Repositories list

• RNAViralMutSpec

  Public
  Analysis of SARS-CoV-2 mutations

  Jupyter Notebook

  •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• AminoAcidShift

  Public
  Amino acid shift in mitochondrial proteins is shaped by mtDNA mutational spectrum

  Jupyter Notebook

  •0•0•0•0•Updated Jul 16, 2025Jul 16, 2025

• TemperatureEffectsOnMtDNAspectra

  Public
  R

  •0•0•0•0•Updated Jun 30, 2025Jun 30, 2025

• nemu-pipeline

  Public
  The pipeline for neutral mutation spectra evaluation based on evolutionary data

  Jupyter Notebook

  •

  MIT License

  •0•0•5•0•Updated Jun 29, 2025Jun 29, 2025

• mtdna-192component-mutspec-chordata

  Public
  Jupyter Notebook

  •0•0•0•0•Updated May 29, 2025May 29, 2025

• HyberEzhiki

  Public
  Jupyter Notebook

  •0•0•0•0•Updated May 25, 2025May 25, 2025

• MCPA_osteoarthritic

  Public
  Python

  •0•0•0•0•Updated Apr 30, 2025Apr 30, 2025

• nemu-pipeline-nf

  Public
  Pipeline for accurate reconstruction of neutral mutation spectra from evolutionary data

  Nextflow

  •0•0•0•0•Updated Apr 1, 2025Apr 1, 2025

• PyMutSpec

  Public
  Python library for mutational spectra analysis

  Python

  •

  MIT License

  •0•2•2•0•Updated Mar 31, 2025Mar 31, 2025

• mtdna-mutspec-insecta

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 12, 2025Mar 12, 2025

• pr-29-trna-or-mutagenesis

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

• fish-strong-purifying-selection

  Public
  Rich Text Format

  •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• JapaneseHypothesis

  Public
  0•0•0•0•Updated Dec 24, 2024Dec 24, 2024

• DIIDhypothesis

  Public
  HTML

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• G4MutSpec

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

• OpenMtDNA

  Public
  Python

  •0•0•0•0•Updated May 17, 2024May 17, 2024

• RepRandMut

  Public
  Python

  •0•0•0•0•Updated May 16, 2024May 16, 2024

• RepEvol

  Public
  Python

  •0•0•0•0•Updated May 16, 2024May 16, 2024

• BatReps

  Public
  Python

  •0•0•0•0•Updated May 16, 2024May 16, 2024

• DeletionProbability

  Public
  R

  •0•0•0•0•Updated May 16, 2024May 16, 2024

• Hibernating_Chordata

  Public
  HTML

  •0•0•0•0•Updated Mar 15, 2024Mar 15, 2024

• GeneticHandicap

  Public
  simulations of a dynamics of slightly-deleterious and strongly deleterious mutations (SLIM, math..)

  R

  •0•0•0•0•Updated Jan 25, 2024Jan 25, 2024

• mtDNA_mutspectrum

  Public
  R

  •7•0•0•0•Updated Oct 17, 2023Oct 17, 2023

• mtdna-192component-mutspec-chordata-old

  Public
  Project to get 192-comp mutspec for all vertebrates

  Jupyter Notebook

  •1•0•0•0•Updated Jul 6, 2023Jul 6, 2023

• GlobalStructure

  Public
  replicationagingmitochondria+ 2mtdnadna-structure

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 21, 2023Jun 21, 2023

• awesome-mitochondria

  Public
  A curated list of awesome mitochondria analysis tools, databases and resources.

  0•1•0•0•Updated Jun 20, 2023Jun 20, 2023

• MitoHPC

  Public
  Shell

  •16•1•0•0•Updated May 22, 2023May 22, 2023

• Anchovy

  Public
  Jupyter Notebook

  •0•0•0•0•Updated May 19, 2023May 19, 2023

• FromMutSpecToCodonUsage

  Public
  Simulation by MutSpec

  Jupyter Notebook

  •0•0•0•0•Updated Feb 3, 2023Feb 3, 2023

• mtaminoacidshift

  Public
  0•0•0•0•Updated Jan 12, 2023Jan 12, 2023