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    • easifish

      Public
      Nextflow
      BSD 3-Clause "New" or "Revised" License
      1100Updated Apr 10, 2026Apr 10, 2026
    • Browse, share, and publish OME-Zarr data
      TypeScript
      BSD 3-Clause "New" or "Revised" License
      42203Updated Apr 10, 2026Apr 10, 2026
    • Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
      Java
      GNU General Public License v2.0
      2433306Updated Apr 10, 2026Apr 10, 2026
    • Unified authorization service for datasets (Connectomics)
      Python
      0000Updated Apr 10, 2026Apr 10, 2026
    • deep learning for acoustic signals
      Python
      BSD 3-Clause "New" or "Revised" License
      62451Updated Apr 10, 2026Apr 10, 2026
    • Pipeline to process electrophysiology data.
      Python
      0060Updated Apr 10, 2026Apr 10, 2026
    • Lightweight custom REST API for ElasticSearch queries
      JavaScript
      GNU General Public License v3.0
      0000Updated Apr 10, 2026Apr 10, 2026
    • Pipeline scripts and tools for reconstructing Electron Microscopy volumes.
      Python
      BSD 3-Clause "New" or "Revised" License
      3408Updated Apr 10, 2026Apr 10, 2026
    • This package provides a unified entry point and organized task modules for managing N5/Zarr dataset conversions and downsampling. It centralizes your workflow i…
      Python
      BSD 3-Clause "New" or "Revised" License
      3480Updated Apr 9, 2026Apr 9, 2026
    • Presentation and resources on AI-assisted software development practices
      0300Updated Apr 9, 2026Apr 9, 2026
    • Utilities for Data and Information Services
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      12141Updated Apr 9, 2026Apr 9, 2026
    • Website incorporating @janelia/web-vol-viewer for direct volume rendering of neuronbridge matches
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      0000Updated Apr 9, 2026Apr 9, 2026
    • Packages for the Unity game engine, emphasizing animal studies in VR.
      C#
      Other
      131873Updated Apr 8, 2026Apr 8, 2026
    • Running compute-intense parts of BigStitcher distributed
      Java
      BSD 2-Clause "Simplified" License
      1730192Updated Apr 8, 2026Apr 8, 2026
    • Brochure website for the Janelia Workstation
      HTML
      BSD 3-Clause "New" or "Revised" License
      0001Updated Apr 8, 2026Apr 8, 2026
    • Nextflow modules for use with nf-core tooling
      Nextflow
      BSD 3-Clause "New" or "Revised" License
      0100Updated Apr 7, 2026Apr 7, 2026
    • HortaCloud - 3D annotation platform for large microscopy data
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      110490Updated Apr 7, 2026Apr 7, 2026
    • SAM2 deployed with Triton Inference Server
      Python
      0300Updated Apr 7, 2026Apr 7, 2026
    • JavaScript
      BSD 3-Clause "New" or "Revised" License
      0000Updated Apr 6, 2026Apr 6, 2026
    • Containers for workflow plugins
      Python
      BSD 3-Clause "New" or "Revised" License
      0001Updated Apr 6, 2026Apr 6, 2026
    • wrapper to batch jobs to cluster
      Python
      BSD 3-Clause "New" or "Revised" License
      1100Updated Apr 3, 2026Apr 3, 2026
    • Workflow to extract, process, and curate RNA 3D structural data from PDB for structure prediction tasks
      Python
      BSD 3-Clause "New" or "Revised" License
      1510Updated Apr 3, 2026Apr 3, 2026
    • Python code for the nf-cellpose pipeline
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Apr 2, 2026Apr 2, 2026
    • EM/LM neuron search
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      15017Updated Apr 1, 2026Apr 1, 2026
    • Various tools used by EASI-FISH pipeline for processing spots
      Python
      0000Updated Apr 1, 2026Apr 1, 2026
    • jacs-cm

      Public
      JACS Configuration Management
      Shell
      Other
      28173Updated Mar 31, 2026Mar 31, 2026
    • bigstream

      Public
      Tools for distributed alignment of massive images
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      2595133Updated Mar 31, 2026Mar 31, 2026
    • AWS Services for NeuronBridge
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      22019Updated Mar 31, 2026Mar 31, 2026
    • 3D Cell Annotation Tool for C. elegans using Napari
      Python
      0000Updated Mar 30, 2026Mar 30, 2026
    • JavaScript
      BSD 3-Clause "New" or "Revised" License
      0200Updated Mar 30, 2026Mar 30, 2026
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