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    31 repositories

    • metaquantome

      Public
      Python
      •
      Apache License 2.0
      •7•5•11•2•Updated May 1, 2026May 1, 2026

    • tools-galaxyp

      Public
      Galaxy Tool Shed repositories maintained and developed by the GalaxyP community
      JavaScript
      •
      MIT License
      •62•36•63•47•Updated Apr 28, 2026Apr 28, 2026

    • CancerResearch2017

      Public
      1•0•0•0•Updated Jul 20, 2023Jul 20, 2023

    • mvpapplication-git

      Public
      The Galaxy MVP visualization plugin enables viewing of results produced from workflows integrating genomic sequencing data and mass spectrometry proteomics data…
      JavaScript
      •2•1•1•0•Updated Aug 10, 2022Aug 10, 2022

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.9k•0•0•0•Updated Jun 27, 2022Jun 27, 2022

    • proteomics-pipelines

      Public
      A repo with a proteogenomics and metaproteomics pipeline developed by Matthys Potgieter.
      Jupyter Notebook
      •
      MIT License
      •4•0•0•0•Updated Dec 1, 2021Dec 1, 2021

    • mzToSQLite

      Public
      Convert proteomics data files into a SQLite database
      Java
      •
      GNU General Public License v2.0
      •1•1•1•0•Updated Oct 28, 2021Oct 28, 2021

    • metaquantome_mcp_analysis

      Public
      Analysis scripts for the metaQuantome MCP paper
      bioinformaticsproteomicsmetaquantome
      bioinformaticsproteomicsmetaquantome
      HTML
      •
      GNU General Public License v3.0
      •4•0•1•0•Updated Feb 22, 2021Feb 22, 2021

    • psm_fragments

      Public
      PSM validation against ion fragmentation
      Python
      •0•1•0•0•Updated Oct 14, 2020Oct 14, 2020

    • egglet

      Public
      small data for eggnog-mapper testing
      Shell
      •1•0•0•0•Updated Aug 25, 2020Aug 25, 2020

    • fastg2protlib

      Public
      FASTG to Protein FASTA
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 28, 2020Jul 28, 2020

    • docker-galaxyp

      Public
      :whale: Galaxy Docker repository with tools for proteomics (GalaxyP flavour)
      proteomicsgalaxyusegalaxy
      proteomicsgalaxyusegalaxygalaxy-docker
      Dockerfile
      •
      MIT License
      •5•7•1•0•Updated Mar 4, 2019Mar 4, 2019

    • query_tabular_supplementary_material

      Public
      The information in this repository contains the Supplemental Materials for the F1000Rearch paper Improve your Galaxy text life: The Query Tabular Tool.
      MIT License
      •0•0•0•0•Updated Dec 21, 2018Dec 21, 2018

    • OpenContact

      Public
      Python
      •0•0•0•0•Updated Oct 11, 2018Oct 11, 2018

    • single_peptide

      Public
      HTML
      •2•0•0•0•Updated Sep 24, 2018Sep 24, 2018

    • ABRF2018

      Public
      CSS
      •1•0•0•0•Updated Apr 13, 2018Apr 13, 2018

    • galaxymetaproteomics

      Public
      CSS
      •1•1•0•0•Updated Apr 2, 2018Apr 2, 2018

    • protk-galaxytools

      Public
      Galaxy tool wrappers for protk
      2•0•0•0•Updated Mar 28, 2018Mar 28, 2018

    • update_nr

      Public
      script to automate updating nr database in galaxy
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 15, 2017Dec 15, 2017

    • gcc2017

      Public
      2•0•0•0•Updated Dec 5, 2017Dec 5, 2017

    • revigoGalaxy

      Public
      Mako
      •0•0•0•0•Updated Nov 30, 2017Nov 30, 2017

    • validate_fasta_database

      Public
      Galaxy tool to validate a FASTA database by comparing it to known FASTA formats.
      Java
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 17, 2017Nov 17, 2017

    • asms2017

      Public
      2•0•0•0•Updated Aug 31, 2017Aug 31, 2017

    • galaxypedu

      Public
      1•0•0•0•Updated Aug 21, 2017Aug 21, 2017

    • blast_diamond_comparison

      Public
      shell script to compare blast and diamond sequence mappers
      Shell
      •0•0•0•0•Updated Aug 8, 2017Aug 8, 2017

    • MetaproteomicsResearch2017

      Public
      CSS
      •1•0•0•0•Updated Apr 18, 2017Apr 18, 2017

    • abrf2017

      Public
      1•0•0•0•Updated Mar 23, 2017Mar 23, 2017

    • publications

      Public
      0•0•0•0•Updated Jan 24, 2017Jan 24, 2017

    • asms2016

      Public
      CSS
      •0•0•0•0•Updated Jun 8, 2016Jun 8, 2016

    • abrf2016

      Public
      Workshop at ABRF 2016 SW4: The Galaxy Platform for Multi-Omic Data Analysis and Informatics
      2•0•0•0•Updated Feb 19, 2016Feb 19, 2016
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