Repositories list

• qtlmap

  Public
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue

  Nextflow

  •

  MIT License

  •14•47•7•0•Updated Mar 25, 2025Mar 25, 2025

• eQTL-Catalogue-website

  Public
  Get up and running with EBI-themed Jekyll fast (rolled with gh-pages in mind, clone/fork suggested)

  HTML

  •

  Other

  •8•1•0•0•Updated Feb 1, 2025Feb 1, 2025

• rnaseq

  Public
  RNA-seq quantification pipeline used by the eQTL Catalogue

  Nextflow

  •

  MIT License

  •7•8•0•1•Updated Dec 9, 2024Dec 9, 2024

• eQTL-Catalogue-resources

  Public
  HTML

  •35•46•1•2•Updated Oct 30, 2024Oct 30, 2024

• eQTL-SumStats

  Public
  eQTL Catalogue Summary Statistics

  Python

  •1•3•8•12•Updated Jul 9, 2024Jul 9, 2024

• qcnorm

  Public
  This pipeline will run QC measures of both genotype and phenotype data and will normalise quantified phenotypes

  Nextflow

  •

  MIT License

  •4•5•3•0•Updated Jan 15, 2024Jan 15, 2024

• genimpute

  Public
  Portable genotype imputation pipeline used by the eQTL Catalogue

  Nextflow

  •

  Apache License 2.0

  •2•5•0•0•Updated Jan 3, 2024Jan 3, 2024

• federated-analysis

  Public
  Python

  •0•0•0•0•Updated May 26, 2022May 26, 2022

• colocalisation

  Public
  This repo contains a nextflow pipeline to do colocalisation analysis of QTLs against GWASs

  Nextflow

  •

  Apache License 2.0

  •4•3•0•0•Updated Apr 28, 2021Apr 28, 2021

• eQTL-sumstats-file-validator

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 14, 2020Apr 14, 2020

• qtl_norm_qc

  Public
  This repo contains necessary scripts to run Quality Control (QC) and Normalisation on phenotype count matrices generated by rnaseq pipeline.

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 29, 2020Jan 29, 2020