Repositories list

• vSNP3

  Public
  vSNP -- validate SNPs

  bam-filessnpspipeline+ 16

  bam-filessnpspipelinegenomicsphylogeneticsinfluenzawgshigh-throughput-sequencingbwa-memtuberculosis+ 9

  Python

  •

  GNU General Public License v3.0

  •33 forks•1414 stars•33 issues•11 pull request•Updated Oct 1, 2026Oct 1, 2026

• phylogenetic-tree-html-viewer

  Public
  View, reroot, color and share phylogenetic trees in your browser, with branch lengths as SNP counts. Nothing to install, and your data never leaves your compute…

  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 25, 2026Sep 25, 2026

• GenoFLU

  Public
  Influenza data pipeline to automate genotyping assignment

  Python

  •

  GNU General Public License v3.0

  •1111 forks•4545 stars•22 issues•00 pull requests•Updated Sep 10, 2026Sep 10, 2026

• nvsl_bioinformatic_training

  Public
  The NVSL Bioinformatics Workshop will feature training on command-line bioinformatic tools, processes, and resources routinely used at NVSL for diagnostic testi…

  HTML

  •11 fork•11 star•00 issues•00 pull requests•Updated Jul 21, 2026Jul 21, 2026

• vSNP

  Public archive
  vSNP -- validate SNPs

  bam-filessnpspipeline+ 13

  bam-filessnpspipelinegenomicsvcfphylogeneticssnpwgshigh-throughput-sequencinghigh+ 6

  Python

  •

  GNU General Public License v3.0

  •1212 forks•2222 stars•44 issues•00 pull requests•Updated Jun 24, 2026Jun 24, 2026

• Flumina

  Public
  A pipeline for the analysis of Illumina sequence data from Influenza viruses

  R

  •

  GNU General Public License v3.0

  •22 forks•11 star•00 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• vsnp3_test_dataset

  Public
  Dataset for testing vSNP version 3 installation

  11 fork•00 stars•00 issues•00 pull requests•Updated Feb 9, 2026Feb 9, 2026

• vSNP_reference_options

  Public
  vSNP supporting files

  GNU General Public License v3.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Sep 21, 2021Sep 21, 2021

• minimum_fastqs

  Public
  testing files: smallest file size and still complete through vSNP_step1.py

  11 fork•00 stars•00 issues•00 pull requests•Updated Jan 7, 2020Jan 7, 2020

• vcf_test_files

  Public
  A small set of VCFs with expected output tables for script testing

  11 fork•00 stars•00 issues•00 pull requests•Updated Jan 28, 2019Jan 28, 2019

• fastq_data_set-brucella

  Public
  Brucella FASTQ test files

  11 fork•00 stars•00 issues•00 pull requests•Updated Sep 17, 2018Sep 17, 2018

• fastq_data_set-tb_complex

  Public
  11 fork•00 stars•00 issues•00 pull requests•Updated May 31, 2017May 31, 2017