Hello, I'm encountering some problems and hope to receive your advice. The version I'm using is pggb/0.7.4. Here is my code:
/public/home/software/opt/bio/software/pggb/0.7.4//pggb -i renamed.fa -n 12 -t 1 -o out
Next comes the output file: ls -lh out/ total 257K -rw-r--r-- 1 zjwang YDOYang 4.7K Nov 24 20:15 renamed.fa.a65af12.11fba48.8f32976.smooth.11-24-2025_201518.log -rw-r--r-- 1 zjwang YDOYang 1.5K Nov 24 20:15 renamed.fa.a65af12.11fba48.8f32976.smooth.11-24-2025_201518.params.yml -rw-r--r-- 1 zjwang YDOYang 0 Nov 24 20:15 renamed.fa.a65af12.alignments.wfmash.paf -rw-r--r-- 1 zjwang YDOYang 14K Nov 24 20:15 renamed.fa.a65af12.mappings.wfmash.paf
My input file format is:
>sample1#1#chr6 ATTTAACTCCATCTTTGAGAAACATTTAATAATGTAATGTGTTTGTCATACAGGGTGAATACAGATGCAC GGGAGGCCATACGGTTTAGGCAAAGGGGAGCACAAAAGTTGAAGATGAGGCGCTGCCATCAATGCTGGGA CTTCAGGCCAAGGGCAGGAGCTGAGGAAGCCACAAGGGAGGACATTTTCTGCAGTTGCCGAACCAGTAGC AACCAGGTCCTGAGAAAGCCCTCTCTTGTGGAAGAATAACTGCCAAGCAGGAAAGCTTTTCATCCTGCAA
The attachment is the output report
renamed.fa.a65af12.11fba48.8f32976.smooth.11-24-2025_201518.log
Hello, I'm encountering some problems and hope to receive your advice. The version I'm using is pggb/0.7.4. Here is my code:
/public/home/software/opt/bio/software/pggb/0.7.4//pggb -i renamed.fa -n 12 -t 1 -o outNext comes the output file:
ls -lh out/ total 257K -rw-r--r-- 1 zjwang YDOYang 4.7K Nov 24 20:15 renamed.fa.a65af12.11fba48.8f32976.smooth.11-24-2025_201518.log -rw-r--r-- 1 zjwang YDOYang 1.5K Nov 24 20:15 renamed.fa.a65af12.11fba48.8f32976.smooth.11-24-2025_201518.params.yml -rw-r--r-- 1 zjwang YDOYang 0 Nov 24 20:15 renamed.fa.a65af12.alignments.wfmash.paf -rw-r--r-- 1 zjwang YDOYang 14K Nov 24 20:15 renamed.fa.a65af12.mappings.wfmash.pafMy input file format is:
>sample1#1#chr6 ATTTAACTCCATCTTTGAGAAACATTTAATAATGTAATGTGTTTGTCATACAGGGTGAATACAGATGCAC GGGAGGCCATACGGTTTAGGCAAAGGGGAGCACAAAAGTTGAAGATGAGGCGCTGCCATCAATGCTGGGA CTTCAGGCCAAGGGCAGGAGCTGAGGAAGCCACAAGGGAGGACATTTTCTGCAGTTGCCGAACCAGTAGC AACCAGGTCCTGAGAAAGCCCTCTCTTGTGGAAGAATAACTGCCAAGCAGGAAAGCTTTTCATCCTGCAAThe attachment is the output report
renamed.fa.a65af12.11fba48.8f32976.smooth.11-24-2025_201518.log