RNA Bioscience Initiative (RBI)

All

87 repositories

valr
Public
Genome Interval Arithmetic in R
genome interval-arithmetic bedtools
R
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Other
•25•93•1•2•Updated Aug 6, 2025Aug 6, 2025
cpp11bigwig
Public
Read bigWig and bigBed files in R
C
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Other
•1•3•2•0•Updated Aug 4, 2025Aug 4, 2025
hesselberthlab.org
Public
Lab website
HTML
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MIT License
•0•0•0•0•Updated Aug 1, 2025Aug 1, 2025
ucsc_snapshots
Public
Robotically fetch images for specified regions from the UCSC Genome Browser
Python
•0•5•1•0•Updated Jul 31, 2025Jul 31, 2025
aa-tRNA-seq
Public
Public-facing repo for aa-tRNA-seq pre-print
Python
•0•1•0•0•Updated Jul 23, 2025Jul 23, 2025
molb-7950
Public
MOLB 7950: Informatics and Statistics for Molecular Biology
HTML
•0•4•12•3•Updated Jul 22, 2025Jul 22, 2025
raer
Public
Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
rna-seq-analysis single-cell-rna-seq bioconductor-package single-cell-analysis
C
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Other
•2•8•2•0•Updated Jul 15, 2025Jul 15, 2025
antigen-exchange-xenium
Public
Xenium analysis for Sheridan et al.
R
•0•0•0•0•Updated Jul 13, 2025Jul 13, 2025
antigen-exchange
Public
Analysis for Sheridan et al.
R
•0•0•0•0•Updated Jul 13, 2025Jul 13, 2025
aa-tRNA-seq-pipeline
Public
Snakemake pipeline to process nanopore aa-tRNA-seq data
rna-seq snakemake nanopore-sequencing
Python
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MIT License
•1•1•14•4•Updated Jun 23, 2025Jun 23, 2025
morrison-chronic-chikv
Public
Quantification of CHIKV RNA at 28 dpi using scRNA-seq
HTML
•0•0•0•0•Updated Jun 18, 2025Jun 18, 2025
morrison-chronic-chikv-xenium
Public
Quantification of CHIKV RNA at 28 dpi using spatial transcriptomics
R
•0•0•0•0•Updated Jun 17, 2025Jun 17, 2025
scraps
Public
Single-cell RNA Processing Software
Python
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MIT License
•4•11•7•0•Updated Jun 17, 2025Jun 17, 2025
purrr
Public
A functional programming toolkit for R
R
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Other
•283•0•0•0•Updated Jun 6, 2025Jun 6, 2025
yeastgenes
Public
R data package for yeast gene expression
R
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Other
•0•0•0•0•Updated Jun 2, 2025Jun 2, 2025
clustifyr
Public
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
rna-seq single-cell-rna-seq clusters marker-genes assign-identities
R
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MIT License
•15•123•0•0•Updated Apr 16, 2025Apr 16, 2025
aa-tRNA-seq-analysis-template
Public
Quarto template for aa-tRNA-seq anaysis
rna-seq-analysis quarto-template
R
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MIT License
•0•0•0•0•Updated Mar 21, 2025Mar 21, 2025
nihexporter
Public
An R data package for NIH EXPORTER data
spending grants nih
R
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Other
•13•15•1•0•Updated Mar 8, 2025Mar 8, 2025
modkit
Public
A bioinformatics tool for working with modified bases
Rust
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Other
•16•0•0•0•Updated Mar 6, 2025Mar 6, 2025
remora
Public
Methylation/modified base calling separated from basecalling.
Python
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Other
•23•0•0•0•Updated Jan 25, 2025Jan 25, 2025
squigualiser
Public
Visualise and analyse nanopore (ONT) raw signals
Python
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MIT License
•4•0•0•0•Updated Jan 24, 2025Jan 24, 2025
WarpDemuX
Public
direct RNA nanopore sequencing barcode design and demultiplexing
Jupyter Notebook
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Other
•4•0•0•0•Updated Jan 13, 2025Jan 13, 2025
rbitemplate
Public
RBI pkgdown template
R
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Other
•0•0•1•0•Updated Jan 12, 2025Jan 12, 2025
2a-peptide-search
Public
HMM models of the 2A peptide and DB search results
HTML
•0•0•2•0•Updated Jan 4, 2025Jan 4, 2025
detectrms-rs
Public
Fast detection of rna modifications sites
Rust
•0•1•1•0•Updated Dec 24, 2024Dec 24, 2024
molb-7950-data
Public
Data repository for MOLB 7950
0•0•0•0•Updated Oct 27, 2024Oct 27, 2024
rhumba
Public
Snakemake pipelines for RNA sequencing data
rna-seq rna-seq-analysis rna-seq-pipeline
C
•2•2•3•0•Updated Sep 1, 2024Sep 1, 2024
pneuro-onc-browsers
Public
Pediatric Neuro-oncology Cell Atlas
TeX
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MIT License
•0•0•1•0•Updated Aug 28, 2024Aug 28, 2024
lnsc-cell-browser
Public
LNSC cell browser
R
•0•0•1•0•Updated Aug 14, 2024Aug 14, 2024
tRNA004
Public
Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking
nanopore rnaseq trna nanopore-sequencing rna-modifications directrna trnaseq
Python
•1•5•2•0•Updated Jul 30, 2024Jul 30, 2024