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@lbl-cbg Computational Biosciences Group, LBNL

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    16 repositories

    • metfish

      Public
      Code for the MetFish LDRD project
      Python
      •
      Other
      •0•1•0•6•Updated Jun 4, 2026Jun 4, 2026

    • lmcontrol

      Public
      Tools for light microscopy based bioreactor control
      Jupyter Notebook
      •1•0•2•1•Updated Oct 13, 2025Oct 13, 2025

    • t5-commons

      Public
      Code required for the Taskforce5 commons project.
      Python
      •0•1•37•5•Updated Oct 8, 2025Oct 8, 2025

    • FlowKit

      Public
      A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •56•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • alphafold3

      Public
      AlphaFold 3 inference pipeline.
      Python
      •
      Other
      •1.3k•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • t5-data

      Public
      Python
      •0•1•0•0•Updated Feb 26, 2025Feb 26, 2025

    • CAT

      Public
      CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
      Python
      •
      MIT License
      •35•4•0•0•Updated Dec 5, 2024Dec 5, 2024

    • deep-taxon

      Public
      Code for using deep learning for microbial taxonomy classification
      Python
      •2•3•1•7•Updated Sep 4, 2024Sep 4, 2024

    • alphaflow

      Public
      AlphaFold Meets Flow Matching for Generating Protein Ensembles
      Python
      •
      MIT License
      •82•0•1•0•Updated Aug 23, 2024Aug 23, 2024

    • Str2Str

      Public
      Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
      Python
      •
      MIT License
      •8•0•0•0•Updated Mar 7, 2024Mar 7, 2024

    • gtnet

      Public
      The Genome Taxonomy Network for assigning microbial taxonomy to DNA sequences
      neural-networkmetagenomicsmetagenomic-analysis
      neural-networkmetagenomicsmetagenomic-analysismetagenomic-classificationtaxonomic-classificationmicrobial-taxonomy
      Python
      •
      Other
      •0•0•5•0•Updated Mar 5, 2024Mar 5, 2024

    • nwb-cloud-io

      Public
      Shell
      •0•0•0•0•Updated Feb 21, 2024Feb 21, 2024

    • ColabFold

      Public
      Making Protein folding accessible to all!
      Jupyter Notebook
      •
      MIT License
      •739•0•0•1•Updated Feb 14, 2024Feb 14, 2024

    • alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.9k•0•1•1•Updated Feb 14, 2024Feb 14, 2024

    • alphafold-old

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.9k•1•0•0•Updated Jan 23, 2024Jan 23, 2024

    • bioseq-schema

      Public
      Standard for storing biological sequence data
      0•0•0•0•Updated May 6, 2021May 6, 2021
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