VERSION: &latest '3.13' + +jobs: + test: + runs-on: ${{ matrix.os }} + strategy: + fail-fast: true + matrix: + include: + # test oldest & latest versions against ubuntu + # and one version against windows and macos + - { os: ubuntu-latest, python-version: "3.10" } + - { os: ubuntu-latest, python-version: *latest } + #- { os: ubuntu-latest, python-version: "3.14t" } + #- { os: ubuntu-latest, python-version: "pypy3.11" } + - { os: windows-latest, python-version: *latest } + - { os: macos-latest, python-version: *latest } + environment: test + permissions: + contents: write + steps: + - name: Check out code + uses: actions/checkout@v4 + with: + fetch-depth: 0 + - uses: actions/setup-python@v5 + with: + python-version: ${{ matrix.python-version }} + allow-prereleases: true + - name: Install uv + uses: astral-sh/setup-uv@v6 + with: + enable-cache: true + python-version: ${{ matrix.python-version }} + - name: Install dependencies + run: uv sync + - name: Run tests with coverage and Build + env: + COVERAGE_PROCESS_START: ${{ github.workspace }}/.coveragerc + run: | + uv run pytest --verbose --cov --cov-report=term-missing --ignore=tests/extras + uv build + - name: Python Coverage Comment if main + if: ${{ github.ref == 'refs/heads/main' && matrix.python-version == env.LATEST_PY_VERSION && matrix.os == 'ubuntu-latest' }} + uses: py-cov-action/python-coverage-comment-action@v3.23 + with: + GITHUB_TOKEN: ${{ github.token }} \ No newline at end of file diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 9de6d1c..4006303 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,37 +1,27 @@ default_language_version: python: python3 +exclude: "^$" + repos: - - repo: https://github.com/ambv/black - rev: 23.3.0 - hooks: - - id: black - repo: https://github.com/kynan/nbstripout - rev: 0.6.1 + rev: 0.8.1 hooks: - id: nbstripout - - repo: https://github.com/pre-commit/mirrors-prettier - rev: v3.0.0-alpha.6 - hooks: - - id: prettier - exclude: "packages/app/public/.*|packages/jupyter_app_base/dist/.*|packages/app/build/.*|pyrightconfig.json" - pass_filenames: true - - repo: https://github.com/charliermarsh/ruff-pre-commit - rev: v0.0.261 + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v6.0.0 hooks: - - id: ruff - - repo: "local" + - id: check-added-large-files + - repo: https://github.com/astral-sh/ruff-pre-commit + # Ruff version. + rev: v0.12.11 hooks: - - entry: tsc --noEmit - id: "tsc" - name: "tsc" - language: node - pass_filenames: false - types_or: [ts, tsx] - args: [] - require_serial: false - additional_dependencies: ["typescript@~4.1.3"] - minimum_pre_commit_version: "0" - exclude: "packages/app/public/.*|packages/app/build/.*" + # Run the linter. + - id: ruff-check + types_or: [ python, pyi, jupyter ] + args: [ --fix ] + # Run the formatter. + - id: ruff-format + types_or: [ python, pyi, jupyter ] - repo: local hooks: - entry: pyright @@ -41,3 +31,32 @@ repos: language: node pass_filenames: true additional_dependencies: ["pyright"] + # - repo: https://github.com/cidrblock/pylint-ruff-sync + # rev: v25.07.18.000003 + # hooks: + # - id: pylint-ruff-sync + - repo: local + hooks: + - id: pylint + name: pylint + entry: pylint + language: system + types: [python] + require_serial: true + always_run: false + pass_filenames: true + args: + [ + "-rn", + "-sn", + ] + - repo: local + hooks: + - id: pytest + name: pytest + entry: pytest --cov -n 6 --cov-report=term-missing + language: system + types: [python] + pass_filenames: false + always_run: false + files: '.*\.(py|ipynb)$' \ No newline at end of file diff --git a/.python-version b/.python-version new file mode 100644 index 0000000..7c7a975 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.10 \ No newline at end of file diff --git a/fabduckdb/__init__.py b/fabduckdb/__init__.py index 9aef8c3..ea87f5d 100644 --- a/fabduckdb/__init__.py +++ b/fabduckdb/__init__.py @@ -1,5 +1,8 @@ -from fabduckdb.fab_execute import registerfab -from fabduckdb.decorator import wrap_execute -from fabduckdb.fab_functions import register_function +# from fabduckdb.fab_execute import registerfab +# from fabduckdb.decorator import wrap_execute +# from .fab_functions import register_function + +from .fab_execute import registerfab +from .table_functions.fab_functions import register_function registerfab() diff --git a/fabduckdb/_version.py b/fabduckdb/_version.py index e0032b9..cbcf162 100644 --- a/fabduckdb/_version.py +++ b/fabduckdb/_version.py @@ -1,8 +1,6 @@ -# This file is entirely overwritten at build time -# Module dunamai is used to create the dev and release __version__'s -# from the most recent git tag -# See git action yaml for details +import importlib.metadata -__version__ = "0.0.0" -__commit__ = "1234567890" -__commit_short__ = "1234" +try: + __version__ = importlib.metadata.version(__package__ or __name__) +except importlib.metadata.PackageNotFoundError: # pragma: no cover + __version__ = "0.0.0" diff --git a/fabduckdb/decorator.py b/fabduckdb/decorator.py index 54cc68b..cb98818 100644 --- a/fabduckdb/decorator.py +++ b/fabduckdb/decorator.py @@ -29,5 +29,5 @@ def _wrap(funcname, newfunc, append: bool = False): setattr(DuckDBPyConnection, funcname, replacement_func) -def wrap_execute(func, append: bool = False): +def wrap_execute(func: callable, append: bool = False): _wrap(funcname="execute", newfunc=func, append=append) diff --git a/fabduckdb/fab_execute.py b/fabduckdb/fab_execute.py index bed8250..d6f70c0 100644 --- a/fabduckdb/fab_execute.py +++ b/fabduckdb/fab_execute.py @@ -4,9 +4,10 @@ from duckdb import DuckDBPyConnection import duckdb -from fabduckdb.fab_functions import ContextObject, _consume_functions -from fabduckdb.fab_statements import _consume_statements -from fabduckdb.splitter import split_into_statements +from .table_functions.fab_functions import ContextObject, _consume_functions + +# from fabduckdb.fab_statements import _consume_statements +from .splitter import split_into_statements PATCHED = False DONTPATCH = False @@ -24,7 +25,7 @@ def registerfab(): return else: if not hasattr(DuckDBPyConnection, "execute_decorated"): - logger.info("Patching") + logger.debug("Patching") DuckDBPyConnection._execute_orig_ = DuckDBPyConnection.execute # type: ignore DuckDBPyConnection.execute_decorated = DuckDBPyConnection.execute # type: ignore @@ -44,15 +45,9 @@ def registerfab(): def _consume( query: str, con, params ) -> Tuple[Optional[List[str]], Dict[str, ContextObject]]: - statements, context = _consume_statements(query, con, params) - - if statements is not None: - return statements, context - else: - # After doing any statement rewriting, see if there's any functions to replace - statements, context = _consume_functions(query, con, params) + statements, context = _consume_functions(query, con, params) - return statements, context + return statements, context def process_top_level_statement(con, statement: str, params: object) -> object: @@ -64,7 +59,7 @@ def process_top_level_statement(con, statement: str, params: object) -> object: while statementQueue: statement = statementQueue.popleft() - logger.info(f"Processing: {statement}") + logger.debug(f"Processing: {statement}") (new_statements, new_context) = _consume(statement, con=con, params=params) @@ -74,7 +69,7 @@ def process_top_level_statement(con, statement: str, params: object) -> object: if not v.is_file: if v.data is None: raise ValueError(f"{k} is None, cannot process") - logger.info(f"Registering {k}") + logger.debug(f"Registering {k}") con.register(k, v.data) DuckDBPyConnection._fabitems_to_unregister[con].append(k) # type: ignore # TODO: Delete any files @@ -85,11 +80,11 @@ def process_top_level_statement(con, statement: str, params: object) -> object: params = {k: v for k, v in params.items() if str(k) in statement} if len(params) == 0: params = None - res = con.execute_decorated(query=statement, parameters=params, multiple_parameter_sets=False) # type: ignore + res = con.execute_decorated(query=statement, parameters=params) # type: ignore # can't unregister them until the next statement: the data must be consumed first else: - logger.info(f"Rewrote: {statement} => {new_statements}") + logger.debug(f"Rewrote: {statement} => {new_statements}") list(map(statementQueue.appendleft, new_statements)) @@ -103,7 +98,9 @@ def convert_questionmark_parameters(statement): return statement -def fab_execute(self, query: str, parameters: object = None, multiple_parameter_sets: bool = False) -> DuckDBPyConnection: # type: ignore +def fab_execute( + self, query: str, parameters: object = None, multiple_parameter_sets: bool = False +) -> DuckDBPyConnection: # type: ignore """I am your captain now.""" registerfab() @@ -111,7 +108,7 @@ def fab_execute(self, query: str, parameters: object = None, multiple_parameter_ # TODO: Don't split on semicolon statements = split_into_statements(query) - logger.info(f"# Statements: {len(statements)}, {statements}") + logger.debug(f"# Statements: {len(statements)}, {statements}") res = self if self not in DuckDBPyConnection._fabitems_to_unregister: # type: ignore @@ -122,7 +119,7 @@ def fab_execute(self, query: str, parameters: object = None, multiple_parameter_ if len(DuckDBPyConnection._fabitems_to_unregister[self]) > 0: # type: ignore for i in DuckDBPyConnection._fabitems_to_unregister[self]: # type: ignore - logger.info(f"Unregistering {i}") + logger.debug(f"Unregistering {i}") self.unregister(i) DuckDBPyConnection._fabitems_to_unregister[self] = [] # type: ignore diff --git a/fabduckdb/fab_statements.py b/fabduckdb/fab_statements.py deleted file mode 100644 index 1b56593..0000000 --- a/fabduckdb/fab_statements.py +++ /dev/null @@ -1,155 +0,0 @@ -import logging -from typing import Dict, List, Optional, Tuple - -import sqlparse -from jinja2 import Template -from sqlparse.tokens import Whitespace - -from fabduckdb.fab_functions import ContextObject - -logger = logging.getLogger(__name__) -DEFAULT_HOW = "UNION ALL" - - -def threaded_statement(query: str): - return None - - -def execute_statement(query: str, tokens: list[sqlparse.tokens.Token], con) -> Tuple[Optional[List[str]], Dict[str, ContextObject]]: # type: ignore - # firsttoken=tokens[0].value.upper() - - if len(tokens) != 2 and len(tokens) != 4: - raise ValueError( - f"Unexpected Syntax: Expected two or four tokens: execute (statement) [USING 'method']. {len(tokens)} {[t.value for t in tokens]}" - ) - - arguments = {} - for i in range(0, len(tokens) - 1, 2): - arguments[tokens[i].value.upper()] = tokens[i + 1].value - - execute_statement = arguments["EXECUTE"] - how = arguments.get("USING", DEFAULT_HOW).strip("()'\"") - execute_results = con._execute_orig_(execute_statement).arrow() - - queries = execute_results.column(0).to_pylist() - - if how == "None": - return (queries, {}) - else: - return ([f" {how} ".join(queries)], {}) - - -def find_loop_statements(parsedquery): - s1 = parsedquery[0] - loops = [] - - def process_paren(token): - # print(f"Processing paren {token.value}") - inner_tokens = token.tokens - - inner_tokens = inner_tokens[1:-1] - # print(inner_tokens) - # If the first token is 'loop' - if inner_tokens[0].value.upper() == "LOOP": - loops.append( - token.value[1:-1].strip() - ) # return the string, but strip off the enclosing parens - return - - # Traverse through the parsed tokens - for token in s1.tokens: - # print(token.value, token.ttype) - # If the token is a Parenthesis - - if isinstance(token, sqlparse.sql.Parenthesis): - process_paren(token) - - if hasattr(token, "get_sublists"): - for sl in token.get_sublists(): - if isinstance(sl, sqlparse.sql.Parenthesis): - process_paren(sl) - - if len(loops) > 0: - logger.info(f"Found loops: {loops}") - return loops - else: - return None - - -def loop_statement(query: str, tokens: list[sqlparse.tokens.Token], con) -> Tuple[Optional[List[str]], Dict[str, ContextObject]]: # type: ignore - """Uses the OVER statement as parameters to the Jinja2 templatized statement""" - - firsttoken = tokens[0].value.upper() - - if firsttoken != "LOOP": - raise ValueError(f"Unexpected, must be a LOOP statement: {firsttoken}") - else: - if len(tokens) % 2 != 0: - raise ValueError( - f"Unexpected Syntax: there should be an even number of tokens, but got {len(tokens)}: LOOP (statement) OVER (statement) [USING 'method']. Got {[t.value for t in tokens]}" - ) - else: - logger.info(f"Let's loopify {query}, with tokens {tokens}, {len(tokens)}") - - arguments = {} - for i in range(0, len(tokens) - 1, 2): - arguments[tokens[i].value.upper()] = tokens[i + 1].value - - # validate input - if "LOOP" not in arguments or "OVER" not in arguments: - raise ValueError("Loop statement must have an ON and OVER clause") - - loop = arguments["LOOP"] - over = arguments["OVER"] - how = arguments.get("USING", DEFAULT_HOW).strip("()'\"") - - # Execute the "over" clause - over_results = con._execute_orig_(over).arrow() - - queries = [Template(loop).render(row) for row in over_results.to_pylist()] - - if how == "None": - return (queries, {}) - else: - return ([f" {how} ".join(queries)], {}) - - -STATEMENT_MAP = { - "LOOP": loop_statement, - "EXECUTE": execute_statement, - "THREADED": threaded_statement, -} - - -def get_tokenlist(parsedquery): - tokens = [ - t - for t in parsedquery[0].tokens - if t.ttype != Whitespace and not t.is_whitespace - ] - return tokens - - -def _consume_statements( - query: str, con, params -) -> Tuple[Optional[List[str]], Dict[str, ContextObject]]: - firstword = query.split(maxsplit=1)[0].upper() - parsedquery = sqlparse.parse(query) - - loops = find_loop_statements(parsedquery) - if loops is not None: - for loop in loops: - replacement = STATEMENT_MAP["LOOP"]( - loop, get_tokenlist(sqlparse.parse(loop)), con - ) - query = query.replace(loop, replacement[0][0]) - return ([query], {}) - - if firstword in STATEMENT_MAP: - global lasttokens - tokens = get_tokenlist(parsedquery) - lasttokens = tokens - - return STATEMENT_MAP[firstword](query, tokens, con) - else: - return (None, {}) diff --git a/fabduckdb/splitter.py b/fabduckdb/splitter.py index b09e228..d2e7b64 100644 --- a/fabduckdb/splitter.py +++ b/fabduckdb/splitter.py @@ -3,4 +3,4 @@ def split_into_statements(query: str) -> List[str]: - return [statement for statement in sqlparse.split(query)] # type: ignore + return [statement for statement in sqlparse.split(query)] diff --git a/fabduckdb/fab_functions.py b/fabduckdb/table_functions/fab_functions.py similarity index 94% rename from fabduckdb/fab_functions.py rename to fabduckdb/table_functions/fab_functions.py index 4ed332a..5e7b433 100644 --- a/fabduckdb/fab_functions.py +++ b/fabduckdb/table_functions/fab_functions.py @@ -122,7 +122,7 @@ def extract_and_replace_functions(query) -> Tuple[str, Dict[str, ContextObject]] for co in _extract_subquery_strings(query): i += 1 name = f"{_DFPREFIX}_{i}" - # logger.info(keyword) + # logger.debug(keyword) co.name = name @@ -141,14 +141,14 @@ def extract_and_replace_functions(query) -> Tuple[str, Dict[str, ContextObject]] co.params += f"filename='{name}'" for old, new in replacements.items(): - logger.info(f"Replacing {old} with {new}") + logger.debug(f"Replacing {old} with {new}") query = query.replace(old, new) # type: ignore # if only one function without a beginning subquery if len(replacements) > 0: values = [value for value in replacements.values() if value is not None] if re.match(rf"(?s)\s*({'|'.join(values)}).*", query) is not None: - logger.info(f"Starts with replacement {values}") + logger.debug(f"Starts with replacement {values}") query = f"select * from {query}" return query, subqueries @@ -157,7 +157,7 @@ def extract_and_replace_functions(query) -> Tuple[str, Dict[str, ContextObject]] def execute_allowlisted_function( functionname: str, params: str, con: object, statement_params ) -> object: - logger.info(f"Running {functionname} against {params}") + logger.debug(f"Running {functionname} against {params}") reg_function = registered_functions[functionname] function = reg_function.func # Define the parameter string @@ -169,7 +169,7 @@ def execute_allowlisted_function( subbed_param_string = subbed_param_string.replace(f"${k}", str(v)) # Replace statement params with any parameters - logger.info(f"Params: {param_string} {subbed_param_string}") + logger.debug(f"Params: {param_string} {subbed_param_string}") param_string = subbed_param_string # Parse the parameter string into an AST @@ -213,10 +213,10 @@ def _consume_functions( if subqueries is None or len(subqueries) == 0: return (None, None) # type: ignore - logger.info(f"{query} rewritten to {newquery}, {subqueries}") + logger.debug(f"{query} rewritten to {newquery}, {subqueries}") for k, co in subqueries.items(): - logger.info(f"Executing subquery {co.functioncall}") + logger.debug(f"Executing subquery {co.functioncall}") result = execute_allowlisted_function( co.functionname, co.params, con=con, statement_params=params ) diff --git a/main.py b/main.py new file mode 100644 index 0000000..a29c407 --- /dev/null +++ b/main.py @@ -0,0 +1,6 @@ +def main(): + print("Hello from fabduckdb!") + + +if __name__ == "__main__": + main() diff --git a/notebooks/decorator_example.ipynb b/notebooks/decorator_example.ipynb index 5d82201..366a14b 100644 --- a/notebooks/decorator_example.ipynb +++ b/notebooks/decorator_example.ipynb @@ -10,14 +10,15 @@ "%autoreload 2\n", "\n", "import time\n", - "import duckdb \n", + "import duckdb\n", "import fabduckdb\n", "import logging\n", "\n", "logging.basicConfig(\n", - " format='%(asctime)s %(name)s %(levelname)-8s %(message)s',\n", + " format=\"%(asctime)s %(name)s %(levelname)-8s %(message)s\",\n", " level=logging.DEBUG,\n", - " datefmt='%Y-%m-%d %H:%M:%S')\n", + " datefmt=\"%Y-%m-%d %H:%M:%S\",\n", + ")\n", "\n", "\n", "logger = logging.getLogger()" @@ -30,24 +31,28 @@ "outputs": [], "source": [ "# Logging decorator\n", - "def execute_decorator_log(func, prefix = \"\"):\n", + "def execute_decorator_log(func, prefix=\"\"):\n", " def wrapper(*args, **kwargs):\n", " start = time.time()\n", " result = func(*args, **kwargs)\n", " end = time.time()\n", - " logger.info(f\"{prefix}Query duration: {round(end-start, 3)}s, {args} {kwargs}\")\n", + " logger.info(\n", + " f\"{prefix}Query duration: {round(end - start, 3)}s, {args} {kwargs}\"\n", + " )\n", " return result\n", + "\n", " return wrapper\n", "\n", + "\n", "fabduckdb.wrap_execute(execute_decorator_log, append=False)\n", "\n", - "duckdb.default_connection.execute(\"pragma version\").df()" + "duckdb.default_connection().execute(\"pragma version\").df()" ] } ], "metadata": { "kernelspec": { - "display_name": "fabduck1", + "display_name": "fabduckdb", "language": "python", "name": "python3" }, @@ -61,7 +66,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.3" + "version": "3.10.18" } }, "nbformat": 4, diff --git a/notebooks/dynamic_examples.ipynb b/notebooks/dynamic_examples.ipynb index 74a5c2a..bf358bd 100644 --- a/notebooks/dynamic_examples.ipynb +++ b/notebooks/dynamic_examples.ipynb @@ -13,13 +13,13 @@ "\n", "\n", "logging.basicConfig(\n", - " format='%(asctime)s %(name)s %(levelname)-8s %(message)s',\n", + " format=\"%(asctime)s %(name)s %(levelname)-8s %(message)s\",\n", " level=logging.DEBUG,\n", - " datefmt='%Y-%m-%d %H:%M:%S')\n", + " datefmt=\"%Y-%m-%d %H:%M:%S\",\n", + ")\n", "\n", "logger = logging.getLogger(\"fab_duckdb\")\n", - "logger.setLevel(logging.DEBUG)\n", - "\n" + "logger.setLevel(logging.DEBUG)" ] }, { @@ -28,8 +28,7 @@ "metadata": {}, "outputs": [], "source": [ - "import duckdb \n", - "import fabduckdb" + "import duckdb" ] }, { @@ -38,7 +37,7 @@ "metadata": {}, "outputs": [], "source": [ - "query = \"select 'select * from range(' || x::varchar || ')' from range(3) t(x)\" \n", + "query = \"select 'select * from range(' || x::varchar || ')' from range(3) t(x)\"\n", "\n", "duckdb.execute(query).df()" ] @@ -49,7 +48,9 @@ "metadata": {}, "outputs": [], "source": [ - "query = \"execute (select 'select * from range(' || x::varchar || ')' from range(3) t(x))\" \n", + "query = (\n", + " \"execute (select 'select * from range(' || x::varchar || ')' from range(3) t(x))\"\n", + ")\n", "\n", "duckdb.default_connection.execute(query).df()" ] @@ -64,7 +65,6 @@ "\n", "import duckdb\n", "\n", - "import fabduckdb\n", "\n", "statement = \"execute (select 'select ' || i || ' as r, x from range(' || i || ') t(x)' from range(4) t(i)) using ('union all by name')\"\n", "\n", diff --git a/notebooks/function_examples.ipynb b/notebooks/function_examples.ipynb index 9e426b4..7121c49 100644 --- a/notebooks/function_examples.ipynb +++ b/notebooks/function_examples.ipynb @@ -10,16 +10,21 @@ "%autoreload 2\n", "\n", "import logging\n", - "\n", + "from fabduckdb import register_function\n", + "from fabduckdb.table_functions import fab_functions\n", + "import duckdb\n", + "import pandas as pd\n", + "import numpy as np\n", + "from datetime import datetime\n", "\n", "logging.basicConfig(\n", - " format='%(asctime)s %(name)s %(levelname)-8s %(message)s',\n", + " format=\"%(asctime)s %(name)s %(levelname)-8s %(message)s\",\n", " level=logging.DEBUG,\n", - " datefmt='%Y-%m-%d %H:%M:%S')\n", + " datefmt=\"%Y-%m-%d %H:%M:%S\",\n", + ")\n", "\n", "logger = logging.getLogger(\"fab_duckdb\")\n", - "logger.setLevel(logging.DEBUG)\n", - "\n" + "logger.setLevel(logging.DEBUG)" ] }, { @@ -28,9 +33,6 @@ "metadata": {}, "outputs": [], "source": [ - "import pandas as pd\n", - "import numpy as np\n", - "from datetime import datetime\n", "def df_creator(x: int) -> pd.DataFrame:\n", " start_date = datetime(2023, 1, 1)\n", " end_date = datetime(2023, 12, 31)\n", @@ -43,21 +45,22 @@ " numeric_col2 = np.random.randint(1, 100, num_rows)\n", "\n", " # Generate random string values\n", - " string_col1 = np.random.choice(['apple', 'banana', 'cherry'], num_rows)\n", - " string_col2 = np.random.choice(['red', 'green', 'blue'], num_rows)\n", + " string_col1 = np.random.choice([\"apple\", \"banana\", \"cherry\"], num_rows)\n", + " string_col2 = np.random.choice([\"red\", \"green\", \"blue\"], num_rows)\n", "\n", " # Create the pandas DataFrame\n", " data = {\n", - " 'DateTime': datetime_col,\n", - " 'Numeric1': numeric_col1,\n", - " 'Numeric2': numeric_col2,\n", - " 'String1': string_col1,\n", - " 'String2': string_col2\n", + " \"DateTime\": datetime_col,\n", + " \"Numeric1\": numeric_col1,\n", + " \"Numeric2\": numeric_col2,\n", + " \"String1\": string_col1,\n", + " \"String2\": string_col2,\n", " }\n", "\n", " df = pd.DataFrame(data)\n", " return df\n", "\n", + "\n", "display(df_creator(2))" ] }, @@ -67,10 +70,9 @@ "metadata": {}, "outputs": [], "source": [ - "import fabduckdb\n", - "from fabduckdb import fab_functions\n", + "\"\"\"Example using a function\"\"\"\n", "\n", - "fabduckdb.register_function(\"mydfcreator\", df_creator, generates_filepath=False)" + "register_function(\"mydfcreator\", df_creator, generates_filepath=False)" ] }, { @@ -79,12 +81,14 @@ "metadata": {}, "outputs": [], "source": [ - "import fabduckdb\n", - "import duckdb\n", - "\n", - "fabduckdb.register_function(\"dfcreate\", lambda rows, cols, con=None: pd.DataFrame(np.random.rand(rows, cols)), generates_filepath=False)\n", - "\n", - "duckdb.connect().execute(\"select * from dfcreate(3,4)\").df()\n" + "\"\"\"Example using a lambda & DataFrame\"\"\"\n", + "register_function(\n", + " \"dfcreate\",\n", + " lambda rows, cols, con=None: pd.DataFrame(np.random.rand(rows, cols)),\n", + " generates_filepath=False,\n", + ")\n", + "\n", + "duckdb.connect().execute(\"select * from dfcreate(cols=4,rows=3)\").df()" ] }, { @@ -93,9 +97,15 @@ "metadata": {}, "outputs": [], "source": [ - "import fabduckdb\n", + "\"\"\"Example returning a filepath to a parquet file\"\"\"\n", "\n", - "fabduckdb.register_function(\"dfcreate\", lambda rows, cols, filename, con: pd.DataFrame(np.random.rand(rows, cols)).to_parquet(filename), generates_filepath=True)\n", + "register_function(\n", + " \"dfcreate\",\n", + " lambda rows, cols, filename, con: pd.DataFrame(\n", + " np.random.rand(rows, cols)\n", + " ).to_parquet(filename),\n", + " generates_filepath=True,\n", + ")\n", "\n", "duckdb.connect().execute(\"select * from dfcreate(3,4)\").df()" ] @@ -106,10 +116,40 @@ "metadata": {}, "outputs": [], "source": [ - "import fabduckdb\n", - "from fabduckdb import fab_functions\n", - "\n", - "fabduckdb.register_function(\"df_creator\", lambda rows, cols, con: pd.DataFrame(np.random.rand(rows, cols)), generates_filepath=False)\n", + "\"\"\"Example returning a pyarrow table\"\"\"\n", + "\n", + "register_function(\n", + " \"dfcreate_pa\",\n", + " lambda rows, cols, con=None: __import__(\"pyarrow\").table(\n", + " {\n", + " f\"col{i}\": [\n", + " \"\".join(\n", + " __import__(\"random\").choices(\n", + " __import__(\"string\").ascii_letters, k=5\n", + " )\n", + " )\n", + " for _ in range(rows)\n", + " ]\n", + " for i in range(cols)\n", + " }\n", + " ),\n", + " generates_filepath=False,\n", + ")\n", + "\n", + "duckdb.connect().execute(\"select * from dfcreate_pa(3,4)\").df()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "register_function(\n", + " \"df_creator\",\n", + " lambda rows, cols, con: pd.DataFrame(np.random.rand(rows, cols)),\n", + " generates_filepath=False,\n", + ")\n", "\n", "\n", "fab_functions.extract_and_replace_functions(\"select * from mydfcreator(1,2)\")" @@ -121,20 +161,21 @@ "metadata": {}, "outputs": [], "source": [ - "import fabduckdb\n", - "import duckdb\n", - "import pandas as pd\n", - "import numpy as np\n", - "\n", - "fabduckdb.register_function(\"dfcreate\", lambda rows, cols, filename, con: pd.DataFrame(np.random.rand(rows, cols)).to_parquet(filename), generates_filepath=True)\n", + "register_function(\n", + " \"dfcreate\",\n", + " lambda rows, cols, filename, con: pd.DataFrame(\n", + " np.random.rand(rows, cols)\n", + " ).to_parquet(filename),\n", + " generates_filepath=True,\n", + ")\n", "\n", - "duckdb.connect().execute(\"select * from dfcreate(3,4)\").df()\n" + "duckdb.connect().execute(\"select * from dfcreate(3,4)\").df()" ] } ], "metadata": { "kernelspec": { - "display_name": "fabduck1", + "display_name": "fabduckdb", "language": "python", "name": "python3" }, @@ -148,7 +189,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.3" + "version": "3.10.18" } }, "nbformat": 4, diff --git a/notebooks/loop_examples.ipynb b/notebooks/loop_examples.ipynb index e73e377..7cae66a 100644 --- a/notebooks/loop_examples.ipynb +++ b/notebooks/loop_examples.ipynb @@ -14,13 +14,13 @@ "\n", "\n", "logging.basicConfig(\n", - " format='%(asctime)s %(name)s %(levelname)-8s %(message)s',\n", + " format=\"%(asctime)s %(name)s %(levelname)-8s %(message)s\",\n", " level=logging.DEBUG,\n", - " datefmt='%Y-%m-%d %H:%M:%S')\n", + " datefmt=\"%Y-%m-%d %H:%M:%S\",\n", + ")\n", "\n", "logger = logging.getLogger(\"fab_duckdb\")\n", - "logger.setLevel(logging.DEBUG)\n", - "\n" + "logger.setLevel(logging.DEBUG)" ] }, { @@ -30,10 +30,11 @@ "outputs": [], "source": [ "import duckdb\n", - "import fabduckdb\n", "\n", "createstatement = \"CREATE or REPLACE TABLE abc as SELECT * FROM range(1,10,1) t(x);CREATE or REPLACE TABLE def as SELECT * FROM range(20,30,2) t(x)\"\n", - "loopstatement = \"loop (select * from {{x}}) over (select x from (values('abc'), ('def')) t(x))\"\n", + "loopstatement = (\n", + " \"loop (select * from {{x}}) over (select x from (values('abc'), ('def')) t(x))\"\n", + ")\n", "duckdb.execute(createstatement)\n", "duckdb.execute(loopstatement).df()" ] @@ -45,10 +46,11 @@ "outputs": [], "source": [ "import duckdb\n", - "import fabduckdb\n", "\n", "createstatement = \"CREATE or REPLACE TABLE abc as SELECT * FROM range(1,10,1) t(x);CREATE or REPLACE TABLE def as SELECT * FROM range(20,30,2) t(x)\"\n", - "loopstatement = \"loop (select * from {{x}}) over (select x from (values('abc'), ('def')) t(x))\"\n", + "loopstatement = (\n", + " \"loop (select * from {{x}}) over (select x from (values('abc'), ('def')) t(x))\"\n", + ")\n", "duckdb.default_connection.execute(createstatement)\n", "duckdb.default_connection.execute(loopstatement).df()" ] @@ -62,7 +64,6 @@ "# Embedded Loop\n", "\n", "import duckdb\n", - "import fabduckdb\n", "\n", "createstatement = \"CREATE or REPLACE TABLE abc as SELECT * FROM range(1,10,1) t(x);CREATE or REPLACE TABLE def as SELECT * FROM range(20,30,2) t(x)\"\n", "loopstatement = \"create table xyz as (loop (select * from {{x}}) over (select x from (values('abc'), ('def')) t(x)))\"\n", @@ -81,7 +82,6 @@ "# Demonstrate a more interesting Jinja2 Template\n", "\n", "import duckdb\n", - "import fabduckdb\n", "\n", "createstatement = \"CREATE or REPLACE TABLE abc as SELECT * FROM range(1,10,1) t(y);CREATE or REPLACE TABLE def as SELECT * FROM range(20,30,2) t(y)\"\n", "\n", @@ -107,7 +107,6 @@ "source": [ "# Run different SQL depending on value\n", "import duckdb\n", - "import fabduckdb\n", "\n", "createstatement = \"CREATE or REPLACE TABLE abc as SELECT * FROM range(1,10,1) t(y);CREATE or REPLACE TABLE def as SELECT * FROM range(20,30,2) t(y)\"\n", "\n", diff --git a/notebooks/magic_duckdb_examples.ipynb b/notebooks/magic_duckdb_examples.ipynb index 8bf3645..c67d069 100644 --- a/notebooks/magic_duckdb_examples.ipynb +++ b/notebooks/magic_duckdb_examples.ipynb @@ -9,7 +9,7 @@ "%load_ext magic_duckdb\n", "\n", "\n", - "import fabduckdb\n" + "import fabduckdb" ] }, { @@ -35,11 +35,14 @@ "metadata": {}, "outputs": [], "source": [ - "import fabduckdb\n", "import pandas as pd\n", "\n", "\n", - "fabduckdb.register_function(\"mydfcreator\", lambda x, con: pd.DataFrame([{f\"col{x}\": x}]), generates_filepath=False)" + "fabduckdb.register_function(\n", + " \"mydfcreator\",\n", + " lambda x, con: pd.DataFrame([{f\"col{x}\": x}]),\n", + " generates_filepath=False,\n", + ")" ] }, { diff --git a/pyproject.toml b/pyproject.toml index dffe841..eeaa821 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,3 +1,43 @@ +[project] +name = "fabduckdb" +authors = [{name = "Paul T", email = "paul@iqmo.com"}] +dynamic = ["version"] +description = "Fabulous DuckDB" +readme = "README.md" +requires-python = ">=3.10" +dependencies = [ + "duckdb>=1.3.2", + "jinja2>=3.1.6", + "sqlparse>=0.5.3", +] +classifiers = [ + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13", +] + +[project.urls] +Homepage = "https://github.com/paultiq/fabduckdb" +Repository = "https://github.com/paultiq/fabduckdb" +Issues = "https://github.com/paultiq/fabduckdb/issues" + +[build-system] +requires = ["hatchling", "uv-dynamic-versioning"] +build-backend = "hatchling.build" + +[tool.hatch.build.targets.sdist] +include = ["fabduckdb"] + +[tool.hatch.build.targets.wheel] +include = ["fabduckdb"] + +[tool.hatch.build.targets.wheel.sources] +"./fabduckdb" = "fabduckdb" + +[tool.hatch.version] +source = "uv-dynamic-versioning" + [tool.ruff] exclude = [ ".git", @@ -6,6 +46,8 @@ exclude = [ "dist", "versioneer.py", "docs/source/conf.py"] + +[tool.ruff.lint] ignore = [ #E203, #"W503", @@ -13,9 +55,151 @@ ignore = [ #"W291", "E501" ] -[tool.ruff.per-file-ignores] +[tool.ruff.lint.per-file-ignores] "__init__.py" = ["F401"] +[dependency-groups] +dev = [ + "ipykernel>=6.30.1", + "magic-duckdb>=0.2.1", + "pandas>=2.3.2", + "polars>=1.32.3", + "pre-commit-uv>=4.1.5", + "pyarrow>=21.0.0", + "pylint>=3.3.8", + "pytest>=8.4.1", + "pytest-asyncio>=1.1.0", + "pytest-cov>=6.2.1", + "pytest-randomly>=3.16.0", + "pytest-retry>=1.7.0", + "pytest-xdist>=3.8.0", +] + [tool.pyright] - # nothing - exclude = ["tests"] \ No newline at end of file +typeCheckingMode = "basic" +reportGeneralTypeIssues = false +reportPrivateImportUsage = false +reportAttributeAccessIssue = false +exclude = ["tests/**"] +ignore = ["sqlparse"] + + +[tool.pylint.messages_control] +disable = ["C1805", "I0011", "I0020", "R0401", "R0801", "R0902", "R0903", "E0611", "all"] +enable = [ + "C0104", # https://pylint.readthedocs.io/en/stable/user_guide/messages/convention/disallowed-name.html + "C0117", # 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https://pylint.readthedocs.io/en/stable/user_guide/messages/error/invalid-getnewargs-returned.html + "E0313", # https://pylint.readthedocs.io/en/stable/user_guide/messages/error/invalid-getnewargs-ex-returned.html + "E0606", # https://pylint.readthedocs.io/en/stable/user_guide/messages/error/possibly-used-before-assignment.html + "E0701", # https://pylint.readthedocs.io/en/stable/user_guide/messages/error/bad-except-order.html + "E1144", # https://pylint.readthedocs.io/en/stable/user_guide/messages/error/invalid-slice-step.html + "E1200", # https://pylint.readthedocs.io/en/stable/user_guide/messages/error/logging-unsupported-format.html + "E1201", # https://pylint.readthedocs.io/en/stable/user_guide/messages/error/logging-format-truncated.html + "E2511", # https://pylint.readthedocs.io/en/stable/user_guide/messages/error/invalid-character-carriage-return.html + "E3102", # https://pylint.readthedocs.io/en/stable/user_guide/messages/error/positional-only-arguments-expected.html + 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+[tool.pytest.ini_options] +asyncio_mode = "auto" +asyncio_default_fixture_loop_scope = "function" +retries = 1 +#retry_delay = 4 +cumulative_timing = false +#retry_outcome = "rerun" diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 64c8c4e..0000000 --- a/requirements.txt +++ /dev/null @@ -1,4 +0,0 @@ -duckdb>=0.8.0 -pandas -pyarrow -jinja2 \ No newline at end of file diff --git a/tests/test_execute.py b/tests/test_execute.py deleted file mode 100644 index 88b3761..0000000 --- a/tests/test_execute.py +++ /dev/null @@ -1,18 +0,0 @@ -import duckdb -import fabduckdb # type: ignore # noqa - - -def test_range(): - query = "execute (select 'select * from range(' || x::varchar || ')' from range(3) t(x))" - - df = duckdb.default_connection.execute(query).df() - - assert len(df) == 3 - - -def test_unionallbyname(): - statement = "execute (select 'select ' || i || ' as r' || i ||', x from range(' || i || ') t(x)' from range(4) t(i)) using ('union all by name')" - df = duckdb.default_connection.execute(statement).df() - - assert len(df) == 6 - assert len(df.columns) == 5 diff --git a/tests/test_functions.py b/tests/test_functions.py index aea455d..e22fd07 100644 --- a/tests/test_functions.py +++ b/tests/test_functions.py @@ -75,19 +75,3 @@ def test_oneposkw_longstring(): .df() ) assert len(df) == 4 and len(df.columns) == 3 - - -def test_looped_function(): - fabduckdb.register_function( - "dfcreate", - lambda rows, cols, con=None: pd.DataFrame(np.random.rand(rows, cols)), - generates_filepath=False, - ) - - with duckdb.connect() as con: - con.execute("create table abc as select x from range(1,5) t(x)") - con.execute( - "create table xyz as (loop (select * from dfcreate({{x}},{{x}})) over (select x from abc) using 'union all by name')" - ) - df = con.execute("select * from xyz").df() - assert len(df) == 10 and len(df.columns) == 4 diff --git a/tests/test_loop.py b/tests/test_loop.py deleted file mode 100644 index 34db5da..0000000 --- a/tests/test_loop.py +++ /dev/null @@ -1,23 +0,0 @@ -# missing clauses -# mismatch in on and over -import duckdb -import fabduckdb # type: ignore # noqa - - -def test_loop1(): - createstatement = "CREATE or REPLACE TABLE abc as SELECT * FROM range(1,10,1) t(x);CREATE or REPLACE TABLE def as SELECT * FROM range(20,30,2) t(x)" - loopstatement = ( - "loop (select * from {{x}}) over (select x from (values('abc'), ('def')) t(x))" - ) - duckdb.default_connection.execute(createstatement) - df = duckdb.default_connection.execute(loopstatement).df() - assert len(df) == 14 - - -def test_embedded_loop(): - createstatement = "CREATE or REPLACE TABLE abc as SELECT * FROM range(1,10,1) t(x);CREATE or REPLACE TABLE def as SELECT * FROM range(20,30,2) t(x)" - loopstatement = "create table xyz as (loop (select * from {{x}}) over (select x from (values('abc'), ('def')) t(x)))" - duckdb.default_connection.execute(createstatement) - duckdb.default_connection.execute(loopstatement) - df = duckdb.default_connection.execute("select * from xyz").df() - assert len(df) == 14 diff --git a/tests/test_parameters.py b/tests/test_parameters.py index a7ef0cf..7c902a9 100644 --- a/tests/test_parameters.py +++ b/tests/test_parameters.py @@ -14,13 +14,13 @@ def test_param1(): def test_namedparam1(): con = duckdb.connect() df = con.execute("select $test from range(10)", {"test": 123}).df() - assert len(df) == 10 and df.iloc[0][0] == 123 + assert len(df) == 10 and df.iloc[0, 0] == 123 def test_positionalparam(): con = duckdb.connect() df = con.execute("select $1, $1", [[333]], multiple_parameter_sets=True).df() - assert len(df) == 1 and df.iloc[0][0] == 333 + assert len(df) == 1 and df.iloc[0, 0] == 333 def test_param2statements(): @@ -47,7 +47,7 @@ def test_named_param_multiple(): [{"boo": 321}, {"test": 123}], multiple_parameter_sets=True, ).df() - assert len(df) == 10 and df.iloc[0][0] == 123 + assert len(df) == 10 and df.iloc[0, 0] == 123 # Testing Functions with Parameters @@ 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