One application of odgi position is to lift graph positions to all paths in the graph.
This is particularly useful when trying to relate a graph feature to original assemblies.
Some features, such as CpGs, are very numerous, with millions of instances in the whole graph.
While the current implementation has this function (odgi position -G -R) it is slow for a large number of queries.
Please consider optimizing odgi position to handle this use case.
One application of
odgi positionis to lift graph positions to all paths in the graph.This is particularly useful when trying to relate a graph feature to original assemblies.
Some features, such as CpGs, are very numerous, with millions of instances in the whole graph.
While the current implementation has this function (
odgi position -G -R) it is slow for a large number of queries.Please consider optimizing
odgi positionto handle this use case.