Repositories list

• orthologr

  Public
  Genome wide orthology inference and dNdS estimation

  rgenomicsspecies+ 17

  rgenomicsspeciesblastcomparative-genomicsproteomeblast-searchesorthology-inferencecomparative-genomics-studiessequence-alignments+ 10

  R

  •

  GNU General Public License v2.0

  •3030 forks in drostlab/orthologr•101101 stars in drostlab/orthologr•99 issues in drostlab/orthologr•00 pull requests in drostlab/orthologr•Updated Oct 19, 2026Oct 19, 2026

• myTAI

  Public
  Evolutionary Transcriptomics with R

  gene-setsrevolution+ 9

  gene-setsrevolutiongene-expressionconservationtranscriptomeevolutionary-transcriptomicsevo-devostudies-transcriptomesbiological-processes+ 2

  R

  •

  GNU General Public License v2.0

  •2222 forks in drostlab/myTAI•4848 stars in drostlab/myTAI•22 issues in drostlab/myTAI•00 pull requests in drostlab/myTAI•Updated Oct 18, 2026Oct 18, 2026

• diamond

  Public
  Accelerated BLAST compatible local sequence aligner.

  C++

  •

  GNU General Public License v3.0

  •205205 forks in drostlab/diamond•00 stars in drostlab/diamond•00 issues in drostlab/diamond•00 pull requests in drostlab/diamond•Updated Sep 29, 2026Sep 29, 2026

• GeneRegulatorySystems.jl

  Public
  A package to construct models of single-cell gene regulatory systems and orchestrate their simulation.

  Julia

  •

  GNU Affero General Public License v3.0

  •22 forks in drostlab/GeneRegulatorySystems.jl•33 stars in drostlab/GeneRegulatorySystems.jl•00 issues in drostlab/GeneRegulatorySystems.jl•00 pull requests in drostlab/GeneRegulatorySystems.jl•Updated Sep 24, 2026Sep 24, 2026

• LTRpred

  Public
  De novo annotation of young retrotransposons

  pipelinegenomeevolution+ 4

  pipelinegenomeevolutionltrdiversificationltr-transposonsltr-retrotransposons

  R

  •

  GNU General Public License v2.0

  •1010 forks in drostlab/LTRpred•4646 stars in drostlab/LTRpred•55 issues in drostlab/LTRpred•00 pull requests in drostlab/LTRpred•Updated Apr 24, 2026Apr 24, 2026

• philentropy

  Public
  Information Theory and Distance Quantification with R

  rstatisticsinformation-theory+ 5

  rstatisticsinformation-theorysimilarity-measuresdistance-measuresjensen-shannon-divergencedistance-quantificationparametric-distributions

  R

  •

  GNU General Public License v2.0

  •2222 forks in drostlab/philentropy•151151 stars in drostlab/philentropy•66 issues in drostlab/philentropy•11 pull request in drostlab/philentropy•Updated Dec 14, 2025Dec 14, 2025

• deepclust-data

  Public
  R

  •

  GNU General Public License v3.0

  •22 forks in drostlab/deepclust-data•22 stars in drostlab/deepclust-data•00 issues in drostlab/deepclust-data•00 pull requests in drostlab/deepclust-data•Updated Sep 14, 2025Sep 14, 2025

• deepclust_dataretrieval

  Public
  Cluster Extraction for the DeepClust Database

  Python

  •

  GNU General Public License v2.0

  •22 forks in drostlab/deepclust_dataretrieval•44 stars in drostlab/deepclust_dataretrieval•00 issues in drostlab/deepclust_dataretrieval•00 pull requests in drostlab/deepclust_dataretrieval•Updated Sep 12, 2025Sep 12, 2025

• evoGE

  Public
  Reproducible scripts for transcriptome evolution study

  R

  •22 forks in drostlab/evoGE•00 stars in drostlab/evoGE•00 issues in drostlab/evoGE•00 pull requests in drostlab/evoGE•Updated Jun 8, 2025Jun 8, 2025

• DevSeqPlant

  Public
  Web platform for plant evolutionary transcriptomics

  PHP

  •11 fork in drostlab/DevSeqPlant•00 stars in drostlab/DevSeqPlant•00 issues in drostlab/DevSeqPlant•00 pull requests in drostlab/DevSeqPlant•Updated Apr 16, 2025Apr 16, 2025

• setga

  Public
  Small library extracting a minimal subset from a given set that optimizes a given (set of) function(s).

  Python

  •

  MIT License

  •00 forks in drostlab/setga•00 stars in drostlab/setga•00 issues in drostlab/setga•00 pull requests in drostlab/setga•Updated Jul 18, 2024Jul 18, 2024

• edgynode

  Public
  Statistical assessment and simulated evolution of gene regulatory networks

  R

  •

  GNU General Public License v3.0

  •33 forks in drostlab/edgynode•44 stars in drostlab/edgynode•00 issues in drostlab/edgynode•00 pull requests in drostlab/edgynode•Updated May 23, 2024May 23, 2024

• deepclust_colabfold

  Public
  Using the DeepClust Database with ColabFold

  Python

  •

  GNU General Public License v2.0

  •22 forks in drostlab/deepclust_colabfold•77 stars in drostlab/deepclust_colabfold•00 issues in drostlab/deepclust_colabfold•00 pull requests in drostlab/deepclust_colabfold•Updated Apr 11, 2024Apr 11, 2024

• uberblast

  Public
  Seamless Integration of BLAST Alignments in R

  GNU General Public License v2.0

  •11 fork in drostlab/uberblast•00 stars in drostlab/uberblast•00 issues in drostlab/uberblast•00 pull requests in drostlab/uberblast•Updated Oct 28, 2023Oct 28, 2023

• rdiamond

  Public
  Running DIAMOND2 through R

  diamondsequencesequence-alignment+ 1

  diamondsequencesequence-alignmentaligner

  R

  •

  GNU General Public License v2.0

  •22 forks in drostlab/rdiamond•77 stars in drostlab/rdiamond•00 issues in drostlab/rdiamond•00 pull requests in drostlab/rdiamond•Updated Oct 17, 2023Oct 17, 2023

• published_phylomaps

  Public
  A Collection of Published Phylostratigraphic Maps and Divergence Maps

  33 forks in drostlab/published_phylomaps•1111 stars in drostlab/published_phylomaps•11 issue in drostlab/published_phylomaps•00 pull requests in drostlab/published_phylomaps•Updated Oct 12, 2023Oct 12, 2023

• metablastr

  Public
  Seamless Integration of BLAST Sequence Searches in R

  proteinspeciesblast+ 9

  proteinspeciesblastblast-searchesnucleotidebiological-sequencesblastingblastnblast-searchsequence-diversity+ 2

  R

  •

  GNU General Public License v2.0

  •66 forks in drostlab/metablastr•3030 stars in drostlab/metablastr•66 issues in drostlab/metablastr•11 pull request in drostlab/metablastr•Updated Sep 10, 2023Sep 10, 2023

• retrocombinator

  Public
  An R/C++ package for simulating the evolution of retrotransposons over time.

  evolutiontranspositionspeciation+ 4

  evolutiontranspositionspeciationtransposonsrecombinationretrotransposonstransposable-element

  HTML

  •33 forks in drostlab/retrocombinator•44 stars in drostlab/retrocombinator•11 issue in drostlab/retrocombinator•00 pull requests in drostlab/retrocombinator•Updated Apr 1, 2022Apr 1, 2022

• network-inference-pipeline

  Public
  Applying network-inference-toolbox to RNAseq data

  R

  •

  GNU General Public License v3.0

  •00 forks in drostlab/network-inference-pipeline•22 stars in drostlab/network-inference-pipeline•00 issues in drostlab/network-inference-pipeline•00 pull requests in drostlab/network-inference-pipeline•Updated Nov 3, 2021Nov 3, 2021

• network-inference-toolbox

  Public
  A bunch of network inference utilities packaged as Singularity containers

  R

  •

  GNU General Public License v3.0

  •00 forks in drostlab/network-inference-toolbox•11 star in drostlab/network-inference-toolbox•00 issues in drostlab/network-inference-toolbox•00 pull requests in drostlab/network-inference-toolbox•Updated Apr 22, 2021Apr 22, 2021

• homologr

  Public
  Homology inference across multiple species

  R

  •00 forks in drostlab/homologr•11 star in drostlab/homologr•00 issues in drostlab/homologr•00 pull requests in drostlab/homologr•Updated Sep 27, 2020Sep 27, 2020

• seqstats

  Public
  Biological Sequence Statistics in R

  bioinformaticsgenomicsbiological-data-analysis+ 2

  bioinformaticsgenomicsbiological-data-analysisbiological-sequencesbiological-sequence-statistics

  R

  •11 fork in drostlab/seqstats•22 stars in drostlab/seqstats•00 issues in drostlab/seqstats•00 pull requests in drostlab/seqstats•Updated Apr 26, 2020Apr 26, 2020

• patternseqr

  Public
  Sequence feature detection and classification with R

  R

  •00 forks in drostlab/patternseqr•11 star in drostlab/patternseqr•00 issues in drostlab/patternseqr•00 pull requests in drostlab/patternseqr•Updated Apr 22, 2020Apr 22, 2020

• biodbretrievr

  Public
  Retrieve and efficiently index entire biological sequence databases

  dataretrievalbiological-sequences+ 2

  dataretrievalbiological-sequencesbiological-datadatabasestoring

  00 forks in drostlab/biodbretrievr•00 stars in drostlab/biodbretrievr•00 issues in drostlab/biodbretrievr•00 pull requests in drostlab/biodbretrievr•Updated Apr 21, 2020Apr 21, 2020

• shinyDIAMOND

  Public
  A web interface to DIAMOND2

  00 forks in drostlab/shinyDIAMOND•00 stars in drostlab/shinyDIAMOND•00 issues in drostlab/shinyDIAMOND•00 pull requests in drostlab/shinyDIAMOND•Updated Apr 18, 2020Apr 18, 2020

• biomartr

  Public
  Genomic Data Retrieval with R

  R

  •2929 forks in drostlab/biomartr•00 stars in drostlab/biomartr•00 issues in drostlab/biomartr•00 pull requests in drostlab/biomartr•Updated Apr 12, 2020Apr 12, 2020

• hitparsr

  Public
  Distributed Databasing of Alignment Hit Data

  distributed-databasedistributed-storagedistributed-file-system

  distributed-databasedistributed-storagedistributed-file-system

  00 forks in drostlab/hitparsr•00 stars in drostlab/hitparsr•00 issues in drostlab/hitparsr•00 pull requests in drostlab/hitparsr•Updated Apr 7, 2020Apr 7, 2020