From ff9595ff52b02d6d08753e2e6f72f1fad1e87cd8 Mon Sep 17 00:00:00 2001 From: Ulrike Schlegel Date: Sat, 18 Jan 2025 15:33:02 +0100 Subject: [PATCH] UBERON_ungrouped-A05 --- .../UBERONParcellation/hypothalamus.jsonld | 12 ++++------ .../UBERONParcellation/induseumGriseum.jsonld | 16 ++++--------- .../inferiorColliculus.jsonld | 12 +++------- .../inferiorLongitudinalFasciculus.jsonld | 11 ++++----- .../inferiorOccipitofrontalFasciculus.jsonld | 9 ++++---- .../inferiorOlivaryComplex.jsonld | 18 ++++----------- .../inferiorPetrosalSinus.jsonld | 17 ++++++++++++++ .../inferiorReticularFormation.jsonld | 15 ++++++++++++ .../inferiorSagittalSinus.jsonld | 15 ++++++++++++ .../inferiorThalamicPeduncle.jsonld | 23 +++++++++++++++++++ .../UBERONParcellation/insula.jsonld | 17 ++++---------- ...eafletOfTheLateralGeniculateComplex.jsonld | 12 ++++------ .../intermediateAcousticStria.jsonld | 12 +++++----- .../intermediateHypothalamicRegion.jsonld | 12 ++++------ .../intermediatePartOfHypophysis.jsonld | 12 ++++------ .../intermediateReticularFormation.jsonld | 15 ++++++++++++ .../internalArcuateFiberBundle.jsonld | 10 ++++---- .../internalMedullaryLaminaOfThalamus.jsonld | 8 +++---- ...terstitialPartOfHyperpalliumApicale.jsonld | 15 ++++++++++++ .../interthalamicAdhesion.jsonld | 6 ++--- .../UBERONParcellation/interveningZone.jsonld | 17 ++++++++++++++ .../interventricularForamenOfCNS.jsonld | 20 ++++++++++++++++ .../intralaminarNuclearGroup.jsonld | 9 +++----- .../intrinsicNeuronalCircuit.jsonld | 18 +++++++++++++++ .../islaMagnaOfCalleja.jsonld | 8 +++---- .../UBERONParcellation/islandOfCalleja.jsonld | 12 ++++------ .../UBERONParcellation/jugalRamule.jsonld | 15 ++++++++++++ .../juxtarestiformBody.jsonld | 9 ++++---- .../laminaOfSeptumPellucidum.jsonld | 8 +++---- ...aminaTerminalisOfCerebralHemisphere.jsonld | 15 ++++++++++++ .../UBERONParcellation/lapillus.jsonld | 18 +++++++++++++++ .../laryngeusVentralis.jsonld | 15 ++++++++++++ .../lateralCerebellomedullaryCistern.jsonld | 17 ++++++++++++++ .../UBERONParcellation/lateralDivision.jsonld | 15 ++++++++++++ .../lateralEminenceOfHypophysis.jsonld | 8 +++++-- .../lateralForebrainBundle.jsonld | 15 ++++++++++++ .../lateralGeniculateBody.jsonld | 13 +++-------- .../lateralGlobusPallidus.jsonld | 21 ++++------------- .../lateralGranularEminence.jsonld | 15 ++++++++++++ .../lateralLemniscus.jsonld | 11 ++++----- .../lateralLongitudinalStria.jsonld | 17 ++++++++++++++ ...eralMedullaryLaminaOfGlobusPallidus.jsonld | 13 +++-------- .../lateralMedullaryReticularComplex.jsonld | 20 ++++++++++++++++ .../lateralNuclearGroupOfThalamus.jsonld | 8 +++---- .../UBERONParcellation/lateralOcellus.jsonld | 15 ++++++++++++ .../UBERONParcellation/lateralPallium.jsonld | 19 +++++++++++++++ .../lateralPesLemniscus.jsonld | 13 ++++------- .../lateralRecessOfThirdVetricle.jsonld | 17 ++++++++++++++ .../lateralSeptalComplex.jsonld | 9 +++++--- .../lateralZoneOfHypothalamus.jsonld | 18 +++++++++++++++ .../UBERONParcellation/hypothalamus.jsonld | 12 ++++------ .../UBERONParcellation/induseumGriseum.jsonld | 16 ++++--------- .../inferiorColliculus.jsonld | 12 +++------- .../inferiorLongitudinalFasciculus.jsonld | 11 ++++----- .../inferiorOccipitofrontalFasciculus.jsonld | 9 ++++---- .../inferiorOlivaryComplex.jsonld | 18 ++++----------- .../inferiorPetrosalSinus.jsonld | 17 ++++++++++++++ .../inferiorReticularFormation.jsonld | 15 ++++++++++++ .../inferiorSagittalSinus.jsonld | 15 ++++++++++++ .../inferiorThalamicPeduncle.jsonld | 23 +++++++++++++++++++ .../UBERONParcellation/insula.jsonld | 17 ++++---------- ...eafletOfTheLateralGeniculateComplex.jsonld | 12 ++++------ .../intermediateAcousticStria.jsonld | 12 +++++----- .../intermediateHypothalamicRegion.jsonld | 12 ++++------ .../intermediatePartOfHypophysis.jsonld | 12 ++++------ .../intermediateReticularFormation.jsonld | 15 ++++++++++++ .../internalArcuateFiberBundle.jsonld | 10 ++++---- .../internalMedullaryLaminaOfThalamus.jsonld | 8 +++---- ...terstitialPartOfHyperpalliumApicale.jsonld | 15 ++++++++++++ .../interthalamicAdhesion.jsonld | 6 ++--- .../UBERONParcellation/interveningZone.jsonld | 17 ++++++++++++++ .../interventricularForamenOfCNS.jsonld | 20 ++++++++++++++++ .../intralaminarNuclearGroup.jsonld | 9 +++----- .../intrinsicNeuronalCircuit.jsonld | 18 +++++++++++++++ .../islaMagnaOfCalleja.jsonld | 8 +++---- .../UBERONParcellation/islandOfCalleja.jsonld | 12 ++++------ .../UBERONParcellation/jugalRamule.jsonld | 15 ++++++++++++ .../juxtarestiformBody.jsonld | 9 ++++---- .../laminaOfSeptumPellucidum.jsonld | 8 +++---- ...aminaTerminalisOfCerebralHemisphere.jsonld | 15 ++++++++++++ .../UBERONParcellation/lapillus.jsonld | 18 +++++++++++++++ .../laryngeusVentralis.jsonld | 15 ++++++++++++ .../lateralCerebellomedullaryCistern.jsonld | 17 ++++++++++++++ .../UBERONParcellation/lateralDivision.jsonld | 15 ++++++++++++ .../lateralEminenceOfHypophysis.jsonld | 8 +++++-- .../lateralForebrainBundle.jsonld | 15 ++++++++++++ .../lateralGeniculateBody.jsonld | 13 +++-------- .../lateralGlobusPallidus.jsonld | 21 ++++------------- .../lateralGranularEminence.jsonld | 15 ++++++++++++ .../lateralLemniscus.jsonld | 11 ++++----- .../lateralLongitudinalStria.jsonld | 17 ++++++++++++++ ...eralMedullaryLaminaOfGlobusPallidus.jsonld | 13 +++-------- .../lateralMedullaryReticularComplex.jsonld | 20 ++++++++++++++++ .../lateralNuclearGroupOfThalamus.jsonld | 8 +++---- .../UBERONParcellation/lateralOcellus.jsonld | 15 ++++++++++++ .../UBERONParcellation/lateralPallium.jsonld | 19 +++++++++++++++ .../lateralPesLemniscus.jsonld | 13 ++++------- .../lateralRecessOfThirdVetricle.jsonld | 17 ++++++++++++++ .../lateralSeptalComplex.jsonld | 9 +++++--- .../lateralZoneOfHypothalamus.jsonld | 18 +++++++++++++++ .../UBERONParcellation/hypothalamus.jsonld | 12 ++++------ .../UBERONParcellation/induseumGriseum.jsonld | 16 ++++--------- .../inferiorColliculus.jsonld | 12 +++------- .../inferiorLongitudinalFasciculus.jsonld | 11 ++++----- .../inferiorOccipitofrontalFasciculus.jsonld | 9 ++++---- .../inferiorOlivaryComplex.jsonld | 18 ++++----------- .../inferiorPetrosalSinus.jsonld | 17 ++++++++++++++ .../inferiorReticularFormation.jsonld | 15 ++++++++++++ .../inferiorSagittalSinus.jsonld | 15 ++++++++++++ .../inferiorThalamicPeduncle.jsonld | 23 +++++++++++++++++++ .../UBERONParcellation/insula.jsonld | 17 ++++---------- ...eafletOfTheLateralGeniculateComplex.jsonld | 12 ++++------ .../intermediateAcousticStria.jsonld | 12 +++++----- .../intermediateHypothalamicRegion.jsonld | 12 ++++------ .../intermediatePartOfHypophysis.jsonld | 12 ++++------ .../intermediateReticularFormation.jsonld | 15 ++++++++++++ .../internalArcuateFiberBundle.jsonld | 10 ++++---- .../internalMedullaryLaminaOfThalamus.jsonld | 8 +++---- ...terstitialPartOfHyperpalliumApicale.jsonld | 15 ++++++++++++ .../interthalamicAdhesion.jsonld | 6 ++--- .../UBERONParcellation/interveningZone.jsonld | 17 ++++++++++++++ .../interventricularForamenOfCNS.jsonld | 20 ++++++++++++++++ .../intralaminarNuclearGroup.jsonld | 9 +++----- .../intrinsicNeuronalCircuit.jsonld | 18 +++++++++++++++ .../islaMagnaOfCalleja.jsonld | 8 +++---- .../UBERONParcellation/islandOfCalleja.jsonld | 12 ++++------ .../UBERONParcellation/jugalRamule.jsonld | 15 ++++++++++++ .../juxtarestiformBody.jsonld | 9 ++++---- .../laminaOfSeptumPellucidum.jsonld | 8 +++---- ...aminaTerminalisOfCerebralHemisphere.jsonld | 15 ++++++++++++ .../UBERONParcellation/lapillus.jsonld | 18 +++++++++++++++ .../laryngeusVentralis.jsonld | 15 ++++++++++++ .../lateralCerebellomedullaryCistern.jsonld | 17 ++++++++++++++ .../UBERONParcellation/lateralDivision.jsonld | 15 ++++++++++++ .../lateralEminenceOfHypophysis.jsonld | 8 +++++-- .../lateralForebrainBundle.jsonld | 15 ++++++++++++ .../lateralGeniculateBody.jsonld | 13 +++-------- .../lateralGlobusPallidus.jsonld | 21 ++++------------- .../lateralGranularEminence.jsonld | 15 ++++++++++++ .../lateralLemniscus.jsonld | 11 ++++----- .../lateralLongitudinalStria.jsonld | 17 ++++++++++++++ ...eralMedullaryLaminaOfGlobusPallidus.jsonld | 13 +++-------- .../lateralMedullaryReticularComplex.jsonld | 20 ++++++++++++++++ .../lateralNuclearGroupOfThalamus.jsonld | 8 +++---- .../UBERONParcellation/lateralOcellus.jsonld | 15 ++++++++++++ .../UBERONParcellation/lateralPallium.jsonld | 19 +++++++++++++++ .../lateralPesLemniscus.jsonld | 13 ++++------- .../lateralRecessOfThirdVetricle.jsonld | 17 ++++++++++++++ .../lateralSeptalComplex.jsonld | 9 +++++--- .../lateralZoneOfHypothalamus.jsonld | 18 +++++++++++++++ 150 files changed, 1482 insertions(+), 603 deletions(-) create mode 100644 instances/latest/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/intermediateReticularFormation.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/interstitialPartOfHyperpalliumApicale.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/interveningZone.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/interventricularForamenOfCNS.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/intrinsicNeuronalCircuit.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/jugalRamule.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/laminaTerminalisOfCerebralHemisphere.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/lapillus.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/laryngeusVentralis.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/lateralCerebellomedullaryCistern.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/lateralDivision.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/lateralForebrainBundle.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/lateralGranularEminence.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/lateralLongitudinalStria.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/lateralMedullaryReticularComplex.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/lateralOcellus.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/lateralPallium.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/lateralRecessOfThirdVetricle.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/lateralZoneOfHypothalamus.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/intermediateReticularFormation.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/interstitialPartOfHyperpalliumApicale.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/interveningZone.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/interventricularForamenOfCNS.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/intrinsicNeuronalCircuit.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/jugalRamule.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/laminaTerminalisOfCerebralHemisphere.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/lapillus.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/laryngeusVentralis.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/lateralCerebellomedullaryCistern.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/lateralDivision.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/lateralForebrainBundle.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/lateralGranularEminence.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/lateralLongitudinalStria.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/lateralMedullaryReticularComplex.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/lateralOcellus.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/lateralPallium.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/lateralRecessOfThirdVetricle.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/lateralZoneOfHypothalamus.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/intermediateReticularFormation.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/interstitialPartOfHyperpalliumApicale.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/interveningZone.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/interventricularForamenOfCNS.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/intrinsicNeuronalCircuit.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/jugalRamule.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/laminaTerminalisOfCerebralHemisphere.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/lapillus.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/laryngeusVentralis.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/lateralCerebellomedullaryCistern.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/lateralDivision.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/lateralForebrainBundle.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/lateralGranularEminence.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/lateralLongitudinalStria.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/lateralMedullaryReticularComplex.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/lateralOcellus.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/lateralPallium.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/lateralRecessOfThirdVetricle.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/lateralZoneOfHypothalamus.jsonld diff --git a/instances/latest/terminologies/UBERONParcellation/hypothalamus.jsonld b/instances/latest/terminologies/UBERONParcellation/hypothalamus.jsonld index c0c3b6a0e..8c42e1749 100644 --- a/instances/latest/terminologies/UBERONParcellation/hypothalamus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/hypothalamus.jsonld @@ -4,17 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/hypothalamus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Hypothalamus' is a regional part of brain. It is part of the limbic system and thalamic complex.", - "description": "Ventral part of the diencephalon extending from the region of the optic chiasm to the caudal border of the mammillary bodies and forming the inferior and lateral walls of the third ventricle.The ventral topographic division of the interbrain. The first adequate description of the hypothalamus as a layer of gray matter surrounding the lower half of the third ventricle (Galen, c173) was provided by Wharton (1656, see 1966 translation, p. 170). His (1893, pp. 159-162) introduced the term but assigned the preoptic region (Swanson, 1976, pp. 229-235) of the hypothalamus to the telencephalon (His, 1893b). The definition here was introduced for vertebrates by Kuhlenbeck (1927, p. 67, Ch. 9).", + "definition": "Is a regional part of brain. Is part of the limbic system and the thalamic complex. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001898) ('is_a' and 'relationship')]", + "description": "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001898)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105177", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001898#hypothalamus-1", "name": "hypothalamus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001898", "synonym": [ - "Hy", - "Hypencephalon", - "Preoptico-hypothalamic area", - "Preoptico-hypothalamic region", - "hypothalamus" + "preoptico-hypothalamic area", + "preoptico-hypothalamic region" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/induseumGriseum.jsonld b/instances/latest/terminologies/UBERONParcellation/induseumGriseum.jsonld index 0b9d5276f..9aaa05a0c 100644 --- a/instances/latest/terminologies/UBERONParcellation/induseumGriseum.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/induseumGriseum.jsonld @@ -4,22 +4,14 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/induseumGriseum", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Induseum griseum' is a white matter of limbic lobe and stria of telencephalon. It is part of the hippocampal formation and supracallosal gyrus.", - "description": "Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed)", + "definition": "Is a white matter of limbic lobe and stria of telencephalon. Is part of the hippocampal formation and the supracallosal gyrus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015793) ('is_a' and 'relationship')]", + "description": "Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015793)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105421", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015793#induseum-griseum", "name": "induseum griseum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015793", "synonym": [ - "dorsal hippocampal continuation", - "gray stria of Lancisi", - "gyrus epicallosus", - "gyrus indusium griseum", - "IG", - "indusium griseum", - "superior part of intralimbic gyrus", - "superior segment of intralimbic gyrus", - "supracallosal gyrus", - "supracommissural hippocampus" + "indusium griseum" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorColliculus.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorColliculus.jsonld index 2685ea233..044db0a72 100644 --- a/instances/latest/terminologies/UBERONParcellation/inferiorColliculus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/inferiorColliculus.jsonld @@ -4,22 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorColliculus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Inferior colliculus' is a regional part of brain. It is part of the corpora quadrigemina.", - "description": "Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM).", + "definition": "Is a regional part of brain. Is part of the corpora quadrigemina. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001946) ('is_a' and 'relationship')]", + "description": "Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001946)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105436", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001946#inferior-colliculus-1", "name": "inferior colliculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001946", "synonym": [ "caudal colliculus", - "colliculus caudalis", - "colliculus inferior", - "corpus bigeminalis caudalis", - "corpus bigeminum posterioris", - "corpus quadrigeminum inferius", - "IC", - "inferior colliculi", "posterior colliculus", "posterior corpus quadrigeminum" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld index ba40ee51d..42ea27764 100644 --- a/instances/latest/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld @@ -4,15 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorLongitudinalFasciculus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "", - "description": "The 'inferior longitudinal fasciculus' is a white matter fibre bundle. It is a cerebral nerve fasciculus, connecting the temporal and occipital lobe.", + "definition": "Is a cerebral nerve fasciculus. Is part of the white matter of telencephalon and the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034743) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0724061", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034743#inferior-longitudinal-fasciculus", "name": "inferior longitudinal fasciculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034743", - "synonym": [ - "external sagittal stratum", - "fasciculus longitudinalis inferior", - "ilf" - ] + "synonym": null } + diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld index 29b0aacbd..b370bf24f 100644 --- a/instances/latest/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld @@ -4,15 +4,14 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorOccipitofrontalFasciculus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "", - "description": "The 'inferior occipitofrontal fasciculus' is a white matter fibre bundle. It is the inferior part of the occipitofrontal fasciculus.", + "definition": "Is an occipitofrontal fasciculus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034753)]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731728", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034753#inferior-occipitofrontal-fasciculus", "name": "inferior occipitofrontal fasciculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034753", "synonym": [ - "fasciculus occipito-frontalis inferior", - "fasciculus occipitofrontalis inferior", - "inferior fronto-occipital fasciculus" + "inferior occipitofrontal fasciculus" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld index 3d15d90b5..b984466b1 100644 --- a/instances/latest/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld @@ -4,26 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorOlivaryComplex", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Inferior olivary complex' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the olivary body.", - "description": "Largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements.", + "definition": "Is a nuclear complex of neuraxis and gray matter of hindbrain. Is part of the olivary body. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002127) ('is_a' and 'relationship')]", + "description": "Largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002127)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105448", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002127#inferior-olivary-complex-1", "name": "inferior olivary complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002127", "synonym": [ - "caudal olivary nuclei", - "complexus olivaris inferior", - "complexus olivaris inferior; nuclei olivares inferiores", - "inferior olivary complex (Vieussens)", "inferior olivary nuclear complex", - "inferior olivary nuclei", - "inferior olivary nucleus", "inferior olive", - "nuclei olivares caudales", - "nuclei olivares inferiores", - "nucleus olivaris caudalis", - "nucleus olivaris inferior", - "oliva", - "regio olivaris inferior" + "oliva" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld new file mode 100644 index 000000000..fd1e702cd --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorPetrosalSinus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a paired venous dural sinus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007160)]", + "description": "The inferior petrosal sinus, within the human head, is an area beneath the brain, which allows blood veins to span the area, from the center of the head downward. It drains from the cavernous sinus (beneath the brain) to the sigmoid sinuses above the internal jugular vein. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007160)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007160#inferior-petrosal-sinus", + "name": "inferior petrosal sinus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007160", + "synonym": [ + "sinus petrosal inferior" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld new file mode 100644 index 000000000..3d1f103cd --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorReticularFormation", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nucleus of medulla oblongata. Is part of the medial column. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000523) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000523#inferior-reticular-formation", + "name": "inferior reticular formation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000523", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld new file mode 100644 index 000000000..385739ae7 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorSagittalSinus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a sagittal sinus. Is part of the tentorial sinus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007152) ('is_a' and 'relationship')]", + "description": "An intracranial venous sinus that lies in a midline location along the lower free border of the falx cerebri of the brain. The sinus receives blood from the great cerebral vein and joins the superior sagittal sinus posteriorly. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007152)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007152#inferior-sagittal-sinus", + "name": "inferior sagittal sinus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007152", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld new file mode 100644 index 000000000..209178a54 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld @@ -0,0 +1,23 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorThalamicPeduncle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a peduncle of thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022242)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022242#inferior-thalamic-peduncle", + "name": "inferior thalamic peduncle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022242", + "synonym": [ + "inferior peduncle", + "pedunculus inferior thalami", + "pedunculus thalami caudalis", + "pedunculus thalami inferior", + "pedunculus thalamicus inferior", + "temporal peduncle", + "temporal thalamic peduncle" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/insula.jsonld b/instances/latest/terminologies/UBERONParcellation/insula.jsonld index 8534e0613..846975f52 100644 --- a/instances/latest/terminologies/UBERONParcellation/insula.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/insula.jsonld @@ -4,28 +4,21 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/insula", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "Gray matter of the insular region of the neocortex. In gyrencephalic animals, it is part of the insular lobe and lies in the depths of the lateral fissure and covered by portions of the frontal, parietal and temporal lobes. It includes Brodmann areas 13-16.", - "description": "'Insula' is a cerebral hemisphere gray matter. It is part of the cerebral cortex.", + "definition": "Is a cerebral hemisphere gray matter. Is part of the cerebral cortex. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002022) ('is_a' and 'relationship')]", + "description": "Gray matter of the insular region of the neocortex. In gyrencephalic animals, it is part of the insular lobe and lies in the depths of the lateral fissure and covered by portions of the frontal, parietal and temporal lobes. It includes Brodmann areas 13-16. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002022)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105519", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002022#insula-1", "name": "insula", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002022", "synonym": [ "central lobe", - "cortex insularis", "cortex of island", - "iNS", - "insula cerebri", "insula lobule", - "insula of Reil", - "insula Reilii", - "insular cortex", - "insular gyrus", + "insular lobe", "insular lobe", "insular region", - "insulary cortex", "island of Reil", - "lobus insularis", - "morphological insula" + "lobus insularis" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld b/instances/latest/terminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld index 49990d56d..ce1ad3a7e 100644 --- a/instances/latest/terminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld @@ -4,16 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Intergeniculate leaflet of the lateral geniculate complex' is a regional part of brain. It is part of the lateral geniculate body.", - "description": "", + "definition": "Is a regional part of brain. Is part of the lateral geniculate body. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035975) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105563", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035975#intergeniculate-leaflet-of-the-lateral-geniculate-complex", "name": "intergeniculate leaflet of the lateral geniculate complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035975", - "synonym": [ - "IGL", - "intergeniculate leaflet", - "intergeniculate leaflet of the lateral geniculate complex", - "lateral geniculate complex" - ] + "synonym": null } + diff --git a/instances/latest/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld b/instances/latest/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld index 8e7b1ff8b..f33d90300 100644 --- a/instances/latest/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld @@ -4,16 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intermediateAcousticStria", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Intermediate acoustic stria' is a stria of neuraxis and white matter of pontine tegmentum.", - "description": "White matter structure containing axons arising from cochlear nuclear complex (Brodal, Neurological Anatomy, 3rd ed, 1985, pg 609)", + "definition": "Is a stria of neuraxis and white matter of pontine tegmentum. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002952)]", + "description": "White matter structure containing axons arising from cochlear nuclear complex (Brodal, Neurological Anatomy, 3rd ed, 1985, pg 609) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002952)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105568", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002952#intermediate-acoustic-stria-1", "name": "intermediate acoustic stria", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002952", "synonym": [ - "commissure of Held", - "intermediate acoustic stria (Held)", - "Intermediate acoustic stria of Held", - "striae acusticae intermedius" + "commissure of held", + "intermediate acoustic stria (held)", + "intermediate acoustic stria of held" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld b/instances/latest/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld index 63b413c1a..7b553e6a3 100644 --- a/instances/latest/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intermediateHypothalamicRegion", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Intermediate hypothalamic region' is a regional part of brain. It is part of the hypothalamus.", - "description": "The portion of the hypothalamus located generally internal to the region of the infundibulum.", + "definition": "Is a regional part of brain. Is part of the hypothalamus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002555) ('is_a' and 'relationship')]", + "description": "The portion of the hypothalamus located generally internal to the region of the infundibulum. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002555)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105570", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002555#intermediate-hypothalamic-region-1", "name": "intermediate hypothalamic region", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002555", "synonym": [ "area hypothalamica intermedia", - "IHR", - "intermediate hypothalamic area", - "intermediate hypothalamus", - "medial hypothalamus", - "middle hypothalamus", - "regio hypothalamica intermedia" + "intermediate hypothalamic area" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/intermediatePartOfHypophysis.jsonld b/instances/latest/terminologies/UBERONParcellation/intermediatePartOfHypophysis.jsonld index 525e4b3f7..dc104fb49 100644 --- a/instances/latest/terminologies/UBERONParcellation/intermediatePartOfHypophysis.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/intermediatePartOfHypophysis.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intermediatePartOfHypophysis", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Intermediate part of hypophysis' is a regional part of brain. It is part of the adenohypophysis.", - "description": "", + "definition": "Is a regional part of brain. Is part of the adenohypophysis. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0023752) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105575", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023752#intermediate-part-of-hypophysis-1", "name": "intermediate part of hypophysis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023752", "synonym": [ - "IHP", - "intermediate lobe", - "intermediate lobe of hypophysis", "intermediate part of hypophysis", - "intermediate region of hypophysis", - "middle lobe of hypophysis", - "pituitary gland" + "intermediate part of hypophysis" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/intermediateReticularFormation.jsonld b/instances/latest/terminologies/UBERONParcellation/intermediateReticularFormation.jsonld new file mode 100644 index 000000000..1a2fd9d76 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/intermediateReticularFormation.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intermediateReticularFormation", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nuclear complex of neuraxis and gray matter of hindbrain. Is part of the medullary reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009776) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009776#intermediate-reticular-formation", + "name": "intermediate reticular formation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009776", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/internalArcuateFiberBundle.jsonld b/instances/latest/terminologies/UBERONParcellation/internalArcuateFiberBundle.jsonld index 6ac7ac441..53efa4e43 100644 --- a/instances/latest/terminologies/UBERONParcellation/internalArcuateFiberBundle.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/internalArcuateFiberBundle.jsonld @@ -4,21 +4,19 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/internalArcuateFiberBundle", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Internal arcuate fiber bundle' is a neuron projection bundle and central nervous system cell part cluster. It is part of the white matter of medulla oblongata.", - "description": "Internal arcuate fibers are the axons of second-order neurons contained within the gracile and cuneate nuclei of the medulla oblongata. These fibers cross from one side of the medulla to the other to form the medial lemniscus. Part of the dorsal column-medial lemniscus system (second neuron), the internal arcuate fibers are important for relaying the sensation of fine touch and proprioception to the thalamus and ultimately to the cerebral cortex.", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the white matter of medulla oblongata. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006087) ('is_a' and 'relationship')]", + "description": "Internal arcuate fibers are the axons of second-order neurons contained within the gracile and cuneate nuclei of the medulla oblongata. These fibers cross from one side of the medulla to the other to form the medial lemniscus. Part of the dorsal column-medial lemniscus system (second neuron), the internal arcuate fibers are important for relaying the sensation of fine touch and proprioception to the thalamus and ultimately to the cerebral cortex. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006087)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105582", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006087#internal-arcuate-fiber-bundle-1", "name": "internal arcuate fiber bundle", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006087", "synonym": [ - "arcuate fibers (medial lemniscus)", "arcuate fibers medial lemniscus", "fibrae arcuatae internae", - "fibre arciformes olivares", - "fibre arciformes sensibiles", - "ia", + "internal arcuate fibers", "internal arcuate fibers", "internal arcuate fibres", "internal arcuate tract" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld b/instances/latest/terminologies/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld index 94f0fea33..29d6b9364 100644 --- a/instances/latest/terminologies/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld @@ -4,22 +4,20 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/internalMedullaryLaminaOfThalamus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Internal medullary lamina of thalamus' is a medullary lamina of thalamus.", - "description": "Predominantly white regional part of thalamus consisting of a Y shaped bundle of fibers that runs the anterior-posterior length of thalamus and divides the thalamus into roughly three regions (MM: 2006-10-26)", + "definition": "Is a medullary lamina of thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002762)]", + "description": "Predominantly white regional part of thalamus consisting of a Y shaped bundle of fibers that runs the anterior-posterior length of thalamus and divides the thalamus into roughly three regions (MM: 2006-10-26) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002762)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105586", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002762#internal-medullary-lamina-of-thalamus-1", "name": "internal medullary lamina of thalamus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002762", "synonym": [ "envelope (involucrum medial) (Hassler)", - "iml", "internal medullary lamina", "internal medullary lamina of thalamus", - "internal medullary lamina of the thalamus", "lamina medullaris interna", "lamina medullaris interna thalami", - "lamina medullaris medialis", "lamina medullaris medialis thalami", "lamina medullaris thalami interna" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/interstitialPartOfHyperpalliumApicale.jsonld b/instances/latest/terminologies/UBERONParcellation/interstitialPartOfHyperpalliumApicale.jsonld new file mode 100644 index 000000000..54dd955f3 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/interstitialPartOfHyperpalliumApicale.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/interstitialPartOfHyperpalliumApicale", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the hyperpallium apicale. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014758) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014758#interstitial-part-of-hyperpallium-apicale", + "name": "interstitial part of hyperpallium apicale", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014758", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/interthalamicAdhesion.jsonld b/instances/latest/terminologies/UBERONParcellation/interthalamicAdhesion.jsonld index ade4b337c..2c1b72f44 100644 --- a/instances/latest/terminologies/UBERONParcellation/interthalamicAdhesion.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/interthalamicAdhesion.jsonld @@ -4,15 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/interthalamicAdhesion", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Interthalamic adhesion' is a nervous system commissure.", - "description": "Median gray matter mass that connects the two thalami; present in a large percentage of humans (Heimer, L. The Human Brain and Spinal Cord, 2nd ed., 1995, pg 76n).", + "definition": "Is a nervous system commissure. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006681)]", + "description": "The medial surface of the thalamus constitutes the upper part of the lateral wall of the third ventricle, and is connected to the corresponding surface of the opposite thalamus by a flattened gray band, the Interthalamic adhesion (massa intermedia, middle commissure, gray commissure). In non-human mammals it is a large structure. In humans this mass averages about 1 cm in length in its antero-posterior diameter. It sometimes consists of two parts and occasionally is absent. The interthalamic adhesion is found in 70-80% of humans. It is present more often in females and larger than in males by an average of 53 percent.. When absent in development, no noticeable deficit has been observed. It contains nerve cells and nerve fibers; a few of the latter may cross the middle line, but most of them pass toward the middle line and then curve lateralward on the same side. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006681)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105629", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006681#interthalamic-adhesion", "name": "interthalamic adhesion", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006681", "synonym": [ "interthalamic connection", - "massa intermedia", "middle commissure" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/interveningZone.jsonld b/instances/latest/terminologies/UBERONParcellation/interveningZone.jsonld new file mode 100644 index 000000000..eafab6c2a --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/interveningZone.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/interveningZone", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the midbrain-hindbrain boundary. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2001341) ('is_a' and 'relationship')]", + "description": "A zone of delayed differentiation at the midbrainhindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. Geling et al, 2003. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2001341)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2001341#intervening-zone", + "name": "intervening zone", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2001341", + "synonym": [ + "IZ" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/interventricularForamenOfCNS.jsonld b/instances/latest/terminologies/UBERONParcellation/interventricularForamenOfCNS.jsonld new file mode 100644 index 000000000..5b7320636 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/interventricularForamenOfCNS.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/interventricularForamenOfCNS", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the ventricular system of central nervous system. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003993)]", + "description": "The paired channels that connect the lateral and third ventricles and allows cerebrospinal fluid produced in the lateral ventricles to flow into the third ventricles. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003993)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003993#interventricular-foramen-of-cns", + "name": "interventricular foramen of CNS", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003993", + "synonym": [ + "foramen interventriculare", + "foramen Monroi", + "interventricular foramen", + "interventricular foramina" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/intralaminarNuclearGroup.jsonld b/instances/latest/terminologies/UBERONParcellation/intralaminarNuclearGroup.jsonld index 775ccca1f..491da7266 100644 --- a/instances/latest/terminologies/UBERONParcellation/intralaminarNuclearGroup.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/intralaminarNuclearGroup.jsonld @@ -4,24 +4,21 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intralaminarNuclearGroup", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Intralaminar nuclear group' is a nucleus of dorsal thalamus.", - "description": "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted].", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002733)]", + "description": "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002733)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105651", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002733#intralaminar-nuclear-group-1", "name": "intralaminar nuclear group", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002733", "synonym": [ - "ILG", - "intralaminar group of the dorsal thalamus", "intralaminar nuclear complex", "intralaminar nuclear group", "intralaminar nuclear group of thalamus", "intralaminar nuclei of thalamus", - "intralaminar nuclei of the dorsal thalamus", - "intralaminar thalamic nuclear group", "intralaminar thalamic nuclei", "nonspecific thalamic system", "nuclei intralaminares (thalami)", "nuclei intralaminares thalami" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/intrinsicNeuronalCircuit.jsonld b/instances/latest/terminologies/UBERONParcellation/intrinsicNeuronalCircuit.jsonld new file mode 100644 index 000000000..f484afc74 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/intrinsicNeuronalCircuit.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intrinsicNeuronalCircuit", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a circuit part of central nervous system. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0026547)]", + "description": "A neuronal circuit where all the participating neurons are bounded within a defined and limited region of the nervous system.(BB). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0026547)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0026547#intrinsic-neuronal-circuit-1", + "name": "intrinsic neuronal circuit", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0026547", + "synonym": [ + "intrinsic neuronal circuit", + "intrinsic neuronal circuit" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/islaMagnaOfCalleja.jsonld b/instances/latest/terminologies/UBERONParcellation/islaMagnaOfCalleja.jsonld index 2ed2cacaf..e0c34c3c7 100644 --- a/instances/latest/terminologies/UBERONParcellation/islaMagnaOfCalleja.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/islaMagnaOfCalleja.jsonld @@ -4,17 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/islaMagnaOfCalleja", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Isla magna of Calleja' is a regional part of brain. It is part of the island of Calleja.", - "description": "A profile (typically representing a sequence alignment) derived from a matrix of nucleotide (or amino acid) counts per position that reflects information content at each position.", + "definition": "Is a regional part of brain. Is part of the island of Calleja. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0023868) ('is_a' and 'relationship')]", + "description": "Regional part of telencephalon; the most prominent of the islands of Calleja located medially in the nucleus accumbens (adapted from Braininfo.org). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0023868)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105729", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023868#isla-magna-of-calleja-1", "name": "isla magna of Calleja", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023868", "synonym": [ - "ICm", - "insula magna", "isla magna of calleja", - "Large island of Calleja", "major island of Calleja" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/islandOfCalleja.jsonld b/instances/latest/terminologies/UBERONParcellation/islandOfCalleja.jsonld index 0124252fc..1801c589d 100644 --- a/instances/latest/terminologies/UBERONParcellation/islandOfCalleja.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/islandOfCalleja.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/islandOfCalleja", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Island of Calleja' is a telencephalic nucleus. It is part of the cerebral hemisphere.", - "description": "Small clusters of granule cells located in the olfactory tubercle and also within the Island of Calleja magna that lies between the septum and the nucleus accumbens", + "definition": "Is a telencephalic nucleus. Is part of the cerebral hemisphere. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001881) ('is_a' and 'relationship')]", + "description": "One of the seven small groups of granule cells in the polymorph layer of the olfactory tubercle and one large group, the insula magna, which lies along the border between septum, nucleus accumbens and nucleus of the diagonal band. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001881)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105730", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001881#islands-of-calleja", "name": "island of Calleja", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001881", "synonym": [ "Calleja island", - "ICj", - "insula callejae", - "insulae olfactoriae", - "Islands of Calleja", - "islands of Calleja (olfactory tubercle)", - "Islets of Calleja" + "islands of Calleja" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/jugalRamule.jsonld b/instances/latest/terminologies/UBERONParcellation/jugalRamule.jsonld new file mode 100644 index 000000000..a528db936 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/jugalRamule.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/jugalRamule", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a ramus mandibularis externus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_3010778)]", + "description": "This ramule innervates the jugal line of neuromasts and is the dorsal branch of the ramus mandibularis externus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_3010778)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:3010778#jugal-ramule", + "name": "jugal ramule", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_3010778", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/juxtarestiformBody.jsonld b/instances/latest/terminologies/UBERONParcellation/juxtarestiformBody.jsonld index 254c4b385..86c7b41d4 100644 --- a/instances/latest/terminologies/UBERONParcellation/juxtarestiformBody.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/juxtarestiformBody.jsonld @@ -4,13 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/juxtarestiformBody", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Juxtarestiform body' is a white matter of medulla oblongata. It is part of the inferior cerebellar peduncle.", - "description": "Fibers interconnecting the cerebellum and vestibular nuclei, traveling medial to the restiform body (inferior cerebellar peduncle) (Nolte, The Human Brain, 6th ed., pg 497)", + "definition": "Is a white matter of medulla oblongata. Is part of the inferior cerebellar peduncle. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002592) ('is_a' and 'relationship')]", + "description": "Fibers interconnecting the cerebellum and vestibular nuclei, traveling medial to the restiform body (inferior cerebellar peduncle) (Nolte, The Human Brain, 6th ed., pg 497) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002592)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105804", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002592#juxtarestiform-body-1", "name": "juxtarestiform body", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002592", - "synonym": [ - "corpus juxtarestiforme" - ] + "synonym": null } + diff --git a/instances/latest/terminologies/UBERONParcellation/laminaOfSeptumPellucidum.jsonld b/instances/latest/terminologies/UBERONParcellation/laminaOfSeptumPellucidum.jsonld index 62caaccf4..10b217d9e 100644 --- a/instances/latest/terminologies/UBERONParcellation/laminaOfSeptumPellucidum.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/laminaOfSeptumPellucidum.jsonld @@ -4,16 +4,14 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/laminaOfSeptumPellucidum", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lamina of septum pellucidum' is a central nervous system cell part cluster and nervous system cell part layer. It is part of the septum pellucidum.", - "description": "One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy.", + "definition": "Is a central nervous system cell part cluster and nervous system cell part layer. Is part of the septum pellucidum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002742) ('is_a' and 'relationship')]", + "description": "One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002742)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105979", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002742#lamina-of-septum-pellucidum-1", "name": "lamina of septum pellucidum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002742", "synonym": [ - "lamina of the septum pellucidum", - "lamina septi pellucidi", - "laminae septi pellucidi", "septum pellucidum lamina" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/laminaTerminalisOfCerebralHemisphere.jsonld b/instances/latest/terminologies/UBERONParcellation/laminaTerminalisOfCerebralHemisphere.jsonld new file mode 100644 index 000000000..d2da83459 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/laminaTerminalisOfCerebralHemisphere.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/laminaTerminalisOfCerebralHemisphere", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter lamina of cerebral hemisphere. Is part of the cerebral hemisphere white matter. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015117) ('is_a' and 'relationship')]", + "description": "The remnant of the lamina terminalis in the developed brain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015117)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015117#lamina-terminalis-of-cerebral-hemisphere", + "name": "lamina terminalis of cerebral hemisphere", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015117", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/lapillus.jsonld b/instances/latest/terminologies/UBERONParcellation/lapillus.jsonld new file mode 100644 index 000000000..263639a78 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/lapillus.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lapillus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an otolith. Is part of the utricle of membranous labyrinth. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000530) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000530#lapillus", + "name": "lapillus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000530", + "synonym": [ + "utricular otolith", + "utriculith" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/laryngeusVentralis.jsonld b/instances/latest/terminologies/UBERONParcellation/laryngeusVentralis.jsonld new file mode 100644 index 000000000..4b916172a --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/laryngeusVentralis.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/laryngeusVentralis", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nerve of head region. Is part of the ramus recurrens. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_3010764) ('is_a' and 'relationship')]", + "description": "A branch of the vagus nerve innervating heart, stomach, and lung muscle. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_3010764)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:3010764#laryngeus-ventralis", + "name": "laryngeus ventralis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_3010764", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralCerebellomedullaryCistern.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralCerebellomedullaryCistern.jsonld new file mode 100644 index 000000000..33d60331a --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/lateralCerebellomedullaryCistern.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralCerebellomedullaryCistern", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a cerebellomedullary cistern. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004051)]", + "description": "The space between the cerebellum and the lateral aspect of the medulla. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004051)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004051#lateral-cerebellomedullary-cistern", + "name": "lateral cerebellomedullary cistern", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004051", + "synonym": [ + "cisterna cerebellomedullaris lateralis" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralDivision.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralDivision.jsonld new file mode 100644 index 000000000..8b6bd2b65 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/lateralDivision.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralDivision", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the valvula cerebelli. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000532) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000532#lateral-division", + "name": "lateral division", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000532", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralEminenceOfHypophysis.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralEminenceOfHypophysis.jsonld index b1992c9eb..16d1bc19d 100644 --- a/instances/latest/terminologies/UBERONParcellation/lateralEminenceOfHypophysis.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/lateralEminenceOfHypophysis.jsonld @@ -4,11 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralEminenceOfHypophysis", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral eminence of hypophysis' is part of the pituitary gland.", + "definition": "Is part of the pituitary gland. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0027109)]", "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106054", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027109#lateral-eminence-of-hypophysis-1", "name": "lateral eminence of hypophysis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027109", - "synonym": null + "synonym": [ + "lateral eminence of hypophysis", + "lateral eminence of hypophysis" + ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralForebrainBundle.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralForebrainBundle.jsonld new file mode 100644 index 000000000..86667995d --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/lateralForebrainBundle.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralForebrainBundle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2007012)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2007012#lateral-forebrain-bundle", + "name": "lateral forebrain bundle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2007012", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralGeniculateBody.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralGeniculateBody.jsonld index 61672944d..c8b4582c3 100644 --- a/instances/latest/terminologies/UBERONParcellation/lateralGeniculateBody.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/lateralGeniculateBody.jsonld @@ -4,24 +4,17 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralGeniculateBody", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral geniculate body' is a nucleus of dorsal thalamus. It is part of the metathalamus.", - "description": "The group of neurons that serve as the primary processor of visual information received from the retina via the optic tract and send processed information to the visual cortex of the occipital lobe", + "definition": "Is a nucleus of dorsal thalamus. Is part of the metathalamus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001926) ('is_a' and 'relationship')]", + "description": "The group of neurons that serve as the primary processor of visual information received from the retina via the optic tract and send processed information to the visual cortex of the occipital lobe. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001926)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106064", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001926#lateral-geniculate-body-1", "name": "lateral geniculate body", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001926", "synonym": [ - "corpus geniculatum externum", - "corpus geniculatum laterale", "corpus geniculatum laterales", - "corpus geniculatus lateralis", - "external geniculate body", - "lateral geniculate body", "lateral geniculate complex", "lateral geniculate nucleus", - "LGB", - "LGN", - "nucleus corporis geniculati lateralis", "nucleus geniculatus lateralis" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralGlobusPallidus.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralGlobusPallidus.jsonld index 343ee7a5c..5ac2fa373 100644 --- a/instances/latest/terminologies/UBERONParcellation/lateralGlobusPallidus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/lateralGlobusPallidus.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralGlobusPallidus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral globus pallidus' is a cerebral hemisphere gray matter. It is part of the globus pallidus.", - "description": "The more lateral of the two segments of the globus pallidus, abutting the putamen in species which have both a caudate and putamen; the caudoputamen in other species.", + "definition": "Is a cerebral hemisphere gray matter. Is part of the globus pallidus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002476) ('is_a' and 'relationship')]", + "description": "The more lateral of the two segments of the globus pallidus, abutting the putamen. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002476)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104658", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002476#globus-pallidus-external-segment", "name": "lateral globus pallidus", @@ -14,30 +14,17 @@ "external globus pallidus", "external pallidum", "external part of globus pallidus", - "external segment", - "globus pallidus", - "globus pallidus (rat)", "globus pallidus extermal segment", "globus pallidus external segment", "globus pallidus externus", - "globus pallidus lateral part", - "globus pallidus lateral segment", "globus pallidus lateralis", - "Gpe", - "lateral division of globus pallidus", - "lateral globus pallidus", + "globus pallidus, lateral segment", "lateral pallidal segment", "lateral pallidum", - "lateral part", "lateral part of globus pallidus", - "lateral segment", "lateral segment of globus pallidus", - "lateral segment of the globus pallidus", - "nucleus lateralis globi pallidi", - "pallidum dorsal region external segment", - "pallidum I", "pallidus II", - "pars externa", "pars lateralis globi pallidi medialis" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralGranularEminence.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralGranularEminence.jsonld new file mode 100644 index 000000000..895258cfa --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/lateralGranularEminence.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralGranularEminence", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the vestibulolateralis lobe. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000187) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000187#lateral-granular-eminence", + "name": "lateral granular eminence", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000187", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralLemniscus.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralLemniscus.jsonld index f72be27ea..80eea5622 100644 --- a/instances/latest/terminologies/UBERONParcellation/lateralLemniscus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/lateralLemniscus.jsonld @@ -4,17 +4,14 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralLemniscus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral lemniscus' is a nervous system lemniscus.", - "description": "A fiber bundle that runs through the medulla, pons and midbrain that arises in the cochlear nucleus and projects to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. The brainstem nuclei include the superior olive, the medial nucleus of the trapezoid body, and the dorsal nucleus of the lateral lemniscus. Fibers leaving these brainstem nuclei ascending to the inferior colliculus rejoin the lateral lemniscus. In that sense, this is not a 'lemniscus' in the true sense of the word (second order, decussated sensory axons), as there is third (and out of the lateral superior olive, fourth) order information coming out of some of these brainstem nuclei. Adapted from Wikipedia.org (MM).", + "definition": "Is a nervous system lemniscus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002953)]", + "description": "A fiber bundle that runs through the medulla, pons and midbrain that arises in the cochlear nucleus and projects to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. The brainstem nuclei include the superior olive, the medial nucleus of the trapezoid body, and the dorsal nucleus of the lateral lemniscus. Fibers leaving these brainstem nuclei ascending to the inferior colliculus rejoin the lateral lemniscus. In that sense, this is not a 'lemniscus' in the true sense of the word (second order, decussated sensory axons), as there is third (and out of the lateral superior olive, fourth) order information coming out of some of these brainstem nuclei. Adapted from Wikipedia.org (MM). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002953)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106074", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002953#lateral-lemniscus-1", "name": "lateral lemniscus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002953", "synonym": [ - "central acoustic tract", - "lateral fillet", - "lateral lemniscus (Reil)", - "lemniscus acusticus", - "lemniscus lateralis" + "lateral fillet" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralLongitudinalStria.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralLongitudinalStria.jsonld new file mode 100644 index 000000000..f03c30800 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/lateralLongitudinalStria.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralLongitudinalStria", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter of limbic lobe and stria of telencephalon. Is part of the supracallosal gyrus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0019283) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019283#lateral-longitudinal-stria", + "name": "lateral longitudinal stria", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019283", + "synonym": [ + "lateral white stria of lancisi" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld index 9fa0411e0..03431fb6f 100644 --- a/instances/latest/terminologies/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral medullary lamina of globus pallidus' is a white matter lamina of cerebral hemisphere. It is part of the globus pallidus.", - "description": "Thin band of myelinated fibers lying on the lateral (external) surface of the globus pallidus, external segment, separating it from the putamen. (Carpenter, A core text of neuroanatomy, 3rd ed., 1985, pg 303).", + "definition": "Is a white matter lamina of cerebral hemisphere. Is part of the globus pallidus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002765) ('is_a' and 'relationship')]", + "description": "The lateral medullary lamina is a thin white structure located in the basal ganglia of the primate brain. Bounded laterally by the putamen and medially by the globus pallidus, it is defined on the basis of Nissl or myelin stain ( Carpenter-1983 ). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002765)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106077", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002765#lateral-medullary-lamina", "name": "lateral medullary lamina of globus pallidus", @@ -16,25 +16,18 @@ "external medullary lamina of corpus striatum", "external medullary lamina of globus pallidus", "external medullary lamina of lentiform nucleus", - "globus pallidus", - "lamella pallidi externa", - "lamina medullaris externa", "lamina medullaris externa corporis striati", - "lamina medullaris externa pallidi", - "lamina medullaris lateralis", "lamina medullaris lateralis corporis striati", - "lamina pallidi externa", "lateral medulary lamina of globus pallidus", "lateral medulary stria", "lateral medullary lamina", "lateral medullary lamina of corpus striatum", "lateral medullary lamina of globus pallidus", "lateral medullary lamina of pallidum", - "lateral medullary lamina of the globus pallidus", "lateral medullary stria", - "lml", "medulary lamina of pallidum", "outer medulary lamina", "outer medullary lamina" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralMedullaryReticularComplex.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralMedullaryReticularComplex.jsonld new file mode 100644 index 000000000..706af8446 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/lateralMedullaryReticularComplex.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralMedullaryReticularComplex", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nuclear complex of neuraxis and gray matter of hindbrain. Is part of the medullary reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009775) ('is_a' and 'relationship')]", + "description": "A nuclear complex of the medullary reticular formation that can be divided into three subnuclei: the parvocellular, magnocellular and the subtrigeminal. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009775)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009775#lateral-medullary-reticular-complex", + "name": "lateral medullary reticular complex", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009775", + "synonym": [ + "lateral group of medullary reticular formation", + "lateral medullary reticular group", + "lateral reticular formation of the medulla oblongata", + "nuclei laterales myelencephali" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld index f8a5aa617..b786355a1 100644 --- a/instances/latest/terminologies/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralNuclearGroupOfThalamus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral nuclear group of thalamus' is a nucleus of dorsal thalamus.", - "description": "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted].", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002736)]", + "description": "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002736)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106078", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002736#lateral-nuclear-group", "name": "lateral nuclear group of thalamus", @@ -18,12 +18,10 @@ "lateral nuclear group of thalamus", "lateral nucleus of thalamus", "lateral thalamic group", - "lateral thalamic nuclear group", - "lateral thalamic nuclear region", "lateral thalamic nuclei", "lateral thalamic nucleus", - "LNG", "nuclei laterales thalami", "nucleus lateralis thalami" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralOcellus.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralOcellus.jsonld new file mode 100644 index 000000000..c346b5b5c --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/lateralOcellus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralOcellus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a dorsal ocellus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003162)]", + "description": "The ocellus that is paired. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003162)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003162#lateral-ocellus", + "name": "lateral ocellus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003162", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralPallium.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralPallium.jsonld new file mode 100644 index 000000000..f96abcf50 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/lateralPallium.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralPallium", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the pallium. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014741) ('is_a' and 'relationship')]", + "description": "Subdivision of pallium that is located laterally. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014741)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014741#lateral-pallium", + "name": "lateral pallium", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014741", + "synonym": [ + "area dorsalis telencephali, zona lateralis", + "lateral zone of D", + "lateral zone of dorsal telencephalic area" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralPesLemniscus.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralPesLemniscus.jsonld index b93cb9f77..676c35ef7 100644 --- a/instances/latest/terminologies/UBERONParcellation/lateralPesLemniscus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/lateralPesLemniscus.jsonld @@ -4,22 +4,19 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralPesLemniscus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral pes lemniscus' is a nervous system lemniscus. It is part of the midbrain tegmentum.", - "description": "", + "definition": "Is a nervous system lemniscus. Is part of the midbrain tegmentum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003010) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106094", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003010#lateral-pes-lemniscus-1", "name": "lateral pes lemniscus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003010", "synonym": [ "deep pes lemniscus", - "fasciculi laterales pontis", "fussschleife", "lateral pontine bundle", - "Laterale Haubenfussschleife", - "Laterale pontine Buendel", - "lpl", - "pes lemnisci profundus", - "pes lemniscus lateralis", + "laterale haubenfussschleife", + "laterale pontine buendel", "pes lemniscus profond" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralRecessOfThirdVetricle.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralRecessOfThirdVetricle.jsonld new file mode 100644 index 000000000..95577952b --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/lateralRecessOfThirdVetricle.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralRecessOfThirdVetricle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the third ventricle. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008902) ('is_a' and 'relationship')]", + "description": "Lateral protrusion of the third ventricle. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008902)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008902#lateral-recess-of-third-vetricle", + "name": "lateral recess of third vetricle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008902", + "synonym": [ + "lateral recess of diencephalic ventricle" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralSeptalComplex.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralSeptalComplex.jsonld index dca9341ca..bb3fd319a 100644 --- a/instances/latest/terminologies/UBERONParcellation/lateralSeptalComplex.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/lateralSeptalComplex.jsonld @@ -4,11 +4,14 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralSeptalComplex", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral septal complex' is a septal nuclear complex. It is part of the striatum.", - "description": "The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour.", + "definition": "Is a septal nuclear complex. Is part of the striatum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007628) ('is_a' and 'relationship')]", + "description": "The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007628)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728564", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007628#lateral-septal-complex", "name": "lateral septal complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007628", - "synonym": null + "synonym": [ + "lateral septal area" + ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/lateralZoneOfHypothalamus.jsonld b/instances/latest/terminologies/UBERONParcellation/lateralZoneOfHypothalamus.jsonld new file mode 100644 index 000000000..b63a64f9f --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/lateralZoneOfHypothalamus.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralZoneOfHypothalamus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the hypothalamus. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002273)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002273#lateral-zone-of-hypothalamus", + "name": "lateral zone of hypothalamus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002273", + "synonym": [ + "hypothalamus lateral zone", + "zona lateralis hypothalamicae" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/hypothalamus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/hypothalamus.jsonld index ad9e67bcd..c7680f18f 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/hypothalamus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/hypothalamus.jsonld @@ -4,17 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hypothalamus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hypothalamus' is a regional part of brain. It is part of the limbic system and thalamic complex.", - "description": "Ventral part of the diencephalon extending from the region of the optic chiasm to the caudal border of the mammillary bodies and forming the inferior and lateral walls of the third ventricle.The ventral topographic division of the interbrain. The first adequate description of the hypothalamus as a layer of gray matter surrounding the lower half of the third ventricle (Galen, c173) was provided by Wharton (1656, see 1966 translation, p. 170). His (1893, pp. 159-162) introduced the term but assigned the preoptic region (Swanson, 1976, pp. 229-235) of the hypothalamus to the telencephalon (His, 1893b). The definition here was introduced for vertebrates by Kuhlenbeck (1927, p. 67, Ch. 9).", + "definition": "Is a regional part of brain. Is part of the limbic system and the thalamic complex. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001898) ('is_a' and 'relationship')]", + "description": "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001898)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105177", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001898#hypothalamus-1", "name": "hypothalamus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001898", "synonym": [ - "Hy", - "Hypencephalon", - "Preoptico-hypothalamic area", - "Preoptico-hypothalamic region", - "hypothalamus" + "preoptico-hypothalamic area", + "preoptico-hypothalamic region" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/induseumGriseum.jsonld b/instances/v3.0/terminologies/UBERONParcellation/induseumGriseum.jsonld index 8f08282ea..652134684 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/induseumGriseum.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/induseumGriseum.jsonld @@ -4,22 +4,14 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/induseumGriseum", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Induseum griseum' is a white matter of limbic lobe and stria of telencephalon. It is part of the hippocampal formation and supracallosal gyrus.", - "description": "Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed)", + "definition": "Is a white matter of limbic lobe and stria of telencephalon. Is part of the hippocampal formation and the supracallosal gyrus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015793) ('is_a' and 'relationship')]", + "description": "Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015793)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105421", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015793#induseum-griseum", "name": "induseum griseum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015793", "synonym": [ - "dorsal hippocampal continuation", - "gray stria of Lancisi", - "gyrus epicallosus", - "gyrus indusium griseum", - "IG", - "indusium griseum", - "superior part of intralimbic gyrus", - "superior segment of intralimbic gyrus", - "supracallosal gyrus", - "supracommissural hippocampus" + "indusium griseum" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/inferiorColliculus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/inferiorColliculus.jsonld index 4cbffa069..3323f46ae 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/inferiorColliculus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/inferiorColliculus.jsonld @@ -4,22 +4,16 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorColliculus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior colliculus' is a regional part of brain. It is part of the corpora quadrigemina.", - "description": "Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM).", + "definition": "Is a regional part of brain. Is part of the corpora quadrigemina. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001946) ('is_a' and 'relationship')]", + "description": "Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001946)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105436", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001946#inferior-colliculus-1", "name": "inferior colliculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001946", "synonym": [ "caudal colliculus", - "colliculus caudalis", - "colliculus inferior", - "corpus bigeminalis caudalis", - "corpus bigeminum posterioris", - "corpus quadrigeminum inferius", - "IC", - "inferior colliculi", "posterior colliculus", "posterior corpus quadrigeminum" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld index cb8fcbc76..774a680eb 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld @@ -4,15 +4,12 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorLongitudinalFasciculus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "", - "description": "The 'inferior longitudinal fasciculus' is a white matter fibre bundle. It is a cerebral nerve fasciculus, connecting the temporal and occipital lobe.", + "definition": "Is a cerebral nerve fasciculus. Is part of the white matter of telencephalon and the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034743) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0724061", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034743#inferior-longitudinal-fasciculus", "name": "inferior longitudinal fasciculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034743", - "synonym": [ - "external sagittal stratum", - "fasciculus longitudinalis inferior", - "ilf" - ] + "synonym": null } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld index 1b18c458a..991520df2 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld @@ -4,15 +4,14 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorOccipitofrontalFasciculus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "", - "description": "The 'inferior occipitofrontal fasciculus' is a white matter fibre bundle. It is the inferior part of the occipitofrontal fasciculus.", + "definition": "Is an occipitofrontal fasciculus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034753)]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731728", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034753#inferior-occipitofrontal-fasciculus", "name": "inferior occipitofrontal fasciculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034753", "synonym": [ - "fasciculus occipito-frontalis inferior", - "fasciculus occipitofrontalis inferior", - "inferior fronto-occipital fasciculus" + "inferior occipitofrontal fasciculus" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld b/instances/v3.0/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld index 83ac42775..a6a1ad26e 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld @@ -4,26 +4,16 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorOlivaryComplex", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior olivary complex' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the olivary body.", - "description": "Largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements.", + "definition": "Is a nuclear complex of neuraxis and gray matter of hindbrain. Is part of the olivary body. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002127) ('is_a' and 'relationship')]", + "description": "Largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002127)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105448", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002127#inferior-olivary-complex-1", "name": "inferior olivary complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002127", "synonym": [ - "caudal olivary nuclei", - "complexus olivaris inferior", - "complexus olivaris inferior; nuclei olivares inferiores", - "inferior olivary complex (Vieussens)", "inferior olivary nuclear complex", - "inferior olivary nuclei", - "inferior olivary nucleus", "inferior olive", - "nuclei olivares caudales", - "nuclei olivares inferiores", - "nucleus olivaris caudalis", - "nucleus olivaris inferior", - "oliva", - "regio olivaris inferior" + "oliva" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld new file mode 100644 index 000000000..2d5114f42 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorPetrosalSinus", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a paired venous dural sinus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007160)]", + "description": "The inferior petrosal sinus, within the human head, is an area beneath the brain, which allows blood veins to span the area, from the center of the head downward. It drains from the cavernous sinus (beneath the brain) to the sigmoid sinuses above the internal jugular vein. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007160)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007160#inferior-petrosal-sinus", + "name": "inferior petrosal sinus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007160", + "synonym": [ + "sinus petrosal inferior" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld b/instances/v3.0/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld new file mode 100644 index 000000000..77a1f7bc5 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorReticularFormation", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a nucleus of medulla oblongata. Is part of the medial column. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000523) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000523#inferior-reticular-formation", + "name": "inferior reticular formation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000523", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld new file mode 100644 index 000000000..8de0139b8 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorSagittalSinus", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a sagittal sinus. Is part of the tentorial sinus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007152) ('is_a' and 'relationship')]", + "description": "An intracranial venous sinus that lies in a midline location along the lower free border of the falx cerebri of the brain. The sinus receives blood from the great cerebral vein and joins the superior sagittal sinus posteriorly. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007152)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007152#inferior-sagittal-sinus", + "name": "inferior sagittal sinus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007152", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld b/instances/v3.0/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld new file mode 100644 index 000000000..ed39b58bc --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld @@ -0,0 +1,23 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorThalamicPeduncle", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a peduncle of thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022242)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022242#inferior-thalamic-peduncle", + "name": "inferior thalamic peduncle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022242", + "synonym": [ + "inferior peduncle", + "pedunculus inferior thalami", + "pedunculus thalami caudalis", + "pedunculus thalami inferior", + "pedunculus thalamicus inferior", + "temporal peduncle", + "temporal thalamic peduncle" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/insula.jsonld b/instances/v3.0/terminologies/UBERONParcellation/insula.jsonld index 9119540fe..8295a8828 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/insula.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/insula.jsonld @@ -4,28 +4,21 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/insula", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Gray matter of the insular region of the neocortex. In gyrencephalic animals, it is part of the insular lobe and lies in the depths of the lateral fissure and covered by portions of the frontal, parietal and temporal lobes. It includes Brodmann areas 13-16.", - "description": "'Insula' is a cerebral hemisphere gray matter. It is part of the cerebral cortex.", + "definition": "Is a cerebral hemisphere gray matter. Is part of the cerebral cortex. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002022) ('is_a' and 'relationship')]", + "description": "Gray matter of the insular region of the neocortex. In gyrencephalic animals, it is part of the insular lobe and lies in the depths of the lateral fissure and covered by portions of the frontal, parietal and temporal lobes. It includes Brodmann areas 13-16. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002022)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105519", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002022#insula-1", "name": "insula", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002022", "synonym": [ "central lobe", - "cortex insularis", "cortex of island", - "iNS", - "insula cerebri", "insula lobule", - "insula of Reil", - "insula Reilii", - "insular cortex", - "insular gyrus", + "insular lobe", "insular lobe", "insular region", - "insulary cortex", "island of Reil", - "lobus insularis", - "morphological insula" + "lobus insularis" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld b/instances/v3.0/terminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld index 9a163eb6f..2dc11230b 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld @@ -4,16 +4,12 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intergeniculate leaflet of the lateral geniculate complex' is a regional part of brain. It is part of the lateral geniculate body.", - "description": "", + "definition": "Is a regional part of brain. Is part of the lateral geniculate body. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035975) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105563", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035975#intergeniculate-leaflet-of-the-lateral-geniculate-complex", "name": "intergeniculate leaflet of the lateral geniculate complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035975", - "synonym": [ - "IGL", - "intergeniculate leaflet", - "intergeniculate leaflet of the lateral geniculate complex", - "lateral geniculate complex" - ] + "synonym": null } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld b/instances/v3.0/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld index dba96aca5..c4fa6a1c2 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld @@ -4,16 +4,16 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intermediateAcousticStria", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intermediate acoustic stria' is a stria of neuraxis and white matter of pontine tegmentum.", - "description": "White matter structure containing axons arising from cochlear nuclear complex (Brodal, Neurological Anatomy, 3rd ed, 1985, pg 609)", + "definition": "Is a stria of neuraxis and white matter of pontine tegmentum. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002952)]", + "description": "White matter structure containing axons arising from cochlear nuclear complex (Brodal, Neurological Anatomy, 3rd ed, 1985, pg 609) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002952)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105568", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002952#intermediate-acoustic-stria-1", "name": "intermediate acoustic stria", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002952", "synonym": [ - "commissure of Held", - "intermediate acoustic stria (Held)", - "Intermediate acoustic stria of Held", - "striae acusticae intermedius" + "commissure of held", + "intermediate acoustic stria (held)", + "intermediate acoustic stria of held" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld b/instances/v3.0/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld index 9d0a3de33..b723fa897 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intermediateHypothalamicRegion", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intermediate hypothalamic region' is a regional part of brain. It is part of the hypothalamus.", - "description": "The portion of the hypothalamus located generally internal to the region of the infundibulum.", + "definition": "Is a regional part of brain. Is part of the hypothalamus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002555) ('is_a' and 'relationship')]", + "description": "The portion of the hypothalamus located generally internal to the region of the infundibulum. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002555)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105570", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002555#intermediate-hypothalamic-region-1", "name": "intermediate hypothalamic region", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002555", "synonym": [ "area hypothalamica intermedia", - "IHR", - "intermediate hypothalamic area", - "intermediate hypothalamus", - "medial hypothalamus", - "middle hypothalamus", - "regio hypothalamica intermedia" + "intermediate hypothalamic area" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/intermediatePartOfHypophysis.jsonld b/instances/v3.0/terminologies/UBERONParcellation/intermediatePartOfHypophysis.jsonld index 291bec6ba..28339e19f 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/intermediatePartOfHypophysis.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/intermediatePartOfHypophysis.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intermediatePartOfHypophysis", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intermediate part of hypophysis' is a regional part of brain. It is part of the adenohypophysis.", - "description": "", + "definition": "Is a regional part of brain. Is part of the adenohypophysis. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0023752) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105575", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023752#intermediate-part-of-hypophysis-1", "name": "intermediate part of hypophysis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023752", "synonym": [ - "IHP", - "intermediate lobe", - "intermediate lobe of hypophysis", "intermediate part of hypophysis", - "intermediate region of hypophysis", - "middle lobe of hypophysis", - "pituitary gland" + "intermediate part of hypophysis" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/intermediateReticularFormation.jsonld b/instances/v3.0/terminologies/UBERONParcellation/intermediateReticularFormation.jsonld new file mode 100644 index 000000000..5d18e3117 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/intermediateReticularFormation.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intermediateReticularFormation", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a nuclear complex of neuraxis and gray matter of hindbrain. Is part of the medullary reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009776) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009776#intermediate-reticular-formation", + "name": "intermediate reticular formation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009776", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/internalArcuateFiberBundle.jsonld b/instances/v3.0/terminologies/UBERONParcellation/internalArcuateFiberBundle.jsonld index 56ba7ce98..f4258aabe 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/internalArcuateFiberBundle.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/internalArcuateFiberBundle.jsonld @@ -4,21 +4,19 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/internalArcuateFiberBundle", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Internal arcuate fiber bundle' is a neuron projection bundle and central nervous system cell part cluster. It is part of the white matter of medulla oblongata.", - "description": "Internal arcuate fibers are the axons of second-order neurons contained within the gracile and cuneate nuclei of the medulla oblongata. These fibers cross from one side of the medulla to the other to form the medial lemniscus. Part of the dorsal column-medial lemniscus system (second neuron), the internal arcuate fibers are important for relaying the sensation of fine touch and proprioception to the thalamus and ultimately to the cerebral cortex.", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the white matter of medulla oblongata. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006087) ('is_a' and 'relationship')]", + "description": "Internal arcuate fibers are the axons of second-order neurons contained within the gracile and cuneate nuclei of the medulla oblongata. These fibers cross from one side of the medulla to the other to form the medial lemniscus. Part of the dorsal column-medial lemniscus system (second neuron), the internal arcuate fibers are important for relaying the sensation of fine touch and proprioception to the thalamus and ultimately to the cerebral cortex. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006087)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105582", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006087#internal-arcuate-fiber-bundle-1", "name": "internal arcuate fiber bundle", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006087", "synonym": [ - "arcuate fibers (medial lemniscus)", "arcuate fibers medial lemniscus", "fibrae arcuatae internae", - "fibre arciformes olivares", - "fibre arciformes sensibiles", - "ia", + "internal arcuate fibers", "internal arcuate fibers", "internal arcuate fibres", "internal arcuate tract" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld index 46ecdcab5..f6d7c87cf 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld @@ -4,22 +4,20 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/internalMedullaryLaminaOfThalamus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Internal medullary lamina of thalamus' is a medullary lamina of thalamus.", - "description": "Predominantly white regional part of thalamus consisting of a Y shaped bundle of fibers that runs the anterior-posterior length of thalamus and divides the thalamus into roughly three regions (MM: 2006-10-26)", + "definition": "Is a medullary lamina of thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002762)]", + "description": "Predominantly white regional part of thalamus consisting of a Y shaped bundle of fibers that runs the anterior-posterior length of thalamus and divides the thalamus into roughly three regions (MM: 2006-10-26) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002762)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105586", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002762#internal-medullary-lamina-of-thalamus-1", "name": "internal medullary lamina of thalamus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002762", "synonym": [ "envelope (involucrum medial) (Hassler)", - "iml", "internal medullary lamina", "internal medullary lamina of thalamus", - "internal medullary lamina of the thalamus", "lamina medullaris interna", "lamina medullaris interna thalami", - "lamina medullaris medialis", "lamina medullaris medialis thalami", "lamina medullaris thalami interna" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/interstitialPartOfHyperpalliumApicale.jsonld b/instances/v3.0/terminologies/UBERONParcellation/interstitialPartOfHyperpalliumApicale.jsonld new file mode 100644 index 000000000..7591b010a --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/interstitialPartOfHyperpalliumApicale.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/interstitialPartOfHyperpalliumApicale", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the hyperpallium apicale. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014758) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014758#interstitial-part-of-hyperpallium-apicale", + "name": "interstitial part of hyperpallium apicale", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014758", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/interthalamicAdhesion.jsonld b/instances/v3.0/terminologies/UBERONParcellation/interthalamicAdhesion.jsonld index e79eaa278..5a4a7d577 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/interthalamicAdhesion.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/interthalamicAdhesion.jsonld @@ -4,15 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/interthalamicAdhesion", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Interthalamic adhesion' is a nervous system commissure.", - "description": "Median gray matter mass that connects the two thalami; present in a large percentage of humans (Heimer, L. The Human Brain and Spinal Cord, 2nd ed., 1995, pg 76n).", + "definition": "Is a nervous system commissure. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006681)]", + "description": "The medial surface of the thalamus constitutes the upper part of the lateral wall of the third ventricle, and is connected to the corresponding surface of the opposite thalamus by a flattened gray band, the Interthalamic adhesion (massa intermedia, middle commissure, gray commissure). In non-human mammals it is a large structure. In humans this mass averages about 1 cm in length in its antero-posterior diameter. It sometimes consists of two parts and occasionally is absent. The interthalamic adhesion is found in 70-80% of humans. It is present more often in females and larger than in males by an average of 53 percent.. When absent in development, no noticeable deficit has been observed. It contains nerve cells and nerve fibers; a few of the latter may cross the middle line, but most of them pass toward the middle line and then curve lateralward on the same side. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006681)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105629", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006681#interthalamic-adhesion", "name": "interthalamic adhesion", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006681", "synonym": [ "interthalamic connection", - "massa intermedia", "middle commissure" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/interveningZone.jsonld b/instances/v3.0/terminologies/UBERONParcellation/interveningZone.jsonld new file mode 100644 index 000000000..ff0b50e1d --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/interveningZone.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/interveningZone", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the midbrain-hindbrain boundary. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2001341) ('is_a' and 'relationship')]", + "description": "A zone of delayed differentiation at the midbrainhindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. Geling et al, 2003. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2001341)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2001341#intervening-zone", + "name": "intervening zone", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2001341", + "synonym": [ + "IZ" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/interventricularForamenOfCNS.jsonld b/instances/v3.0/terminologies/UBERONParcellation/interventricularForamenOfCNS.jsonld new file mode 100644 index 000000000..e621bd10f --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/interventricularForamenOfCNS.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/interventricularForamenOfCNS", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is part of the ventricular system of central nervous system. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003993)]", + "description": "The paired channels that connect the lateral and third ventricles and allows cerebrospinal fluid produced in the lateral ventricles to flow into the third ventricles. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003993)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003993#interventricular-foramen-of-cns", + "name": "interventricular foramen of CNS", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003993", + "synonym": [ + "foramen interventriculare", + "foramen Monroi", + "interventricular foramen", + "interventricular foramina" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/intralaminarNuclearGroup.jsonld b/instances/v3.0/terminologies/UBERONParcellation/intralaminarNuclearGroup.jsonld index 3188baff4..57c9dea20 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/intralaminarNuclearGroup.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/intralaminarNuclearGroup.jsonld @@ -4,24 +4,21 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intralaminarNuclearGroup", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intralaminar nuclear group' is a nucleus of dorsal thalamus.", - "description": "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted].", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002733)]", + "description": "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002733)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105651", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002733#intralaminar-nuclear-group-1", "name": "intralaminar nuclear group", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002733", "synonym": [ - "ILG", - "intralaminar group of the dorsal thalamus", "intralaminar nuclear complex", "intralaminar nuclear group", "intralaminar nuclear group of thalamus", "intralaminar nuclei of thalamus", - "intralaminar nuclei of the dorsal thalamus", - "intralaminar thalamic nuclear group", "intralaminar thalamic nuclei", "nonspecific thalamic system", "nuclei intralaminares (thalami)", "nuclei intralaminares thalami" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/intrinsicNeuronalCircuit.jsonld b/instances/v3.0/terminologies/UBERONParcellation/intrinsicNeuronalCircuit.jsonld new file mode 100644 index 000000000..bf9b3d2f3 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/intrinsicNeuronalCircuit.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intrinsicNeuronalCircuit", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a circuit part of central nervous system. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0026547)]", + "description": "A neuronal circuit where all the participating neurons are bounded within a defined and limited region of the nervous system.(BB). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0026547)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0026547#intrinsic-neuronal-circuit-1", + "name": "intrinsic neuronal circuit", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0026547", + "synonym": [ + "intrinsic neuronal circuit", + "intrinsic neuronal circuit" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/islaMagnaOfCalleja.jsonld b/instances/v3.0/terminologies/UBERONParcellation/islaMagnaOfCalleja.jsonld index c561ceccb..ebf580a23 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/islaMagnaOfCalleja.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/islaMagnaOfCalleja.jsonld @@ -4,17 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/islaMagnaOfCalleja", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Isla magna of Calleja' is a regional part of brain. It is part of the island of Calleja.", - "description": "A profile (typically representing a sequence alignment) derived from a matrix of nucleotide (or amino acid) counts per position that reflects information content at each position.", + "definition": "Is a regional part of brain. Is part of the island of Calleja. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0023868) ('is_a' and 'relationship')]", + "description": "Regional part of telencephalon; the most prominent of the islands of Calleja located medially in the nucleus accumbens (adapted from Braininfo.org). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0023868)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105729", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023868#isla-magna-of-calleja-1", "name": "isla magna of Calleja", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023868", "synonym": [ - "ICm", - "insula magna", "isla magna of calleja", - "Large island of Calleja", "major island of Calleja" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/islandOfCalleja.jsonld b/instances/v3.0/terminologies/UBERONParcellation/islandOfCalleja.jsonld index c8b7ddadb..acd5a39ee 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/islandOfCalleja.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/islandOfCalleja.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/islandOfCalleja", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Island of Calleja' is a telencephalic nucleus. It is part of the cerebral hemisphere.", - "description": "Small clusters of granule cells located in the olfactory tubercle and also within the Island of Calleja magna that lies between the septum and the nucleus accumbens", + "definition": "Is a telencephalic nucleus. Is part of the cerebral hemisphere. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001881) ('is_a' and 'relationship')]", + "description": "One of the seven small groups of granule cells in the polymorph layer of the olfactory tubercle and one large group, the insula magna, which lies along the border between septum, nucleus accumbens and nucleus of the diagonal band. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001881)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105730", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001881#islands-of-calleja", "name": "island of Calleja", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001881", "synonym": [ "Calleja island", - "ICj", - "insula callejae", - "insulae olfactoriae", - "Islands of Calleja", - "islands of Calleja (olfactory tubercle)", - "Islets of Calleja" + "islands of Calleja" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/jugalRamule.jsonld b/instances/v3.0/terminologies/UBERONParcellation/jugalRamule.jsonld new file mode 100644 index 000000000..204f8af68 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/jugalRamule.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/jugalRamule", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a ramus mandibularis externus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_3010778)]", + "description": "This ramule innervates the jugal line of neuromasts and is the dorsal branch of the ramus mandibularis externus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_3010778)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:3010778#jugal-ramule", + "name": "jugal ramule", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_3010778", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/juxtarestiformBody.jsonld b/instances/v3.0/terminologies/UBERONParcellation/juxtarestiformBody.jsonld index a7a1e6488..e3c4d0ce2 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/juxtarestiformBody.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/juxtarestiformBody.jsonld @@ -4,13 +4,12 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/juxtarestiformBody", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Juxtarestiform body' is a white matter of medulla oblongata. It is part of the inferior cerebellar peduncle.", - "description": "Fibers interconnecting the cerebellum and vestibular nuclei, traveling medial to the restiform body (inferior cerebellar peduncle) (Nolte, The Human Brain, 6th ed., pg 497)", + "definition": "Is a white matter of medulla oblongata. Is part of the inferior cerebellar peduncle. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002592) ('is_a' and 'relationship')]", + "description": "Fibers interconnecting the cerebellum and vestibular nuclei, traveling medial to the restiform body (inferior cerebellar peduncle) (Nolte, The Human Brain, 6th ed., pg 497) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002592)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105804", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002592#juxtarestiform-body-1", "name": "juxtarestiform body", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002592", - "synonym": [ - "corpus juxtarestiforme" - ] + "synonym": null } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/laminaOfSeptumPellucidum.jsonld b/instances/v3.0/terminologies/UBERONParcellation/laminaOfSeptumPellucidum.jsonld index 135167940..667b65f32 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/laminaOfSeptumPellucidum.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/laminaOfSeptumPellucidum.jsonld @@ -4,16 +4,14 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/laminaOfSeptumPellucidum", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lamina of septum pellucidum' is a central nervous system cell part cluster and nervous system cell part layer. It is part of the septum pellucidum.", - "description": "One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy.", + "definition": "Is a central nervous system cell part cluster and nervous system cell part layer. Is part of the septum pellucidum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002742) ('is_a' and 'relationship')]", + "description": "One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002742)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105979", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002742#lamina-of-septum-pellucidum-1", "name": "lamina of septum pellucidum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002742", "synonym": [ - "lamina of the septum pellucidum", - "lamina septi pellucidi", - "laminae septi pellucidi", "septum pellucidum lamina" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/laminaTerminalisOfCerebralHemisphere.jsonld b/instances/v3.0/terminologies/UBERONParcellation/laminaTerminalisOfCerebralHemisphere.jsonld new file mode 100644 index 000000000..fe3a5e4e0 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/laminaTerminalisOfCerebralHemisphere.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/laminaTerminalisOfCerebralHemisphere", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a white matter lamina of cerebral hemisphere. Is part of the cerebral hemisphere white matter. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015117) ('is_a' and 'relationship')]", + "description": "The remnant of the lamina terminalis in the developed brain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015117)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015117#lamina-terminalis-of-cerebral-hemisphere", + "name": "lamina terminalis of cerebral hemisphere", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015117", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lapillus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lapillus.jsonld new file mode 100644 index 000000000..0f7b4e012 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/lapillus.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lapillus", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an otolith. Is part of the utricle of membranous labyrinth. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000530) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000530#lapillus", + "name": "lapillus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000530", + "synonym": [ + "utricular otolith", + "utriculith" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/laryngeusVentralis.jsonld b/instances/v3.0/terminologies/UBERONParcellation/laryngeusVentralis.jsonld new file mode 100644 index 000000000..e11928951 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/laryngeusVentralis.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/laryngeusVentralis", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a nerve of head region. Is part of the ramus recurrens. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_3010764) ('is_a' and 'relationship')]", + "description": "A branch of the vagus nerve innervating heart, stomach, and lung muscle. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_3010764)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:3010764#laryngeus-ventralis", + "name": "laryngeus ventralis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_3010764", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralCerebellomedullaryCistern.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralCerebellomedullaryCistern.jsonld new file mode 100644 index 000000000..3dbe3d6f8 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralCerebellomedullaryCistern.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralCerebellomedullaryCistern", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a cerebellomedullary cistern. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004051)]", + "description": "The space between the cerebellum and the lateral aspect of the medulla. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004051)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004051#lateral-cerebellomedullary-cistern", + "name": "lateral cerebellomedullary cistern", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004051", + "synonym": [ + "cisterna cerebellomedullaris lateralis" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralDivision.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralDivision.jsonld new file mode 100644 index 000000000..7b4abfb03 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralDivision.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralDivision", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the valvula cerebelli. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000532) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000532#lateral-division", + "name": "lateral division", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000532", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralEminenceOfHypophysis.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralEminenceOfHypophysis.jsonld index ca573e07d..dc8a1c9ed 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/lateralEminenceOfHypophysis.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralEminenceOfHypophysis.jsonld @@ -4,11 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralEminenceOfHypophysis", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral eminence of hypophysis' is part of the pituitary gland.", + "definition": "Is part of the pituitary gland. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0027109)]", "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106054", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027109#lateral-eminence-of-hypophysis-1", "name": "lateral eminence of hypophysis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027109", - "synonym": null + "synonym": [ + "lateral eminence of hypophysis", + "lateral eminence of hypophysis" + ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralForebrainBundle.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralForebrainBundle.jsonld new file mode 100644 index 000000000..5e708dbac --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralForebrainBundle.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralForebrainBundle", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a white matter. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2007012)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2007012#lateral-forebrain-bundle", + "name": "lateral forebrain bundle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2007012", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralGeniculateBody.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralGeniculateBody.jsonld index 782154b13..295e9da18 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/lateralGeniculateBody.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralGeniculateBody.jsonld @@ -4,24 +4,17 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralGeniculateBody", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral geniculate body' is a nucleus of dorsal thalamus. It is part of the metathalamus.", - "description": "The group of neurons that serve as the primary processor of visual information received from the retina via the optic tract and send processed information to the visual cortex of the occipital lobe", + "definition": "Is a nucleus of dorsal thalamus. Is part of the metathalamus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001926) ('is_a' and 'relationship')]", + "description": "The group of neurons that serve as the primary processor of visual information received from the retina via the optic tract and send processed information to the visual cortex of the occipital lobe. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001926)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106064", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001926#lateral-geniculate-body-1", "name": "lateral geniculate body", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001926", "synonym": [ - "corpus geniculatum externum", - "corpus geniculatum laterale", "corpus geniculatum laterales", - "corpus geniculatus lateralis", - "external geniculate body", - "lateral geniculate body", "lateral geniculate complex", "lateral geniculate nucleus", - "LGB", - "LGN", - "nucleus corporis geniculati lateralis", "nucleus geniculatus lateralis" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralGlobusPallidus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralGlobusPallidus.jsonld index e0a319298..3192539ca 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/lateralGlobusPallidus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralGlobusPallidus.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralGlobusPallidus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral globus pallidus' is a cerebral hemisphere gray matter. It is part of the globus pallidus.", - "description": "The more lateral of the two segments of the globus pallidus, abutting the putamen in species which have both a caudate and putamen; the caudoputamen in other species.", + "definition": "Is a cerebral hemisphere gray matter. Is part of the globus pallidus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002476) ('is_a' and 'relationship')]", + "description": "The more lateral of the two segments of the globus pallidus, abutting the putamen. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002476)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104658", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002476#globus-pallidus-external-segment", "name": "lateral globus pallidus", @@ -14,30 +14,17 @@ "external globus pallidus", "external pallidum", "external part of globus pallidus", - "external segment", - "globus pallidus", - "globus pallidus (rat)", "globus pallidus extermal segment", "globus pallidus external segment", "globus pallidus externus", - "globus pallidus lateral part", - "globus pallidus lateral segment", "globus pallidus lateralis", - "Gpe", - "lateral division of globus pallidus", - "lateral globus pallidus", + "globus pallidus, lateral segment", "lateral pallidal segment", "lateral pallidum", - "lateral part", "lateral part of globus pallidus", - "lateral segment", "lateral segment of globus pallidus", - "lateral segment of the globus pallidus", - "nucleus lateralis globi pallidi", - "pallidum dorsal region external segment", - "pallidum I", "pallidus II", - "pars externa", "pars lateralis globi pallidi medialis" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralGranularEminence.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralGranularEminence.jsonld new file mode 100644 index 000000000..2b0f4708e --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralGranularEminence.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralGranularEminence", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the vestibulolateralis lobe. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000187) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000187#lateral-granular-eminence", + "name": "lateral granular eminence", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000187", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralLemniscus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralLemniscus.jsonld index a5f6822cb..ad6e680f5 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/lateralLemniscus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralLemniscus.jsonld @@ -4,17 +4,14 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralLemniscus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral lemniscus' is a nervous system lemniscus.", - "description": "A fiber bundle that runs through the medulla, pons and midbrain that arises in the cochlear nucleus and projects to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. The brainstem nuclei include the superior olive, the medial nucleus of the trapezoid body, and the dorsal nucleus of the lateral lemniscus. Fibers leaving these brainstem nuclei ascending to the inferior colliculus rejoin the lateral lemniscus. In that sense, this is not a 'lemniscus' in the true sense of the word (second order, decussated sensory axons), as there is third (and out of the lateral superior olive, fourth) order information coming out of some of these brainstem nuclei. Adapted from Wikipedia.org (MM).", + "definition": "Is a nervous system lemniscus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002953)]", + "description": "A fiber bundle that runs through the medulla, pons and midbrain that arises in the cochlear nucleus and projects to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. The brainstem nuclei include the superior olive, the medial nucleus of the trapezoid body, and the dorsal nucleus of the lateral lemniscus. Fibers leaving these brainstem nuclei ascending to the inferior colliculus rejoin the lateral lemniscus. In that sense, this is not a 'lemniscus' in the true sense of the word (second order, decussated sensory axons), as there is third (and out of the lateral superior olive, fourth) order information coming out of some of these brainstem nuclei. Adapted from Wikipedia.org (MM). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002953)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106074", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002953#lateral-lemniscus-1", "name": "lateral lemniscus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002953", "synonym": [ - "central acoustic tract", - "lateral fillet", - "lateral lemniscus (Reil)", - "lemniscus acusticus", - "lemniscus lateralis" + "lateral fillet" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralLongitudinalStria.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralLongitudinalStria.jsonld new file mode 100644 index 000000000..272769446 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralLongitudinalStria.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralLongitudinalStria", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a white matter of limbic lobe and stria of telencephalon. Is part of the supracallosal gyrus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0019283) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019283#lateral-longitudinal-stria", + "name": "lateral longitudinal stria", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019283", + "synonym": [ + "lateral white stria of lancisi" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld index 04f762034..644dd7ec4 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral medullary lamina of globus pallidus' is a white matter lamina of cerebral hemisphere. It is part of the globus pallidus.", - "description": "Thin band of myelinated fibers lying on the lateral (external) surface of the globus pallidus, external segment, separating it from the putamen. (Carpenter, A core text of neuroanatomy, 3rd ed., 1985, pg 303).", + "definition": "Is a white matter lamina of cerebral hemisphere. Is part of the globus pallidus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002765) ('is_a' and 'relationship')]", + "description": "The lateral medullary lamina is a thin white structure located in the basal ganglia of the primate brain. Bounded laterally by the putamen and medially by the globus pallidus, it is defined on the basis of Nissl or myelin stain ( Carpenter-1983 ). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002765)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106077", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002765#lateral-medullary-lamina", "name": "lateral medullary lamina of globus pallidus", @@ -16,25 +16,18 @@ "external medullary lamina of corpus striatum", "external medullary lamina of globus pallidus", "external medullary lamina of lentiform nucleus", - "globus pallidus", - "lamella pallidi externa", - "lamina medullaris externa", "lamina medullaris externa corporis striati", - "lamina medullaris externa pallidi", - "lamina medullaris lateralis", "lamina medullaris lateralis corporis striati", - "lamina pallidi externa", "lateral medulary lamina of globus pallidus", "lateral medulary stria", "lateral medullary lamina", "lateral medullary lamina of corpus striatum", "lateral medullary lamina of globus pallidus", "lateral medullary lamina of pallidum", - "lateral medullary lamina of the globus pallidus", "lateral medullary stria", - "lml", "medulary lamina of pallidum", "outer medulary lamina", "outer medullary lamina" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralMedullaryReticularComplex.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralMedullaryReticularComplex.jsonld new file mode 100644 index 000000000..8633511d3 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralMedullaryReticularComplex.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralMedullaryReticularComplex", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a nuclear complex of neuraxis and gray matter of hindbrain. Is part of the medullary reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009775) ('is_a' and 'relationship')]", + "description": "A nuclear complex of the medullary reticular formation that can be divided into three subnuclei: the parvocellular, magnocellular and the subtrigeminal. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009775)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009775#lateral-medullary-reticular-complex", + "name": "lateral medullary reticular complex", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009775", + "synonym": [ + "lateral group of medullary reticular formation", + "lateral medullary reticular group", + "lateral reticular formation of the medulla oblongata", + "nuclei laterales myelencephali" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld index 80fde356f..d96f8497a 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralNuclearGroupOfThalamus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral nuclear group of thalamus' is a nucleus of dorsal thalamus.", - "description": "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted].", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002736)]", + "description": "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002736)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106078", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002736#lateral-nuclear-group", "name": "lateral nuclear group of thalamus", @@ -18,12 +18,10 @@ "lateral nuclear group of thalamus", "lateral nucleus of thalamus", "lateral thalamic group", - "lateral thalamic nuclear group", - "lateral thalamic nuclear region", "lateral thalamic nuclei", "lateral thalamic nucleus", - "LNG", "nuclei laterales thalami", "nucleus lateralis thalami" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralOcellus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralOcellus.jsonld new file mode 100644 index 000000000..53c708d72 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralOcellus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralOcellus", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a dorsal ocellus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003162)]", + "description": "The ocellus that is paired. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003162)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003162#lateral-ocellus", + "name": "lateral ocellus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003162", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralPallium.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralPallium.jsonld new file mode 100644 index 000000000..e398e79aa --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralPallium.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralPallium", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the pallium. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014741) ('is_a' and 'relationship')]", + "description": "Subdivision of pallium that is located laterally. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014741)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014741#lateral-pallium", + "name": "lateral pallium", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014741", + "synonym": [ + "area dorsalis telencephali, zona lateralis", + "lateral zone of D", + "lateral zone of dorsal telencephalic area" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralPesLemniscus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralPesLemniscus.jsonld index 5ef3a9550..d9622bff8 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/lateralPesLemniscus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralPesLemniscus.jsonld @@ -4,22 +4,19 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralPesLemniscus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral pes lemniscus' is a nervous system lemniscus. It is part of the midbrain tegmentum.", - "description": "", + "definition": "Is a nervous system lemniscus. Is part of the midbrain tegmentum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003010) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106094", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003010#lateral-pes-lemniscus-1", "name": "lateral pes lemniscus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003010", "synonym": [ "deep pes lemniscus", - "fasciculi laterales pontis", "fussschleife", "lateral pontine bundle", - "Laterale Haubenfussschleife", - "Laterale pontine Buendel", - "lpl", - "pes lemnisci profundus", - "pes lemniscus lateralis", + "laterale haubenfussschleife", + "laterale pontine buendel", "pes lemniscus profond" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralRecessOfThirdVetricle.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralRecessOfThirdVetricle.jsonld new file mode 100644 index 000000000..8a102a928 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralRecessOfThirdVetricle.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralRecessOfThirdVetricle", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the third ventricle. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008902) ('is_a' and 'relationship')]", + "description": "Lateral protrusion of the third ventricle. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008902)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008902#lateral-recess-of-third-vetricle", + "name": "lateral recess of third vetricle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008902", + "synonym": [ + "lateral recess of diencephalic ventricle" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralSeptalComplex.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralSeptalComplex.jsonld index e796a554f..7bc99d895 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/lateralSeptalComplex.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralSeptalComplex.jsonld @@ -4,11 +4,14 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralSeptalComplex", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral septal complex' is a septal nuclear complex. It is part of the striatum.", - "description": "The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour.", + "definition": "Is a septal nuclear complex. Is part of the striatum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007628) ('is_a' and 'relationship')]", + "description": "The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007628)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728564", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007628#lateral-septal-complex", "name": "lateral septal complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007628", - "synonym": null + "synonym": [ + "lateral septal area" + ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/lateralZoneOfHypothalamus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/lateralZoneOfHypothalamus.jsonld new file mode 100644 index 000000000..a6e639125 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/lateralZoneOfHypothalamus.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralZoneOfHypothalamus", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is part of the hypothalamus. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002273)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002273#lateral-zone-of-hypothalamus", + "name": "lateral zone of hypothalamus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002273", + "synonym": [ + "hypothalamus lateral zone", + "zona lateralis hypothalamicae" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/hypothalamus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/hypothalamus.jsonld index c0c3b6a0e..8c42e1749 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/hypothalamus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/hypothalamus.jsonld @@ -4,17 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/hypothalamus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Hypothalamus' is a regional part of brain. It is part of the limbic system and thalamic complex.", - "description": "Ventral part of the diencephalon extending from the region of the optic chiasm to the caudal border of the mammillary bodies and forming the inferior and lateral walls of the third ventricle.The ventral topographic division of the interbrain. The first adequate description of the hypothalamus as a layer of gray matter surrounding the lower half of the third ventricle (Galen, c173) was provided by Wharton (1656, see 1966 translation, p. 170). His (1893, pp. 159-162) introduced the term but assigned the preoptic region (Swanson, 1976, pp. 229-235) of the hypothalamus to the telencephalon (His, 1893b). The definition here was introduced for vertebrates by Kuhlenbeck (1927, p. 67, Ch. 9).", + "definition": "Is a regional part of brain. Is part of the limbic system and the thalamic complex. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001898) ('is_a' and 'relationship')]", + "description": "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001898)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105177", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001898#hypothalamus-1", "name": "hypothalamus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001898", "synonym": [ - "Hy", - "Hypencephalon", - "Preoptico-hypothalamic area", - "Preoptico-hypothalamic region", - "hypothalamus" + "preoptico-hypothalamic area", + "preoptico-hypothalamic region" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/induseumGriseum.jsonld b/instances/v4.0/terminologies/UBERONParcellation/induseumGriseum.jsonld index 0b9d5276f..9aaa05a0c 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/induseumGriseum.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/induseumGriseum.jsonld @@ -4,22 +4,14 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/induseumGriseum", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Induseum griseum' is a white matter of limbic lobe and stria of telencephalon. It is part of the hippocampal formation and supracallosal gyrus.", - "description": "Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed)", + "definition": "Is a white matter of limbic lobe and stria of telencephalon. Is part of the hippocampal formation and the supracallosal gyrus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015793) ('is_a' and 'relationship')]", + "description": "Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015793)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105421", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015793#induseum-griseum", "name": "induseum griseum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015793", "synonym": [ - "dorsal hippocampal continuation", - "gray stria of Lancisi", - "gyrus epicallosus", - "gyrus indusium griseum", - "IG", - "indusium griseum", - "superior part of intralimbic gyrus", - "superior segment of intralimbic gyrus", - "supracallosal gyrus", - "supracommissural hippocampus" + "indusium griseum" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/inferiorColliculus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/inferiorColliculus.jsonld index 2685ea233..044db0a72 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/inferiorColliculus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/inferiorColliculus.jsonld @@ -4,22 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorColliculus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Inferior colliculus' is a regional part of brain. It is part of the corpora quadrigemina.", - "description": "Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM).", + "definition": "Is a regional part of brain. Is part of the corpora quadrigemina. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001946) ('is_a' and 'relationship')]", + "description": "Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001946)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105436", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001946#inferior-colliculus-1", "name": "inferior colliculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001946", "synonym": [ "caudal colliculus", - "colliculus caudalis", - "colliculus inferior", - "corpus bigeminalis caudalis", - "corpus bigeminum posterioris", - "corpus quadrigeminum inferius", - "IC", - "inferior colliculi", "posterior colliculus", "posterior corpus quadrigeminum" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld index ba40ee51d..42ea27764 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld @@ -4,15 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorLongitudinalFasciculus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "", - "description": "The 'inferior longitudinal fasciculus' is a white matter fibre bundle. It is a cerebral nerve fasciculus, connecting the temporal and occipital lobe.", + "definition": "Is a cerebral nerve fasciculus. Is part of the white matter of telencephalon and the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034743) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0724061", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034743#inferior-longitudinal-fasciculus", "name": "inferior longitudinal fasciculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034743", - "synonym": [ - "external sagittal stratum", - "fasciculus longitudinalis inferior", - "ilf" - ] + "synonym": null } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld index 29b0aacbd..b370bf24f 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld @@ -4,15 +4,14 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorOccipitofrontalFasciculus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "", - "description": "The 'inferior occipitofrontal fasciculus' is a white matter fibre bundle. It is the inferior part of the occipitofrontal fasciculus.", + "definition": "Is an occipitofrontal fasciculus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034753)]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731728", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034753#inferior-occipitofrontal-fasciculus", "name": "inferior occipitofrontal fasciculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034753", "synonym": [ - "fasciculus occipito-frontalis inferior", - "fasciculus occipitofrontalis inferior", - "inferior fronto-occipital fasciculus" + "inferior occipitofrontal fasciculus" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld b/instances/v4.0/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld index 3d15d90b5..b984466b1 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld @@ -4,26 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorOlivaryComplex", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Inferior olivary complex' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the olivary body.", - "description": "Largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements.", + "definition": "Is a nuclear complex of neuraxis and gray matter of hindbrain. Is part of the olivary body. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002127) ('is_a' and 'relationship')]", + "description": "Largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002127)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105448", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002127#inferior-olivary-complex-1", "name": "inferior olivary complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002127", "synonym": [ - "caudal olivary nuclei", - "complexus olivaris inferior", - "complexus olivaris inferior; nuclei olivares inferiores", - "inferior olivary complex (Vieussens)", "inferior olivary nuclear complex", - "inferior olivary nuclei", - "inferior olivary nucleus", "inferior olive", - "nuclei olivares caudales", - "nuclei olivares inferiores", - "nucleus olivaris caudalis", - "nucleus olivaris inferior", - "oliva", - "regio olivaris inferior" + "oliva" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld new file mode 100644 index 000000000..fd1e702cd --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorPetrosalSinus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a paired venous dural sinus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007160)]", + "description": "The inferior petrosal sinus, within the human head, is an area beneath the brain, which allows blood veins to span the area, from the center of the head downward. It drains from the cavernous sinus (beneath the brain) to the sigmoid sinuses above the internal jugular vein. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007160)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007160#inferior-petrosal-sinus", + "name": "inferior petrosal sinus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007160", + "synonym": [ + "sinus petrosal inferior" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld b/instances/v4.0/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld new file mode 100644 index 000000000..3d1f103cd --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorReticularFormation", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nucleus of medulla oblongata. Is part of the medial column. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000523) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000523#inferior-reticular-formation", + "name": "inferior reticular formation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000523", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld new file mode 100644 index 000000000..385739ae7 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorSagittalSinus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a sagittal sinus. Is part of the tentorial sinus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007152) ('is_a' and 'relationship')]", + "description": "An intracranial venous sinus that lies in a midline location along the lower free border of the falx cerebri of the brain. The sinus receives blood from the great cerebral vein and joins the superior sagittal sinus posteriorly. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007152)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007152#inferior-sagittal-sinus", + "name": "inferior sagittal sinus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007152", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld b/instances/v4.0/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld new file mode 100644 index 000000000..209178a54 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld @@ -0,0 +1,23 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorThalamicPeduncle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a peduncle of thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022242)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022242#inferior-thalamic-peduncle", + "name": "inferior thalamic peduncle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022242", + "synonym": [ + "inferior peduncle", + "pedunculus inferior thalami", + "pedunculus thalami caudalis", + "pedunculus thalami inferior", + "pedunculus thalamicus inferior", + "temporal peduncle", + "temporal thalamic peduncle" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/insula.jsonld b/instances/v4.0/terminologies/UBERONParcellation/insula.jsonld index 8534e0613..846975f52 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/insula.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/insula.jsonld @@ -4,28 +4,21 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/insula", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "Gray matter of the insular region of the neocortex. In gyrencephalic animals, it is part of the insular lobe and lies in the depths of the lateral fissure and covered by portions of the frontal, parietal and temporal lobes. It includes Brodmann areas 13-16.", - "description": "'Insula' is a cerebral hemisphere gray matter. It is part of the cerebral cortex.", + "definition": "Is a cerebral hemisphere gray matter. Is part of the cerebral cortex. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002022) ('is_a' and 'relationship')]", + "description": "Gray matter of the insular region of the neocortex. In gyrencephalic animals, it is part of the insular lobe and lies in the depths of the lateral fissure and covered by portions of the frontal, parietal and temporal lobes. It includes Brodmann areas 13-16. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002022)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105519", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002022#insula-1", "name": "insula", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002022", "synonym": [ "central lobe", - "cortex insularis", "cortex of island", - "iNS", - "insula cerebri", "insula lobule", - "insula of Reil", - "insula Reilii", - "insular cortex", - "insular gyrus", + "insular lobe", "insular lobe", "insular region", - "insulary cortex", "island of Reil", - "lobus insularis", - "morphological insula" + "lobus insularis" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld b/instances/v4.0/terminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld index 49990d56d..ce1ad3a7e 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld @@ -4,16 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Intergeniculate leaflet of the lateral geniculate complex' is a regional part of brain. It is part of the lateral geniculate body.", - "description": "", + "definition": "Is a regional part of brain. Is part of the lateral geniculate body. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035975) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105563", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035975#intergeniculate-leaflet-of-the-lateral-geniculate-complex", "name": "intergeniculate leaflet of the lateral geniculate complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035975", - "synonym": [ - "IGL", - "intergeniculate leaflet", - "intergeniculate leaflet of the lateral geniculate complex", - "lateral geniculate complex" - ] + "synonym": null } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld b/instances/v4.0/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld index 8e7b1ff8b..f33d90300 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld @@ -4,16 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intermediateAcousticStria", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Intermediate acoustic stria' is a stria of neuraxis and white matter of pontine tegmentum.", - "description": "White matter structure containing axons arising from cochlear nuclear complex (Brodal, Neurological Anatomy, 3rd ed, 1985, pg 609)", + "definition": "Is a stria of neuraxis and white matter of pontine tegmentum. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002952)]", + "description": "White matter structure containing axons arising from cochlear nuclear complex (Brodal, Neurological Anatomy, 3rd ed, 1985, pg 609) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002952)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105568", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002952#intermediate-acoustic-stria-1", "name": "intermediate acoustic stria", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002952", "synonym": [ - "commissure of Held", - "intermediate acoustic stria (Held)", - "Intermediate acoustic stria of Held", - "striae acusticae intermedius" + "commissure of held", + "intermediate acoustic stria (held)", + "intermediate acoustic stria of held" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld b/instances/v4.0/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld index 63b413c1a..7b553e6a3 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intermediateHypothalamicRegion", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Intermediate hypothalamic region' is a regional part of brain. It is part of the hypothalamus.", - "description": "The portion of the hypothalamus located generally internal to the region of the infundibulum.", + "definition": "Is a regional part of brain. Is part of the hypothalamus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002555) ('is_a' and 'relationship')]", + "description": "The portion of the hypothalamus located generally internal to the region of the infundibulum. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002555)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105570", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002555#intermediate-hypothalamic-region-1", "name": "intermediate hypothalamic region", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002555", "synonym": [ "area hypothalamica intermedia", - "IHR", - "intermediate hypothalamic area", - "intermediate hypothalamus", - "medial hypothalamus", - "middle hypothalamus", - "regio hypothalamica intermedia" + "intermediate hypothalamic area" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/intermediatePartOfHypophysis.jsonld b/instances/v4.0/terminologies/UBERONParcellation/intermediatePartOfHypophysis.jsonld index 525e4b3f7..dc104fb49 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/intermediatePartOfHypophysis.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/intermediatePartOfHypophysis.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intermediatePartOfHypophysis", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Intermediate part of hypophysis' is a regional part of brain. It is part of the adenohypophysis.", - "description": "", + "definition": "Is a regional part of brain. Is part of the adenohypophysis. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0023752) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105575", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023752#intermediate-part-of-hypophysis-1", "name": "intermediate part of hypophysis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023752", "synonym": [ - "IHP", - "intermediate lobe", - "intermediate lobe of hypophysis", "intermediate part of hypophysis", - "intermediate region of hypophysis", - "middle lobe of hypophysis", - "pituitary gland" + "intermediate part of hypophysis" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/intermediateReticularFormation.jsonld b/instances/v4.0/terminologies/UBERONParcellation/intermediateReticularFormation.jsonld new file mode 100644 index 000000000..1a2fd9d76 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/intermediateReticularFormation.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intermediateReticularFormation", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nuclear complex of neuraxis and gray matter of hindbrain. Is part of the medullary reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009776) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009776#intermediate-reticular-formation", + "name": "intermediate reticular formation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009776", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/internalArcuateFiberBundle.jsonld b/instances/v4.0/terminologies/UBERONParcellation/internalArcuateFiberBundle.jsonld index 6ac7ac441..53efa4e43 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/internalArcuateFiberBundle.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/internalArcuateFiberBundle.jsonld @@ -4,21 +4,19 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/internalArcuateFiberBundle", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Internal arcuate fiber bundle' is a neuron projection bundle and central nervous system cell part cluster. It is part of the white matter of medulla oblongata.", - "description": "Internal arcuate fibers are the axons of second-order neurons contained within the gracile and cuneate nuclei of the medulla oblongata. These fibers cross from one side of the medulla to the other to form the medial lemniscus. Part of the dorsal column-medial lemniscus system (second neuron), the internal arcuate fibers are important for relaying the sensation of fine touch and proprioception to the thalamus and ultimately to the cerebral cortex.", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the white matter of medulla oblongata. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006087) ('is_a' and 'relationship')]", + "description": "Internal arcuate fibers are the axons of second-order neurons contained within the gracile and cuneate nuclei of the medulla oblongata. These fibers cross from one side of the medulla to the other to form the medial lemniscus. Part of the dorsal column-medial lemniscus system (second neuron), the internal arcuate fibers are important for relaying the sensation of fine touch and proprioception to the thalamus and ultimately to the cerebral cortex. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006087)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105582", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006087#internal-arcuate-fiber-bundle-1", "name": "internal arcuate fiber bundle", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006087", "synonym": [ - "arcuate fibers (medial lemniscus)", "arcuate fibers medial lemniscus", "fibrae arcuatae internae", - "fibre arciformes olivares", - "fibre arciformes sensibiles", - "ia", + "internal arcuate fibers", "internal arcuate fibers", "internal arcuate fibres", "internal arcuate tract" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld index 94f0fea33..29d6b9364 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld @@ -4,22 +4,20 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/internalMedullaryLaminaOfThalamus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Internal medullary lamina of thalamus' is a medullary lamina of thalamus.", - "description": "Predominantly white regional part of thalamus consisting of a Y shaped bundle of fibers that runs the anterior-posterior length of thalamus and divides the thalamus into roughly three regions (MM: 2006-10-26)", + "definition": "Is a medullary lamina of thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002762)]", + "description": "Predominantly white regional part of thalamus consisting of a Y shaped bundle of fibers that runs the anterior-posterior length of thalamus and divides the thalamus into roughly three regions (MM: 2006-10-26) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002762)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105586", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002762#internal-medullary-lamina-of-thalamus-1", "name": "internal medullary lamina of thalamus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002762", "synonym": [ "envelope (involucrum medial) (Hassler)", - "iml", "internal medullary lamina", "internal medullary lamina of thalamus", - "internal medullary lamina of the thalamus", "lamina medullaris interna", "lamina medullaris interna thalami", - "lamina medullaris medialis", "lamina medullaris medialis thalami", "lamina medullaris thalami interna" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/interstitialPartOfHyperpalliumApicale.jsonld b/instances/v4.0/terminologies/UBERONParcellation/interstitialPartOfHyperpalliumApicale.jsonld new file mode 100644 index 000000000..54dd955f3 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/interstitialPartOfHyperpalliumApicale.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/interstitialPartOfHyperpalliumApicale", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the hyperpallium apicale. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014758) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014758#interstitial-part-of-hyperpallium-apicale", + "name": "interstitial part of hyperpallium apicale", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014758", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/interthalamicAdhesion.jsonld b/instances/v4.0/terminologies/UBERONParcellation/interthalamicAdhesion.jsonld index ade4b337c..2c1b72f44 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/interthalamicAdhesion.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/interthalamicAdhesion.jsonld @@ -4,15 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/interthalamicAdhesion", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Interthalamic adhesion' is a nervous system commissure.", - "description": "Median gray matter mass that connects the two thalami; present in a large percentage of humans (Heimer, L. The Human Brain and Spinal Cord, 2nd ed., 1995, pg 76n).", + "definition": "Is a nervous system commissure. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006681)]", + "description": "The medial surface of the thalamus constitutes the upper part of the lateral wall of the third ventricle, and is connected to the corresponding surface of the opposite thalamus by a flattened gray band, the Interthalamic adhesion (massa intermedia, middle commissure, gray commissure). In non-human mammals it is a large structure. In humans this mass averages about 1 cm in length in its antero-posterior diameter. It sometimes consists of two parts and occasionally is absent. The interthalamic adhesion is found in 70-80% of humans. It is present more often in females and larger than in males by an average of 53 percent.. When absent in development, no noticeable deficit has been observed. It contains nerve cells and nerve fibers; a few of the latter may cross the middle line, but most of them pass toward the middle line and then curve lateralward on the same side. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006681)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105629", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006681#interthalamic-adhesion", "name": "interthalamic adhesion", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006681", "synonym": [ "interthalamic connection", - "massa intermedia", "middle commissure" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/interveningZone.jsonld b/instances/v4.0/terminologies/UBERONParcellation/interveningZone.jsonld new file mode 100644 index 000000000..eafab6c2a --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/interveningZone.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/interveningZone", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the midbrain-hindbrain boundary. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2001341) ('is_a' and 'relationship')]", + "description": "A zone of delayed differentiation at the midbrainhindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. Geling et al, 2003. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2001341)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2001341#intervening-zone", + "name": "intervening zone", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2001341", + "synonym": [ + "IZ" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/interventricularForamenOfCNS.jsonld b/instances/v4.0/terminologies/UBERONParcellation/interventricularForamenOfCNS.jsonld new file mode 100644 index 000000000..5b7320636 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/interventricularForamenOfCNS.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/interventricularForamenOfCNS", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the ventricular system of central nervous system. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003993)]", + "description": "The paired channels that connect the lateral and third ventricles and allows cerebrospinal fluid produced in the lateral ventricles to flow into the third ventricles. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003993)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003993#interventricular-foramen-of-cns", + "name": "interventricular foramen of CNS", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003993", + "synonym": [ + "foramen interventriculare", + "foramen Monroi", + "interventricular foramen", + "interventricular foramina" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/intralaminarNuclearGroup.jsonld b/instances/v4.0/terminologies/UBERONParcellation/intralaminarNuclearGroup.jsonld index 775ccca1f..491da7266 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/intralaminarNuclearGroup.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/intralaminarNuclearGroup.jsonld @@ -4,24 +4,21 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intralaminarNuclearGroup", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Intralaminar nuclear group' is a nucleus of dorsal thalamus.", - "description": "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted].", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002733)]", + "description": "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002733)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105651", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002733#intralaminar-nuclear-group-1", "name": "intralaminar nuclear group", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002733", "synonym": [ - "ILG", - "intralaminar group of the dorsal thalamus", "intralaminar nuclear complex", "intralaminar nuclear group", "intralaminar nuclear group of thalamus", "intralaminar nuclei of thalamus", - "intralaminar nuclei of the dorsal thalamus", - "intralaminar thalamic nuclear group", "intralaminar thalamic nuclei", "nonspecific thalamic system", "nuclei intralaminares (thalami)", "nuclei intralaminares thalami" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/intrinsicNeuronalCircuit.jsonld b/instances/v4.0/terminologies/UBERONParcellation/intrinsicNeuronalCircuit.jsonld new file mode 100644 index 000000000..f484afc74 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/intrinsicNeuronalCircuit.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intrinsicNeuronalCircuit", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a circuit part of central nervous system. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0026547)]", + "description": "A neuronal circuit where all the participating neurons are bounded within a defined and limited region of the nervous system.(BB). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0026547)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0026547#intrinsic-neuronal-circuit-1", + "name": "intrinsic neuronal circuit", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0026547", + "synonym": [ + "intrinsic neuronal circuit", + "intrinsic neuronal circuit" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/islaMagnaOfCalleja.jsonld b/instances/v4.0/terminologies/UBERONParcellation/islaMagnaOfCalleja.jsonld index 2ed2cacaf..e0c34c3c7 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/islaMagnaOfCalleja.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/islaMagnaOfCalleja.jsonld @@ -4,17 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/islaMagnaOfCalleja", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Isla magna of Calleja' is a regional part of brain. It is part of the island of Calleja.", - "description": "A profile (typically representing a sequence alignment) derived from a matrix of nucleotide (or amino acid) counts per position that reflects information content at each position.", + "definition": "Is a regional part of brain. Is part of the island of Calleja. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0023868) ('is_a' and 'relationship')]", + "description": "Regional part of telencephalon; the most prominent of the islands of Calleja located medially in the nucleus accumbens (adapted from Braininfo.org). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0023868)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105729", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023868#isla-magna-of-calleja-1", "name": "isla magna of Calleja", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023868", "synonym": [ - "ICm", - "insula magna", "isla magna of calleja", - "Large island of Calleja", "major island of Calleja" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/islandOfCalleja.jsonld b/instances/v4.0/terminologies/UBERONParcellation/islandOfCalleja.jsonld index 0124252fc..1801c589d 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/islandOfCalleja.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/islandOfCalleja.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/islandOfCalleja", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Island of Calleja' is a telencephalic nucleus. It is part of the cerebral hemisphere.", - "description": "Small clusters of granule cells located in the olfactory tubercle and also within the Island of Calleja magna that lies between the septum and the nucleus accumbens", + "definition": "Is a telencephalic nucleus. Is part of the cerebral hemisphere. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001881) ('is_a' and 'relationship')]", + "description": "One of the seven small groups of granule cells in the polymorph layer of the olfactory tubercle and one large group, the insula magna, which lies along the border between septum, nucleus accumbens and nucleus of the diagonal band. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001881)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105730", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001881#islands-of-calleja", "name": "island of Calleja", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001881", "synonym": [ "Calleja island", - "ICj", - "insula callejae", - "insulae olfactoriae", - "Islands of Calleja", - "islands of Calleja (olfactory tubercle)", - "Islets of Calleja" + "islands of Calleja" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/jugalRamule.jsonld b/instances/v4.0/terminologies/UBERONParcellation/jugalRamule.jsonld new file mode 100644 index 000000000..a528db936 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/jugalRamule.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/jugalRamule", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a ramus mandibularis externus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_3010778)]", + "description": "This ramule innervates the jugal line of neuromasts and is the dorsal branch of the ramus mandibularis externus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_3010778)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:3010778#jugal-ramule", + "name": "jugal ramule", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_3010778", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/juxtarestiformBody.jsonld b/instances/v4.0/terminologies/UBERONParcellation/juxtarestiformBody.jsonld index 254c4b385..86c7b41d4 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/juxtarestiformBody.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/juxtarestiformBody.jsonld @@ -4,13 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/juxtarestiformBody", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Juxtarestiform body' is a white matter of medulla oblongata. It is part of the inferior cerebellar peduncle.", - "description": "Fibers interconnecting the cerebellum and vestibular nuclei, traveling medial to the restiform body (inferior cerebellar peduncle) (Nolte, The Human Brain, 6th ed., pg 497)", + "definition": "Is a white matter of medulla oblongata. Is part of the inferior cerebellar peduncle. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002592) ('is_a' and 'relationship')]", + "description": "Fibers interconnecting the cerebellum and vestibular nuclei, traveling medial to the restiform body (inferior cerebellar peduncle) (Nolte, The Human Brain, 6th ed., pg 497) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002592)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105804", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002592#juxtarestiform-body-1", "name": "juxtarestiform body", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002592", - "synonym": [ - "corpus juxtarestiforme" - ] + "synonym": null } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/laminaOfSeptumPellucidum.jsonld b/instances/v4.0/terminologies/UBERONParcellation/laminaOfSeptumPellucidum.jsonld index 62caaccf4..10b217d9e 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/laminaOfSeptumPellucidum.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/laminaOfSeptumPellucidum.jsonld @@ -4,16 +4,14 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/laminaOfSeptumPellucidum", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lamina of septum pellucidum' is a central nervous system cell part cluster and nervous system cell part layer. It is part of the septum pellucidum.", - "description": "One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy.", + "definition": "Is a central nervous system cell part cluster and nervous system cell part layer. Is part of the septum pellucidum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002742) ('is_a' and 'relationship')]", + "description": "One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002742)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105979", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002742#lamina-of-septum-pellucidum-1", "name": "lamina of septum pellucidum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002742", "synonym": [ - "lamina of the septum pellucidum", - "lamina septi pellucidi", - "laminae septi pellucidi", "septum pellucidum lamina" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/laminaTerminalisOfCerebralHemisphere.jsonld b/instances/v4.0/terminologies/UBERONParcellation/laminaTerminalisOfCerebralHemisphere.jsonld new file mode 100644 index 000000000..d2da83459 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/laminaTerminalisOfCerebralHemisphere.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/laminaTerminalisOfCerebralHemisphere", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter lamina of cerebral hemisphere. Is part of the cerebral hemisphere white matter. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015117) ('is_a' and 'relationship')]", + "description": "The remnant of the lamina terminalis in the developed brain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015117)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015117#lamina-terminalis-of-cerebral-hemisphere", + "name": "lamina terminalis of cerebral hemisphere", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015117", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lapillus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lapillus.jsonld new file mode 100644 index 000000000..263639a78 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/lapillus.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lapillus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an otolith. Is part of the utricle of membranous labyrinth. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000530) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000530#lapillus", + "name": "lapillus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000530", + "synonym": [ + "utricular otolith", + "utriculith" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/laryngeusVentralis.jsonld b/instances/v4.0/terminologies/UBERONParcellation/laryngeusVentralis.jsonld new file mode 100644 index 000000000..4b916172a --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/laryngeusVentralis.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/laryngeusVentralis", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nerve of head region. Is part of the ramus recurrens. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_3010764) ('is_a' and 'relationship')]", + "description": "A branch of the vagus nerve innervating heart, stomach, and lung muscle. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_3010764)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:3010764#laryngeus-ventralis", + "name": "laryngeus ventralis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_3010764", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralCerebellomedullaryCistern.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralCerebellomedullaryCistern.jsonld new file mode 100644 index 000000000..33d60331a --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralCerebellomedullaryCistern.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralCerebellomedullaryCistern", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a cerebellomedullary cistern. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004051)]", + "description": "The space between the cerebellum and the lateral aspect of the medulla. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004051)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004051#lateral-cerebellomedullary-cistern", + "name": "lateral cerebellomedullary cistern", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004051", + "synonym": [ + "cisterna cerebellomedullaris lateralis" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralDivision.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralDivision.jsonld new file mode 100644 index 000000000..8b6bd2b65 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralDivision.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralDivision", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the valvula cerebelli. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000532) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000532#lateral-division", + "name": "lateral division", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000532", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralEminenceOfHypophysis.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralEminenceOfHypophysis.jsonld index b1992c9eb..16d1bc19d 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/lateralEminenceOfHypophysis.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralEminenceOfHypophysis.jsonld @@ -4,11 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralEminenceOfHypophysis", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral eminence of hypophysis' is part of the pituitary gland.", + "definition": "Is part of the pituitary gland. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0027109)]", "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106054", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027109#lateral-eminence-of-hypophysis-1", "name": "lateral eminence of hypophysis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027109", - "synonym": null + "synonym": [ + "lateral eminence of hypophysis", + "lateral eminence of hypophysis" + ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralForebrainBundle.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralForebrainBundle.jsonld new file mode 100644 index 000000000..86667995d --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralForebrainBundle.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralForebrainBundle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2007012)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2007012#lateral-forebrain-bundle", + "name": "lateral forebrain bundle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2007012", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralGeniculateBody.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralGeniculateBody.jsonld index 61672944d..c8b4582c3 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/lateralGeniculateBody.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralGeniculateBody.jsonld @@ -4,24 +4,17 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralGeniculateBody", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral geniculate body' is a nucleus of dorsal thalamus. It is part of the metathalamus.", - "description": "The group of neurons that serve as the primary processor of visual information received from the retina via the optic tract and send processed information to the visual cortex of the occipital lobe", + "definition": "Is a nucleus of dorsal thalamus. Is part of the metathalamus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001926) ('is_a' and 'relationship')]", + "description": "The group of neurons that serve as the primary processor of visual information received from the retina via the optic tract and send processed information to the visual cortex of the occipital lobe. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001926)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106064", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001926#lateral-geniculate-body-1", "name": "lateral geniculate body", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001926", "synonym": [ - "corpus geniculatum externum", - "corpus geniculatum laterale", "corpus geniculatum laterales", - "corpus geniculatus lateralis", - "external geniculate body", - "lateral geniculate body", "lateral geniculate complex", "lateral geniculate nucleus", - "LGB", - "LGN", - "nucleus corporis geniculati lateralis", "nucleus geniculatus lateralis" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralGlobusPallidus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralGlobusPallidus.jsonld index 343ee7a5c..5ac2fa373 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/lateralGlobusPallidus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralGlobusPallidus.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralGlobusPallidus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral globus pallidus' is a cerebral hemisphere gray matter. It is part of the globus pallidus.", - "description": "The more lateral of the two segments of the globus pallidus, abutting the putamen in species which have both a caudate and putamen; the caudoputamen in other species.", + "definition": "Is a cerebral hemisphere gray matter. Is part of the globus pallidus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002476) ('is_a' and 'relationship')]", + "description": "The more lateral of the two segments of the globus pallidus, abutting the putamen. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002476)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104658", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002476#globus-pallidus-external-segment", "name": "lateral globus pallidus", @@ -14,30 +14,17 @@ "external globus pallidus", "external pallidum", "external part of globus pallidus", - "external segment", - "globus pallidus", - "globus pallidus (rat)", "globus pallidus extermal segment", "globus pallidus external segment", "globus pallidus externus", - "globus pallidus lateral part", - "globus pallidus lateral segment", "globus pallidus lateralis", - "Gpe", - "lateral division of globus pallidus", - "lateral globus pallidus", + "globus pallidus, lateral segment", "lateral pallidal segment", "lateral pallidum", - "lateral part", "lateral part of globus pallidus", - "lateral segment", "lateral segment of globus pallidus", - "lateral segment of the globus pallidus", - "nucleus lateralis globi pallidi", - "pallidum dorsal region external segment", - "pallidum I", "pallidus II", - "pars externa", "pars lateralis globi pallidi medialis" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralGranularEminence.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralGranularEminence.jsonld new file mode 100644 index 000000000..895258cfa --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralGranularEminence.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralGranularEminence", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the vestibulolateralis lobe. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000187) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000187#lateral-granular-eminence", + "name": "lateral granular eminence", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000187", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralLemniscus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralLemniscus.jsonld index f72be27ea..80eea5622 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/lateralLemniscus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralLemniscus.jsonld @@ -4,17 +4,14 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralLemniscus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral lemniscus' is a nervous system lemniscus.", - "description": "A fiber bundle that runs through the medulla, pons and midbrain that arises in the cochlear nucleus and projects to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. The brainstem nuclei include the superior olive, the medial nucleus of the trapezoid body, and the dorsal nucleus of the lateral lemniscus. Fibers leaving these brainstem nuclei ascending to the inferior colliculus rejoin the lateral lemniscus. In that sense, this is not a 'lemniscus' in the true sense of the word (second order, decussated sensory axons), as there is third (and out of the lateral superior olive, fourth) order information coming out of some of these brainstem nuclei. Adapted from Wikipedia.org (MM).", + "definition": "Is a nervous system lemniscus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002953)]", + "description": "A fiber bundle that runs through the medulla, pons and midbrain that arises in the cochlear nucleus and projects to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. The brainstem nuclei include the superior olive, the medial nucleus of the trapezoid body, and the dorsal nucleus of the lateral lemniscus. Fibers leaving these brainstem nuclei ascending to the inferior colliculus rejoin the lateral lemniscus. In that sense, this is not a 'lemniscus' in the true sense of the word (second order, decussated sensory axons), as there is third (and out of the lateral superior olive, fourth) order information coming out of some of these brainstem nuclei. Adapted from Wikipedia.org (MM). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002953)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106074", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002953#lateral-lemniscus-1", "name": "lateral lemniscus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002953", "synonym": [ - "central acoustic tract", - "lateral fillet", - "lateral lemniscus (Reil)", - "lemniscus acusticus", - "lemniscus lateralis" + "lateral fillet" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralLongitudinalStria.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralLongitudinalStria.jsonld new file mode 100644 index 000000000..f03c30800 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralLongitudinalStria.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralLongitudinalStria", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter of limbic lobe and stria of telencephalon. Is part of the supracallosal gyrus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0019283) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019283#lateral-longitudinal-stria", + "name": "lateral longitudinal stria", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019283", + "synonym": [ + "lateral white stria of lancisi" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld index 9fa0411e0..03431fb6f 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral medullary lamina of globus pallidus' is a white matter lamina of cerebral hemisphere. It is part of the globus pallidus.", - "description": "Thin band of myelinated fibers lying on the lateral (external) surface of the globus pallidus, external segment, separating it from the putamen. (Carpenter, A core text of neuroanatomy, 3rd ed., 1985, pg 303).", + "definition": "Is a white matter lamina of cerebral hemisphere. Is part of the globus pallidus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002765) ('is_a' and 'relationship')]", + "description": "The lateral medullary lamina is a thin white structure located in the basal ganglia of the primate brain. Bounded laterally by the putamen and medially by the globus pallidus, it is defined on the basis of Nissl or myelin stain ( Carpenter-1983 ). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002765)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106077", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002765#lateral-medullary-lamina", "name": "lateral medullary lamina of globus pallidus", @@ -16,25 +16,18 @@ "external medullary lamina of corpus striatum", "external medullary lamina of globus pallidus", "external medullary lamina of lentiform nucleus", - "globus pallidus", - "lamella pallidi externa", - "lamina medullaris externa", "lamina medullaris externa corporis striati", - "lamina medullaris externa pallidi", - "lamina medullaris lateralis", "lamina medullaris lateralis corporis striati", - "lamina pallidi externa", "lateral medulary lamina of globus pallidus", "lateral medulary stria", "lateral medullary lamina", "lateral medullary lamina of corpus striatum", "lateral medullary lamina of globus pallidus", "lateral medullary lamina of pallidum", - "lateral medullary lamina of the globus pallidus", "lateral medullary stria", - "lml", "medulary lamina of pallidum", "outer medulary lamina", "outer medullary lamina" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralMedullaryReticularComplex.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralMedullaryReticularComplex.jsonld new file mode 100644 index 000000000..706af8446 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralMedullaryReticularComplex.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralMedullaryReticularComplex", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nuclear complex of neuraxis and gray matter of hindbrain. Is part of the medullary reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009775) ('is_a' and 'relationship')]", + "description": "A nuclear complex of the medullary reticular formation that can be divided into three subnuclei: the parvocellular, magnocellular and the subtrigeminal. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009775)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009775#lateral-medullary-reticular-complex", + "name": "lateral medullary reticular complex", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009775", + "synonym": [ + "lateral group of medullary reticular formation", + "lateral medullary reticular group", + "lateral reticular formation of the medulla oblongata", + "nuclei laterales myelencephali" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld index f8a5aa617..b786355a1 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralNuclearGroupOfThalamus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral nuclear group of thalamus' is a nucleus of dorsal thalamus.", - "description": "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted].", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002736)]", + "description": "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002736)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106078", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002736#lateral-nuclear-group", "name": "lateral nuclear group of thalamus", @@ -18,12 +18,10 @@ "lateral nuclear group of thalamus", "lateral nucleus of thalamus", "lateral thalamic group", - "lateral thalamic nuclear group", - "lateral thalamic nuclear region", "lateral thalamic nuclei", "lateral thalamic nucleus", - "LNG", "nuclei laterales thalami", "nucleus lateralis thalami" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralOcellus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralOcellus.jsonld new file mode 100644 index 000000000..c346b5b5c --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralOcellus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralOcellus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a dorsal ocellus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003162)]", + "description": "The ocellus that is paired. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003162)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003162#lateral-ocellus", + "name": "lateral ocellus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003162", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralPallium.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralPallium.jsonld new file mode 100644 index 000000000..f96abcf50 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralPallium.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralPallium", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the pallium. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014741) ('is_a' and 'relationship')]", + "description": "Subdivision of pallium that is located laterally. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014741)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014741#lateral-pallium", + "name": "lateral pallium", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014741", + "synonym": [ + "area dorsalis telencephali, zona lateralis", + "lateral zone of D", + "lateral zone of dorsal telencephalic area" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralPesLemniscus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralPesLemniscus.jsonld index b93cb9f77..676c35ef7 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/lateralPesLemniscus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralPesLemniscus.jsonld @@ -4,22 +4,19 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralPesLemniscus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral pes lemniscus' is a nervous system lemniscus. It is part of the midbrain tegmentum.", - "description": "", + "definition": "Is a nervous system lemniscus. Is part of the midbrain tegmentum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003010) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106094", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003010#lateral-pes-lemniscus-1", "name": "lateral pes lemniscus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003010", "synonym": [ "deep pes lemniscus", - "fasciculi laterales pontis", "fussschleife", "lateral pontine bundle", - "Laterale Haubenfussschleife", - "Laterale pontine Buendel", - "lpl", - "pes lemnisci profundus", - "pes lemniscus lateralis", + "laterale haubenfussschleife", + "laterale pontine buendel", "pes lemniscus profond" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralRecessOfThirdVetricle.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralRecessOfThirdVetricle.jsonld new file mode 100644 index 000000000..95577952b --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralRecessOfThirdVetricle.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralRecessOfThirdVetricle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the third ventricle. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008902) ('is_a' and 'relationship')]", + "description": "Lateral protrusion of the third ventricle. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008902)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008902#lateral-recess-of-third-vetricle", + "name": "lateral recess of third vetricle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008902", + "synonym": [ + "lateral recess of diencephalic ventricle" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralSeptalComplex.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralSeptalComplex.jsonld index dca9341ca..bb3fd319a 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/lateralSeptalComplex.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralSeptalComplex.jsonld @@ -4,11 +4,14 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralSeptalComplex", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Lateral septal complex' is a septal nuclear complex. It is part of the striatum.", - "description": "The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour.", + "definition": "Is a septal nuclear complex. Is part of the striatum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007628) ('is_a' and 'relationship')]", + "description": "The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007628)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728564", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007628#lateral-septal-complex", "name": "lateral septal complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007628", - "synonym": null + "synonym": [ + "lateral septal area" + ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/lateralZoneOfHypothalamus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/lateralZoneOfHypothalamus.jsonld new file mode 100644 index 000000000..b63a64f9f --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/lateralZoneOfHypothalamus.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/lateralZoneOfHypothalamus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the hypothalamus. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002273)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002273#lateral-zone-of-hypothalamus", + "name": "lateral zone of hypothalamus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002273", + "synonym": [ + "hypothalamus lateral zone", + "zona lateralis hypothalamicae" + ] +} +