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@zwang-bioinformatics Dr. Zheng Wang's Lab at University of Miami

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    22 repositories

    • ARC

      Public
      ARC: single-model protein complex quality assessment using ensemble GNNs with strong discrimination of true interface residues
      bioinformaticsprotein-structurearc
      bioinformaticsprotein-structurearcemacaspassessment-of-protein-complexestimation-of-model-accuracy
      Python
      •0•3•0•0•Updated Aug 11, 2026Aug 11, 2026

    • CARP

      Public
      Official implementation of CARP, a graph-transformer based method for protein-RNA complex quality assessment. This repository provides pre-trained models and a …
      bioinformaticsprotein-structurerna-structure
      bioinformaticsprotein-structurerna-structureprotein-rna
      Python
      •0•2•0•0•Updated May 4, 2026May 4, 2026

    • 3D-genome-VQA

      Public
      Python
      •0•1•0•0•Updated Nov 21, 2025Nov 21, 2025

    • HiC4D-SPOT

      Public
      This repository contains the code and pretrained models for HiC4D-SPOT, a deep-learning framework designed to detect spatiotemporal anomalies in Hi-C data.
      bioinformaticsresearchai
      bioinformaticsresearchaideep-learninghicoutlier-
      Python
      •0•3•0•0•Updated Oct 16, 2025Oct 16, 2025

    • SCW

      Public
      Clojure
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • scHiGex

      Public
      This repository includes code and a pre-trained model of scHiGex for single-cell gene expression prediction.
      bioinformaticsgraphprediction
      bioinformaticsgraphpredictiongene-expressiontransformerhi-csingle-cellschigex
      Python
      •0•4•0•0•Updated Jan 27, 2025Jan 27, 2025

    • RAD21-2024

      Public
      Shell
      •0•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • EGG

      Public
      Python
      •0•2•0•0•Updated Jun 7, 2024Jun 7, 2024

    • PANDA-3D

      Public
      Protein function prediction based on alphaFold models
      Python
      •6•10•0•0•Updated May 5, 2024May 5, 2024

    • PICNIC

      Public
      Python
      •0•1•0•0•Updated Feb 28, 2024Feb 28, 2024

    • C2c

      Public
      Python
      •0•1•0•0•Updated Dec 15, 2023Dec 15, 2023

    • PANDA2

      Public
      Python
      •
      MIT License
      •1•5•2•0•Updated Nov 8, 2023Nov 8, 2023

    • HiC2MicroC

      Public
      1•5•1•0•Updated Nov 6, 2023Nov 6, 2023

    • scHiMe

      Public
      Python
      •0•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • SCL

      Public
      C++
      •0•0•0•0•Updated Jul 5, 2023Jul 5, 2023

    • DeepChIA-PET

      Public
      Python
      •0•0•1•0•Updated Jun 29, 2023Jun 29, 2023

    • HiC4D

      Public
      Python
      •0•0•1•0•Updated Jun 29, 2023Jun 29, 2023

    • ST-ChIP

      Public
      0•0•0•0•Updated Jun 28, 2023Jun 28, 2023

    • GOGO

      Public
      An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms
      Perl
      •7•19•1•0•Updated Mar 23, 2020Mar 23, 2020

    • SOV_refine

      Public
      A further refined definition of segment overlap score
      Perl
      •0•1•0•0•Updated Aug 1, 2018Aug 1, 2018

    • RFcon

      Public
      Predict protein residue-residue contact using random forest
      0•0•0•0•Updated Jul 25, 2018Jul 25, 2018

    • scHiCNorm

      Public
      A software package to eliminate systematic biases in single-cell Hi-C data
      0•1•0•0•Updated Jul 25, 2018Jul 25, 2018
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