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    22 repositories

    • starfinder

      Public
      Customized snakemake workflow for computational image processing
      Jupyter Notebook
      •
      MIT License
      •0•4•1•0•Updated Apr 29, 2026Apr 29, 2026

    • parna

      Public
      Python
      •1•1•0•0•Updated Mar 27, 2026Mar 27, 2026

    • FuseMap

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •5•3•0•0•Updated Feb 5, 2026Feb 5, 2026

    • scz_analysis

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Dec 20, 2025Dec 20, 2025

    • workshop25

      Public
      2025 Wang Lab Computational Workshop
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Dec 11, 2025Dec 11, 2025

    • probe-design

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • ClusterMap

      Public
      ClusterMap for multi-scale clustering analysis of spatial gene expression
      bioinformaticstranscriptomicscell-segmentation
      bioinformaticstranscriptomicscell-segmentationsingle-cell-analysisspatial-transcriptomicsin-situ-sequencingspatial-omics
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •12•46•6•0•Updated Jun 13, 2025Jun 13, 2025

    • amberti

      Public
      python package to run AmberTI
      Python
      •2•6•0•0•Updated May 29, 2025May 29, 2025

    • spin

      Public
      SPatial INtegration of spatially resolved transcriptomics datasets
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•18•2•0•Updated Mar 14, 2025Mar 14, 2025

    • drn-analysis

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

    • harmonics

      Public
      Harmonic analysis of spatial transcriptomics data
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 19, 2025Jan 19, 2025

    • CAST

      Public
      CAST package
      Python
      •
      MIT License
      •5•44•1•0•Updated Oct 26, 2024Oct 26, 2024

    • hepatic_recon

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Sep 30, 2024Sep 30, 2024

    • starmap-matlab

      Public
      MATLAB
      •
      MIT License
      •3•1•0•0•Updated Aug 27, 2024Aug 27, 2024

    • Multicap-analysis

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Jun 24, 2024Jun 24, 2024

    • .github

      Public
      Organization profile
      0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

    • mCNS-atlas

      Public
      Jupyter Notebook
      •4•19•2•0•Updated Mar 31, 2024Mar 31, 2024

    • RIBOmap-analysis

      Public
      Jupyter Notebook
      •1•4•0•0•Updated Nov 14, 2023Nov 14, 2023

    • mAD-analysis

      Public
      Jupyter Notebook
      •
      MIT License
      •6•8•1•0•Updated Nov 13, 2023Nov 13, 2023

    • starmap-py

      Public
      Python
      •
      MIT License
      •1•2•0•0•Updated Aug 17, 2023Aug 17, 2023

    • TEMPOmap

      Public
      This repository contains scripts for TEMPOmap.
      Jupyter Notebook
      •4•7•0•0•Updated Apr 12, 2023Apr 12, 2023

    • rna-therapeutic

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 12, 2021Nov 12, 2021
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