v0.29.2

Changed 32-bit int to 64-bit int when getting number of mapped reads to avoid overflow when displaying progress of how many reads have been mapped. Resolves issue #8

Fixed specifying @no-chain in the config file (previously, it was not being recognized). Thanks to @bentyeh for pointing out this bug.

Allow no-chain to take in arguments about what should be chained vs not chained (e.g. specifying @no-chain x,y means no-chain only applies to the extraction/UMI-like string named x and the extraction/UMI-like string named y; others will still be chained together during the extraction).

v0.29.1

Added --bclen= option to allow assigned final barcodes to be short or longer (of lengths 2 through 31), rather than just of length 16.

v0.29.0

New features and bug fixes: #5 and #6

v0.28.6

Fixed a critical bug when a config file has tags of different lengths and some tags were not being identified

v0.28.5

Only update in this release: when using minFinds or minFindsG without --assign, the reads that don't mean the min finds criteria will be thrown out (previously, without --assign, those options didn't do anything unless the keep or discard options were supplied).

v0.28.4

Fixed a bug which disabled demultiplexing when using --keep or --keep-grp

v0.28.3

Added LX:Z: sam tag (for recording tag ID + location found)

Fixed a bug when using -x when --keep/--keep-grp

Updated version number

v0.28.2

Improved remultiplex so that the same sample IDs get the same final barcode ID

v0.28.1

First release of splitcode