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    57 repositories

    • Nef_CD4_AP2

      Public
      Integrative structure of the Nef-CD4(CD)-AP2(Δμ2-CTD) complex
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •1•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • gtuscSpc110

      Public
      Integrative model of the γTuSC-Spc110 complex
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • pol_ii_g

      Public
      Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1
      integrative-modelingcross-linking
      integrative-modelingcross-linking
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •2•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • mediator

      Public
      Modeling of the yeast Mediator complex
      electron-microscopyx-ray-crystallographyintegrative-modeling
      electron-microscopyx-ray-crystallographyintegrative-modelingcross-linkingcomparative-models
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•1•0•Updated Apr 9, 2026Apr 9, 2026

    • nbspike

      Public
      Integrative modeling of nanobody binding modes to the SARS-CoV-2 Spike protein
      PureBasic
      •
      Creative Commons Attribution Share Alike 4.0 International
      •1•1•0•0•Updated Apr 8, 2026Apr 8, 2026

    • smc56_nse256

      Public
      Integrative modeling of the Smc5/6-Nse2/5/6 complex using comparative modeling and chemical crosslinks.
      HTML
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•1•0•0•Updated Apr 8, 2026Apr 8, 2026

    • exocyst

      Public
      Integrative Modeling of Yeast Exocyst Complex
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•2•0•Updated Apr 8, 2026Apr 8, 2026

    • nup82

      Public
      Modeling of the Nup82 subcomplex of the Nuclear Pore Complex
      electron-microscopysmall-angle-xray-scatteringx-ray-crystallography
      electron-microscopysmall-angle-xray-scatteringx-ray-crystallographyintegrative-modelingcross-linkingcomparative-models
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•1•0•0•Updated Apr 8, 2026Apr 8, 2026

    • exosome

      Public
      Modeling exosome complexes from cross-link MS data
      Python
      •1•0•2•0•Updated Apr 8, 2026Apr 8, 2026

    • eif3

      Public
      Data and scripts to model eIF3 from mass spec data
      Python
      •1•1•0•0•Updated Mar 27, 2026Mar 27, 2026

    • ecm29

      Public
      Regulation of 26S proteasome via interaction with Ecm29
      integrative-modeling
      integrative-modeling
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • allosmod_benchmark

      Public
      Benchmark of the AllosMod method
      Python
      •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • Complement

      Public
      Human complement modeling
      integrative-modelingcomplementcross-linking
      integrative-modelingcomplementcross-linking
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • CSN2019

      Public
      Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •1•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • 40s-eif1-eif3

      Public
      Determination of the molecular architecture of the 40S•eIF1•eIF3 translation initiation complex
      Python
      •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • 26S-PIPs

      Public
      Modeling the structures of complexes between the 26S proteasome and proteasome interacting proteins
      integrative-modelingcross-linkingcomparative-models
      integrative-modelingcross-linkingcomparative-modelsproteasome
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • PM_NPC_Assembly

      Public
      Code for spatiotemporal modeling of the NPC Assembly Pathway
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Mar 13, 2026Mar 13, 2026

    • sampcon

      Public
      Benchmark for sampling exhaustiveness method
      Python
      •0•0•0•0•Updated Mar 13, 2026Mar 13, 2026

    • nup84

      Public
      Modeling of the Nup84 subcomplex of the Nuclear Pore Complex
      electron-microscopyx-ray-crystallographyintegrative-modeling
      electron-microscopyx-ray-crystallographyintegrative-modelingcross-linkingcomparative-models
      Python
      •1•0•3•0•Updated Feb 8, 2026Feb 8, 2026

    • npctransport

      Public
      Simulating nucleocytoplasmic transport using IMP
      Jupyter Notebook
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•1•0•0•Updated Jan 21, 2026Jan 21, 2026

    • mtorc2

      Public
      mTORC2 integrative modeling project
      Jupyter Notebook
      •0•0•0•0•Updated Sep 30, 2025Sep 30, 2025

    • TSTO

      Public
      Python
      •0•0•0•0•Updated Jun 9, 2025Jun 9, 2025

    • npc2018

      Public
      Modeling of the yeast Nuclear Pore Complex
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Apr 30, 2025Apr 30, 2025

    • nup133

      Public
      Modeling of the Nup133 subunit of the Nuclear Pore Complex
      Python
      •0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

    • pom152

      Public
      Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • GLP1R-Gs

      Public
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •1•0•0•0•Updated Jul 23, 2024Jul 23, 2024

    • NPC_Basket

      Public
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • U2OS_cellmap_structures

      Public
      Python
      •1•0•0•0•Updated Jun 3, 2024Jun 3, 2024

    • NPC_TMDs

      Public
      Python
      •0•0•0•1•Updated Apr 25, 2024Apr 25, 2024

    • tfiih

      Public
      Modeling of the TFIIH complex using chemical cross-links and electron microscopy (EM) density maps
      electron-microscopyintegrative-modelingcross-linking
      electron-microscopyintegrative-modelingcross-linkingcomparative-models
      Python
      •0•0•2•0•Updated Dec 17, 2023Dec 17, 2023
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