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@structuralbioinformatics Structural BioInformatics

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    20 repositories

    • ModCRElib

      Public
      A standalone downloadable version of ModCRE
      Python
      •0•3•0•0•Updated Jul 25, 2026Jul 25, 2026

    • SNPeBoT2

      Public
      An experimental data independent predictor of SNP effects on TF binding and disease.
      Python
      •0•0•0•0•Updated Jun 16, 2026Jun 16, 2026

    • SNPeBoT

      Public
      Predictor of Transcription Factor Allele Specific Binding
      Jupyter Notebook
      •0•0•0•0•Updated Feb 2, 2025Feb 2, 2025

    • SBILib

      Public
      a handle for protein modelling and engineering
      Python
      •
      MIT License
      •3•6•0•0•Updated Dec 24, 2024Dec 24, 2024

    • rwd-repository

      Public
      This repository contains the code used for the figures and analysis presented in the paper titled "The usage of transcriptomics datasets as sources of Real-Worl…
      R
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • EiF2alpha-Predictors

      Public
      Multiple Logistic Regression Model for predicting p-eIF2α-driven translation
      Python
      •0•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • ModCRE

      Public
      Modelling Cis-Regulatory Elements
      Python
      •1•2•0•0•Updated Jul 2, 2024Jul 2, 2024

    • Genopyc

      Public
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • SBI

      Public
      An integrated platform for the analysis of macromolecular structures and interactions
      Python
      •
      MIT License
      •2•3•0•0•Updated Nov 30, 2022Nov 30, 2022

    • CAMDA2019-DILI

      Public
      An ensemble learning approach for modeling the systems biology of drug-induced injury in human liver
      HTML
      •1•2•0•0•Updated Mar 22, 2021Mar 22, 2021

    • RADI

      Public
      C
      •
      MIT License
      •0•5•0•0•Updated Feb 26, 2021Feb 26, 2021

    • MENTA

      Public
      Profile alignments of sequences
      C
      •0•0•0•0•Updated Sep 9, 2020Sep 9, 2020

    • SPServer

      Public
      Assessment of the quality of protein folds and protein-protein interaction interfaces using statistical potentials
      Python
      •5•6•0•0•Updated Jul 24, 2020Jul 24, 2020

    • MODPIN

      Public
      Python
      •1•2•0•0•Updated Jul 17, 2020Jul 17, 2020

    • raDIMod

      Public
      Repository for ab initio 3D modeling. Using information extraced from ArchDBmap and RADI and passing it into Modeller this set of scripts allow to create protei…
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 7, 2020Jun 7, 2020

    • archdbmap

      Public
      Sequence mapping of Smotifs classified in ArchDB14
      Python
      •1•0•0•0•Updated Oct 2, 2019Oct 2, 2019

    • archdbsql

      Public
      An API to connect to ArchDB14's MySQL Database through Python
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 3, 2019Sep 3, 2019

    • amyloid

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Mar 2, 2019Mar 2, 2019

    • NETSCORE

      Public
      Gene prioritization using Gene Expression
      C
      •0•0•0•0•Updated Sep 28, 2018Sep 28, 2018

    • interactoMIX

      Public
      InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.
      serverprotein-structurecomputational-biology
      serverprotein-structurecomputational-biologyprotein-protein-interactionpublic-researchprotein-homology-modeling
      CSS
      •
      MIT License
      •2•0•0•0•Updated Jun 17, 2016Jun 17, 2016
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