From 1918579d13e74ff7bc0fe0c469c05eeec9ed6be1 Mon Sep 17 00:00:00 2001 From: Ulrike Schlegel Date: Sat, 18 Jan 2025 15:07:02 +0100 Subject: [PATCH 1/3] UBERON_ungrouped-A01 --- ...soryMedullaryLaminaOfGlobusPallidus.jsonld | 13 ++++-------- .../UBERONParcellation/adenohypophysis.jsonld | 16 ++++---------- .../alarPlateMidbrain.jsonld | 15 +++++++++++++ .../UBERONParcellation/amiculum.jsonld | 15 +++++++++++++ .../amiculumOfInferiorOlive.jsonld | 21 +++++++++++++++++++ .../UBERONParcellation/ampullaCaudalis.jsonld | 15 +++++++++++++ .../UBERONParcellation/amygdala.jsonld | 14 ++++--------- .../UBERONParcellation/ansaCervicalis.jsonld | 17 +++++++++++++++ .../ansaLenticularis.jsonld | 6 +++--- .../ansaPeduncularis.jsonld | 19 +++++++++++++++++ .../anteriorColumnOfFornix.jsonld | 9 ++++---- .../anteriorCoronaRadiata.jsonld | 17 +++++++++++++++ .../anteriorHypothalamicRegion.jsonld | 10 ++++----- .../anteriorLimbOfInternalCapsule.jsonld | 12 +++++------ .../UBERONParcellation/anteriorMacula.jsonld | 17 +++++++++++++++ .../anteriorMedianEminence.jsonld | 10 ++++----- .../anteriorNuclearGroup.jsonld | 17 ++++----------- .../anteriorPerforatedSubstance.jsonld | 16 +++++--------- .../anteriorThalamicPeduncle.jsonld | 21 +++++++++++++++++++ .../anteriorThalamicRadiation.jsonld | 10 ++++----- .../UBERONParcellation/aorticPlexus.jsonld | 15 +++++++++++++ .../arachnoidTrabecula.jsonld | 15 +++++++++++++ .../UBERONParcellation/arachnoidVillus.jsonld | 15 +++++++++++++ .../UBERONParcellation/arborVitae.jsonld | 18 ++++++++++++++++ .../UBERONParcellation/arcopallium.jsonld | 14 ++++--------- .../arcuateFasciculus.jsonld | 10 ++++----- .../UBERONParcellation/asteriscus.jsonld | 18 ++++++++++++++++ .../auditoryRadiation.jsonld | 20 ++++++++++++++++++ .../UBERONParcellation/basalCistern.jsonld | 15 +++++++++++++ .../UBERONParcellation/basalForebrain.jsonld | 10 ++++----- .../basalNuclearComplex.jsonld | 11 ++++------ .../UBERONParcellation/basalPartOfPons.jsonld | 10 +++------ .../basalPlateMedullaOblongata.jsonld | 17 +++++++++++++++ .../UBERONParcellation/basisPontis.jsonld | 18 ++++++++++++++++ ...basolateralAmygdaloidNuclearComplex.jsonld | 11 +++++----- .../bodyOfCorpusCallosum.jsonld | 12 ++++------- .../UBERONParcellation/bodyOfFornix.jsonld | 6 +++--- .../brachiumOfInferiorColliculus.jsonld | 10 +++------ .../brachiumOfSuperiorColliculus.jsonld | 10 +++------ .../UBERONParcellation/brain.jsonld | 15 +++++++++++++ .../brainEndothelium.jsonld | 5 +++-- .../UBERONParcellation/brainEpendyma.jsonld | 9 +++++--- .../UBERONParcellation/brainGrayMatter.jsonld | 13 +++++++++--- .../brainMarginalZone.jsonld | 5 +++-- .../UBERONParcellation/brainMeninx.jsonld | 11 +++++++--- .../UBERONParcellation/brainstem.jsonld | 13 ++++-------- .../bulboidCorpuscle.jsonld | 15 +++++++++++++ .../calcifiedStructureOfBrain.jsonld | 3 ++- .../UBERONParcellation/canalOfSchlemm.jsonld | 21 +++++++++++++++++++ .../capsuleOfMedialGeniculateBody.jsonld | 6 +++--- ...soryMedullaryLaminaOfGlobusPallidus.jsonld | 13 ++++-------- .../UBERONParcellation/adenohypophysis.jsonld | 16 ++++---------- .../alarPlateMidbrain.jsonld | 15 +++++++++++++ .../UBERONParcellation/amiculum.jsonld | 15 +++++++++++++ .../amiculumOfInferiorOlive.jsonld | 21 +++++++++++++++++++ .../UBERONParcellation/ampullaCaudalis.jsonld | 15 +++++++++++++ .../UBERONParcellation/amygdala.jsonld | 14 ++++--------- .../UBERONParcellation/ansaCervicalis.jsonld | 17 +++++++++++++++ .../ansaLenticularis.jsonld | 6 +++--- .../ansaPeduncularis.jsonld | 19 +++++++++++++++++ .../anteriorColumnOfFornix.jsonld | 9 ++++---- .../anteriorCoronaRadiata.jsonld | 17 +++++++++++++++ .../anteriorHypothalamicRegion.jsonld | 10 ++++----- .../anteriorLimbOfInternalCapsule.jsonld | 12 +++++------ .../UBERONParcellation/anteriorMacula.jsonld | 17 +++++++++++++++ .../anteriorMedianEminence.jsonld | 10 ++++----- .../anteriorNuclearGroup.jsonld | 17 ++++----------- .../anteriorPerforatedSubstance.jsonld | 16 +++++--------- .../anteriorThalamicPeduncle.jsonld | 21 +++++++++++++++++++ .../anteriorThalamicRadiation.jsonld | 10 ++++----- .../UBERONParcellation/aorticPlexus.jsonld | 15 +++++++++++++ .../arachnoidTrabecula.jsonld | 15 +++++++++++++ .../UBERONParcellation/arachnoidVillus.jsonld | 15 +++++++++++++ .../UBERONParcellation/arborVitae.jsonld | 18 ++++++++++++++++ .../UBERONParcellation/arcopallium.jsonld | 14 ++++--------- .../arcuateFasciculus.jsonld | 10 ++++----- .../UBERONParcellation/asteriscus.jsonld | 18 ++++++++++++++++ .../auditoryRadiation.jsonld | 20 ++++++++++++++++++ .../UBERONParcellation/basalCistern.jsonld | 15 +++++++++++++ .../UBERONParcellation/basalForebrain.jsonld | 10 ++++----- .../basalNuclearComplex.jsonld | 11 ++++------ .../UBERONParcellation/basalPartOfPons.jsonld | 10 +++------ .../basalPlateMedullaOblongata.jsonld | 17 +++++++++++++++ .../UBERONParcellation/basisPontis.jsonld | 18 ++++++++++++++++ ...basolateralAmygdaloidNuclearComplex.jsonld | 11 +++++----- .../bodyOfCorpusCallosum.jsonld | 12 ++++------- .../UBERONParcellation/bodyOfFornix.jsonld | 6 +++--- .../brachiumOfInferiorColliculus.jsonld | 10 +++------ .../brachiumOfSuperiorColliculus.jsonld | 10 +++------ .../UBERONParcellation/brain.jsonld | 15 +++++++++++++ .../brainEndothelium.jsonld | 5 +++-- .../UBERONParcellation/brainEpendyma.jsonld | 9 +++++--- .../UBERONParcellation/brainGrayMatter.jsonld | 13 +++++++++--- .../brainMarginalZone.jsonld | 5 +++-- .../UBERONParcellation/brainMeninx.jsonld | 11 +++++++--- .../UBERONParcellation/brainstem.jsonld | 13 ++++-------- .../bulboidCorpuscle.jsonld | 15 +++++++++++++ .../calcifiedStructureOfBrain.jsonld | 3 ++- .../UBERONParcellation/canalOfSchlemm.jsonld | 21 +++++++++++++++++++ .../capsuleOfMedialGeniculateBody.jsonld | 6 +++--- ...soryMedullaryLaminaOfGlobusPallidus.jsonld | 13 ++++-------- .../UBERONParcellation/adenohypophysis.jsonld | 16 ++++---------- .../alarPlateMidbrain.jsonld | 15 +++++++++++++ .../UBERONParcellation/amiculum.jsonld | 15 +++++++++++++ .../amiculumOfInferiorOlive.jsonld | 21 +++++++++++++++++++ .../UBERONParcellation/ampullaCaudalis.jsonld | 15 +++++++++++++ .../UBERONParcellation/amygdala.jsonld | 14 ++++--------- .../UBERONParcellation/ansaCervicalis.jsonld | 17 +++++++++++++++ .../ansaLenticularis.jsonld | 6 +++--- .../ansaPeduncularis.jsonld | 19 +++++++++++++++++ .../anteriorColumnOfFornix.jsonld | 9 ++++---- .../anteriorCoronaRadiata.jsonld | 17 +++++++++++++++ .../anteriorHypothalamicRegion.jsonld | 10 ++++----- .../anteriorLimbOfInternalCapsule.jsonld | 12 +++++------ .../UBERONParcellation/anteriorMacula.jsonld | 17 +++++++++++++++ .../anteriorMedianEminence.jsonld | 10 ++++----- .../anteriorNuclearGroup.jsonld | 17 ++++----------- .../anteriorPerforatedSubstance.jsonld | 16 +++++--------- .../anteriorThalamicPeduncle.jsonld | 21 +++++++++++++++++++ .../anteriorThalamicRadiation.jsonld | 10 ++++----- .../UBERONParcellation/aorticPlexus.jsonld | 15 +++++++++++++ .../arachnoidTrabecula.jsonld | 15 +++++++++++++ .../UBERONParcellation/arachnoidVillus.jsonld | 15 +++++++++++++ .../UBERONParcellation/arborVitae.jsonld | 18 ++++++++++++++++ .../UBERONParcellation/arcopallium.jsonld | 14 ++++--------- .../arcuateFasciculus.jsonld | 10 ++++----- .../UBERONParcellation/asteriscus.jsonld | 18 ++++++++++++++++ .../auditoryRadiation.jsonld | 20 ++++++++++++++++++ .../UBERONParcellation/basalCistern.jsonld | 15 +++++++++++++ .../UBERONParcellation/basalForebrain.jsonld | 10 ++++----- .../basalNuclearComplex.jsonld | 11 ++++------ .../UBERONParcellation/basalPartOfPons.jsonld | 10 +++------ .../basalPlateMedullaOblongata.jsonld | 17 +++++++++++++++ .../UBERONParcellation/basisPontis.jsonld | 18 ++++++++++++++++ ...basolateralAmygdaloidNuclearComplex.jsonld | 11 +++++----- .../bodyOfCorpusCallosum.jsonld | 12 ++++------- .../UBERONParcellation/bodyOfFornix.jsonld | 6 +++--- .../brachiumOfInferiorColliculus.jsonld | 10 +++------ .../brachiumOfSuperiorColliculus.jsonld | 10 +++------ .../UBERONParcellation/brain.jsonld | 15 +++++++++++++ .../brainEndothelium.jsonld | 5 +++-- .../UBERONParcellation/brainEpendyma.jsonld | 9 +++++--- .../UBERONParcellation/brainGrayMatter.jsonld | 13 +++++++++--- .../brainMarginalZone.jsonld | 5 +++-- .../UBERONParcellation/brainMeninx.jsonld | 11 +++++++--- .../UBERONParcellation/brainstem.jsonld | 13 ++++-------- .../bulboidCorpuscle.jsonld | 15 +++++++++++++ .../calcifiedStructureOfBrain.jsonld | 3 ++- .../UBERONParcellation/canalOfSchlemm.jsonld | 21 +++++++++++++++++++ .../capsuleOfMedialGeniculateBody.jsonld | 6 +++--- 150 files changed, 1446 insertions(+), 537 deletions(-) create mode 100644 instances/latest/terminologies/UBERONParcellation/alarPlateMidbrain.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/amiculum.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/amiculumOfInferiorOlive.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/ampullaCaudalis.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/ansaCervicalis.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/ansaPeduncularis.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/anteriorCoronaRadiata.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/anteriorMacula.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/anteriorThalamicPeduncle.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/aorticPlexus.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/arachnoidTrabecula.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/arachnoidVillus.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/arborVitae.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/asteriscus.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/auditoryRadiation.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/basalCistern.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/basalPlateMedullaOblongata.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/basisPontis.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/brain.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/bulboidCorpuscle.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/canalOfSchlemm.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/alarPlateMidbrain.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/amiculum.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/amiculumOfInferiorOlive.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/ampullaCaudalis.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/ansaPeduncularis.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/anteriorCoronaRadiata.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/anteriorMacula.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/anteriorThalamicPeduncle.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/aorticPlexus.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/arachnoidTrabecula.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/arachnoidVillus.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/arborVitae.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/asteriscus.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/auditoryRadiation.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/basalCistern.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/basalPlateMedullaOblongata.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/basisPontis.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/brain.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/bulboidCorpuscle.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/canalOfSchlemm.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/alarPlateMidbrain.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/amiculum.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/amiculumOfInferiorOlive.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/ampullaCaudalis.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/ansaPeduncularis.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/anteriorCoronaRadiata.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/anteriorMacula.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/anteriorThalamicPeduncle.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/aorticPlexus.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/arachnoidTrabecula.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/arachnoidVillus.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/arborVitae.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/asteriscus.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/auditoryRadiation.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/basalCistern.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/basalPlateMedullaOblongata.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/basisPontis.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/brain.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/bulboidCorpuscle.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/canalOfSchlemm.jsonld diff --git a/instances/latest/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld b/instances/latest/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld index 7c4a35bec..7bfd954db 100644 --- a/instances/latest/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Accessory medullary lamina of globus pallidus' is a white matter lamina of cerebral hemisphere. It is part of the medial globus pallidus.", - "description": "Thin bundle of myelinated axons that divides the medial pallidal segment into outer and inner portions (Carpenter, Core Text of Neuroanatomy, 3rd ed., 1985, pg. 303).", + "definition": "Is a white matter lamina of cerebral hemisphere. Is part of the medial globus pallidus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002763) ('is_a' and 'relationship')]", + "description": "Thin bundle of myelinated axons that divides the medial pallidal segment into outer and inner portions (Carpenter, Core Text of Neuroanatomy, 3rd ed., 1985, pg. 303). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002763)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100214", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002763#accessory-medullary-lamina", "name": "accessory medullary lamina of globus pallidus", @@ -15,14 +15,9 @@ "accessory medullary lamina", "accessory medullary lamina of corpus striatum", "accessory medullary lamina of globus pallidus", - "accessory medullary lamina of pallidum", "accessory medullary lamina pallidus", "incomplete medullary lamina of globus pallidus", - "incomplete medullary lamina of the globus pallidus", - "lamella pallidi incompleta", - "lamina medullaris accessoria", - "lamina medullaris accessoria corporis striati", - "lamina medullaris incompleta pallidi", - "lamina pallidi incompleta" + "lamina medullaris accessoria corporis striati" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/adenohypophysis.jsonld b/instances/latest/terminologies/UBERONParcellation/adenohypophysis.jsonld index 73ceab87d..c44561ba1 100644 --- a/instances/latest/terminologies/UBERONParcellation/adenohypophysis.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/adenohypophysis.jsonld @@ -4,30 +4,22 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/adenohypophysis", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Adenohypophysis' is part of the pituitary gland.", - "description": "The adenohypophysis, which consists of the anterior and intermediate lobes of the pituitary gland, contains several types of endocrine cells, which secrete systemic hormones such as adenocorticotropic hormone (ACTH), GH, LH/FSH, TSH and prolactin in response to hypothalamus-derived releasing hormones (PMID: 22080957).", + "definition": "Is part of the pituitary gland. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002196)]", + "description": "The glandular, anterior lobe of the pituitary gland. The anterior pituitary regulates several physiological processes including stress, growth, and reproduction. The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002196)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100315", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002196#adenohypophysis-1", "name": "adenohypophysis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002196", "synonym": [ - "AHP", "anterior hypophysis", - "anterior lobe", "anterior lobe (hypophysis)", "anterior lobe of hypophysis", "anterior lobe of pituitary", "anterior lobe of pituitary gland", - "anterior lobe of the pituitary", "anterior pituitary", - "anterior pituitary gland", - "cranial lobe", - "lobus anterior", "lobus anterior (glandula pituitaria)", "lobus anterior hypophysis", - "pituitary anterior lobe", - "pituitary gland", - "pituitary glandanterior lobe", - "rostral lobe" + "pituitary gland, anterior lobe" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/alarPlateMidbrain.jsonld b/instances/latest/terminologies/UBERONParcellation/alarPlateMidbrain.jsonld new file mode 100644 index 000000000..4b3787178 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/alarPlateMidbrain.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/alarPlateMidbrain", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the midbrain. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2001357)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2001357#alar-plate-midbrain", + "name": "alar plate midbrain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2001357", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/amiculum.jsonld b/instances/latest/terminologies/UBERONParcellation/amiculum.jsonld new file mode 100644 index 000000000..656087925 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/amiculum.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/amiculum", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035939)]", + "description": "A dense surrounding coat of white fibers, as the sheath of the inferior olive and of the dentate nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035939)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035939#amiculum", + "name": "amiculum", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035939", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/amiculumOfInferiorOlive.jsonld b/instances/latest/terminologies/UBERONParcellation/amiculumOfInferiorOlive.jsonld new file mode 100644 index 000000000..b4d8bb2da --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/amiculumOfInferiorOlive.jsonld @@ -0,0 +1,21 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/amiculumOfInferiorOlive", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter of myelencephalon and amiculum. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035938)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035938#amiculum-of-inferior-olive", + "name": "amiculum of inferior olive", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035938", + "synonym": [ + "amiculum of olive", + "amiculum of the olive", + "amiculum olivae", + "amiculum olivare", + "inferior olive amiculum" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/ampullaCaudalis.jsonld b/instances/latest/terminologies/UBERONParcellation/ampullaCaudalis.jsonld new file mode 100644 index 000000000..1e191ac77 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/ampullaCaudalis.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/ampullaCaudalis", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the central canal of spinal cord. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0011360) ('is_a' and 'relationship')]", + "description": "A ventricle-like space at the end of the central canal. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0011360)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0011360#ampulla-caudalis", + "name": "ampulla caudalis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0011360", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/amygdala.jsonld b/instances/latest/terminologies/UBERONParcellation/amygdala.jsonld index 8c8807a49..81009c7e6 100644 --- a/instances/latest/terminologies/UBERONParcellation/amygdala.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/amygdala.jsonld @@ -4,24 +4,18 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/amygdala", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Amygdala' is a basal ganglion and cerebral hemisphere gray matter. It is part of the limbic system and temporal lobe.", - "description": "Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM).", + "definition": "Is a basal ganglion and cerebral hemisphere gray matter. Is part of the limbic system and the temporal lobe. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001876) ('is_a' and 'relationship')]", + "description": "Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001876)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100573", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001876#amygdala-1", "name": "amygdala", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001876", "synonym": [ - "amygdaloid area", "amygdaloid body", "amygdaloid complex", "amygdaloid nuclear complex", - "amygdaloid nuclear group", "amygdaloid nuclear groups", - "amygdaloid nucleus", - "archistriatum", - "Archistriatum", - "corpus amygdalae", - "corpus amygdaloideum", - "nucleus amygdalae" + "archistriatum" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/ansaCervicalis.jsonld b/instances/latest/terminologies/UBERONParcellation/ansaCervicalis.jsonld new file mode 100644 index 000000000..762217535 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/ansaCervicalis.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/ansaCervicalis", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nerve. Is part of the cervical nerve plexus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005430) ('is_a' and 'relationship')]", + "description": "A loop of nerves that are part of the cervical plexus that lies superficial to the internal jugular vein in the carotid sheath. Branches from the ansa cervicalis innervate three of the four infrahyoid muscles, including the sternohyoid muscle, the sternothyroid muscle, and the omohyoid muscle. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005430)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005430#ansa-cervicalis", + "name": "ansa cervicalis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005430", + "synonym": [ + "ansa cervicalis" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/ansaLenticularis.jsonld b/instances/latest/terminologies/UBERONParcellation/ansaLenticularis.jsonld index f2b4772be..86788e9e0 100644 --- a/instances/latest/terminologies/UBERONParcellation/ansaLenticularis.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/ansaLenticularis.jsonld @@ -4,16 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/ansaLenticularis", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Ansa lenticularis' is a diencephalic white matter. It is part of the ventral thalamus.", - "description": "White matter bundle containing part of the projection of the globus pallidus to the thalamus, forming a compact, conspicuous bundle running beneath the internal capsule and hooking around its medial edge (Nolte, The Human Brain, 6th ed., 2009, pg 659)", + "definition": "Is a diencephalic white matter. Is part of the ventral thalamus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009641) ('is_a' and 'relationship')]", + "description": "The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009641)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100654", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009641#ansa-lenticularis-1", "name": "ansa lenticularis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009641", "synonym": [ - "al", "ansa lenticularis in thalamo", "ansa lenticularis in thalamus", "ventral peduncle of lateral forebrain bundle" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/ansaPeduncularis.jsonld b/instances/latest/terminologies/UBERONParcellation/ansaPeduncularis.jsonld new file mode 100644 index 000000000..87946b932 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/ansaPeduncularis.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/ansaPeduncularis", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the ventral thalamus and the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034896) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034896#ansa-peduncularis", + "name": "ansa peduncularis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034896", + "synonym": [ + "ansa peduncularis in thalamo", + "ansa peduncularis in thalamus", + "peduncular loop" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/anteriorColumnOfFornix.jsonld b/instances/latest/terminologies/UBERONParcellation/anteriorColumnOfFornix.jsonld index 9c131f2cd..5b28a1330 100644 --- a/instances/latest/terminologies/UBERONParcellation/anteriorColumnOfFornix.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/anteriorColumnOfFornix.jsonld @@ -4,18 +4,17 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorColumnOfFornix", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Anterior column of fornix' is a cerebral hemisphere white matter. It is part of the fornix of brain.", - "description": "", + "definition": "Is a cerebral hemisphere white matter. Is part of the fornix of brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002940) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100691", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002940#anterior-column-of-fornix-1", "name": "anterior column of fornix", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002940", "synonym": [ - "anterior column of fornix", "anterior crus of fornix", "anterior pillar of fornix", "columna fornicis anterior", - "crus anterius", - "fornix" + "fornix, crus anterius" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/anteriorCoronaRadiata.jsonld b/instances/latest/terminologies/UBERONParcellation/anteriorCoronaRadiata.jsonld new file mode 100644 index 000000000..a2a6ce8c4 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/anteriorCoronaRadiata.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorCoronaRadiata", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the corona radiata of neuraxis. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022425) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022425#anterior-corona-radiata", + "name": "anterior corona radiata", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022425", + "synonym": [ + "anterior portion of corona radiata" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/anteriorHypothalamicRegion.jsonld b/instances/latest/terminologies/UBERONParcellation/anteriorHypothalamicRegion.jsonld index 0b57ef5da..142217dea 100644 --- a/instances/latest/terminologies/UBERONParcellation/anteriorHypothalamicRegion.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/anteriorHypothalamicRegion.jsonld @@ -4,17 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorHypothalamicRegion", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Anterior hypothalamic region' is a regional part of brain. It is part of the hypothalamus.", - "description": "", + "definition": "Is a regional part of brain. Is part of the hypothalamus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002550) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100710", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002550#anterior-hypothalamic-region-1", "name": "anterior hypothalamic region", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002550", "synonym": [ - "AHR", "anterior hypothalamic area", - "anterior hypothalamus", - "chiasmal zone", - "preoptic division" + "chiasmal zone" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld b/instances/latest/terminologies/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld index 8888dfb74..807403631 100644 --- a/instances/latest/terminologies/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld @@ -4,17 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorLimbOfInternalCapsule", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Anterior limb of internal capsule' is a limb of internal capsule of telencephalon.", - "description": "Portion of internal capsule lying between the lenticular nucleus and the head of the caudate nucleus.", + "definition": "Is a limb of internal capsule of telencephalon. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014526)]", + "description": "Portion of internal capsule lying between the lenticular nucleus and the head of the caudate nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014526)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100712", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014526#anterior-limb-of-internal-capsule-1", "name": "anterior limb of internal capsule", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014526", "synonym": [ - "anterior internal capsule", - "anterior limb", - "capsula interna", - "crus anterius capsulae internae", - "pars anterior" + "capsula interna, pars anterior", + "crus anterius capsulae internae" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/anteriorMacula.jsonld b/instances/latest/terminologies/UBERONParcellation/anteriorMacula.jsonld new file mode 100644 index 000000000..855b8bdc5 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/anteriorMacula.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorMacula", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the otolith organ. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", + "description": "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000168#anterior-macula", + "name": "anterior macula", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000168", + "synonym": [ + "am" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/anteriorMedianEminence.jsonld b/instances/latest/terminologies/UBERONParcellation/anteriorMedianEminence.jsonld index 8c73e14f4..cfb4410d7 100644 --- a/instances/latest/terminologies/UBERONParcellation/anteriorMedianEminence.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/anteriorMedianEminence.jsonld @@ -4,14 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorMedianEminence", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Anterior median eminence' is a regional part of brain. It is part of the median eminence of neurohypophysis.", - "description": "", + "definition": "Is a regional part of brain. Is part of the median eminence of neurohypophysis. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002648) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100714", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002648#anterior-median-eminence-1", "name": "anterior median eminence", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002648", - "synonym": [ - "AME", - "eminentia mediana anterior" - ] + "synonym": null } + diff --git a/instances/latest/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld b/instances/latest/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld index 63b464426..7ee27c56c 100644 --- a/instances/latest/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld @@ -4,33 +4,24 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorNuclearGroup", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Anterior nuclear group' is a nucleus of dorsal thalamus.", - "description": "Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26)", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002788)]", + "description": "Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002788)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100718", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002788#anterior-nuclear-group-1", "name": "anterior nuclear group", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002788", "synonym": [ - "ANG", - "anterior group of thalamus", - "anterior group of the dorsal thalamus", "anterior nuclear group", "anterior nuclear group of thalamus", - "anterior nuclear group of the thalamus", "anterior nuclei of thalamus", "anterior nucleus of thalamus", "anterior thalamic group", - "anterior thalamic nuclear group", "anterior thalamic nuclei", - "anterior thalamic nucleus", "anterior thalamus", - "dorsal thalamus anterior division", "nuclei anterior thalami", "nuclei anteriores (thalami)", "nuclei anteriores thalami", - "nuclei thalamicus anterior", - "nucleus anterior thalami", - "nucleus thalamicus anterior", - "rostral thalamic nucleus" + "nuclei thalamicus anterior" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/anteriorPerforatedSubstance.jsonld b/instances/latest/terminologies/UBERONParcellation/anteriorPerforatedSubstance.jsonld index cd64a15c7..63c32a3a1 100644 --- a/instances/latest/terminologies/UBERONParcellation/anteriorPerforatedSubstance.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/anteriorPerforatedSubstance.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorPerforatedSubstance", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Anterior perforated substance' is a regional part of brain. It is part of the telencephalon.", - "description": "Regional part of telencephalon lying on the basal surface and bounded by the olfactory trigone rostrally, the diagonal band medially and caudally and the prepiriform cortex laterally. It is characterized by many perforations caused by small blood vessels entering the gray matter (Meyer et al., J. Comp. Neurol 284: 405, 1989).", + "definition": "Is a regional part of brain. Is part of the telencephalon. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0018141) ('is_a' and 'relationship')]", + "description": "Regional part of telencephalon lying on the basal surface and bounded by the olfactory trigone rostrally, the diagonal band medially and caudally and the prepiriform cortex laterally. It is characterized by many perforations caused by small blood vessels entering the gray matter (Meyer et al., J. Comp. Neurol 284: 405, 1989). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0018141)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100738", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0018141#anterior-perforated-substance-1", "name": "anterior perforated substance", @@ -13,14 +13,8 @@ "synonym": [ "anterior perforated area", "anterior perforated space", - "area olfactoria (Mai)", - "eminentia parolfactoria", - "olfactory area (Carpenter)", - "olfactory area (Mai)", - "olfactory tubercle", - "olfactory tubercle (Ganser)", - "rostral perforated substance", - "substantia perforata anterior", - "tuber olfactorium" + "olfactory area (mai)", + "substantia perforata anterior" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/anteriorThalamicPeduncle.jsonld b/instances/latest/terminologies/UBERONParcellation/anteriorThalamicPeduncle.jsonld new file mode 100644 index 000000000..d66a1db0a --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/anteriorThalamicPeduncle.jsonld @@ -0,0 +1,21 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorThalamicPeduncle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter of telencephalon and peduncle of thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022237)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022237#anterior-thalamic-peduncle", + "name": "anterior thalamic peduncle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022237", + "synonym": [ + "anterior peduncle", + "frontal peduncle", + "frontal thalamic peduncle", + "pedunculus rostralis thalami", + "rostral peduncle of thalamus" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld b/instances/latest/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld index cb719c089..b9ba6d54a 100644 --- a/instances/latest/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld @@ -4,16 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorThalamicRadiation", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "The 'anterior thalamic radiation' is a white matter fibre bundle. It is part of the thalamic complex.", - "description": "", + "definition": "Is a radiation of cerebral hemisphere and radiation of thalamus. Is part of the anterior limb of internal capsule. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034746) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728673", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034746#anterior-thalamic-radiation", "name": "anterior thalamic radiation", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034746", "synonym": [ "anterior radiation of thalamus", - "athf", - "radiatio thalami anterior", - "radiationes thalamicae anteriores" + "anterior thalamic radiation", + "radiatio thalami anterior" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/aorticPlexus.jsonld b/instances/latest/terminologies/UBERONParcellation/aorticPlexus.jsonld new file mode 100644 index 000000000..e3da51698 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/aorticPlexus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/aorticPlexus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an autonomic nerve plexus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035772)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035772#aortic-plexus", + "name": "aortic plexus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035772", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/arachnoidTrabecula.jsonld b/instances/latest/terminologies/UBERONParcellation/arachnoidTrabecula.jsonld new file mode 100644 index 000000000..e44dc900f --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/arachnoidTrabecula.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/arachnoidTrabecula", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the arachnoid mater. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000439)]", + "description": "The arachnoid trabeculae are delicate strands of connective tissue that loosely connect the two innermost layers of the meninges -- the arachnoid mater and the pia mater. They are found within the subarachnoid space where cerebrospinal fluid is also found. Embryologically, the trabeculae are the remnants of the common precursor that forms both the arachnoid and pial layers of the meninges. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000439)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000439#arachnoid-trabecula", + "name": "arachnoid trabecula", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000439", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/arachnoidVillus.jsonld b/instances/latest/terminologies/UBERONParcellation/arachnoidVillus.jsonld new file mode 100644 index 000000000..365ea0324 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/arachnoidVillus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/arachnoidVillus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the arachnoid mater. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0013153)]", + "description": "Small protrusions of the arachnoid mater into vascular sinuses, acting as one-way pressure-sensitive valves. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0013153)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0013153#arachnoid-villus", + "name": "arachnoid villus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0013153", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/arborVitae.jsonld b/instances/latest/terminologies/UBERONParcellation/arborVitae.jsonld new file mode 100644 index 000000000..83cda137e --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/arborVitae.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/arborVitae", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter of cerebellum. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0027333)]", + "description": "The white matter contained within the cerebellum, lying deep to the granule cell layer in the cerebellar cortex, excluding the parts of the cerebellar peduncles that extend outside of the cerebellum. The deep cerebellar nuclei are embedded within the arbor vitae. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0027333)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027333#arbor-vitae", + "name": "arbor vitae", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027333", + "synonym": [ + "arbor vitae", + "arbor vitae" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/arcopallium.jsonld b/instances/latest/terminologies/UBERONParcellation/arcopallium.jsonld index eebfb174f..c7b9d0a46 100644 --- a/instances/latest/terminologies/UBERONParcellation/arcopallium.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/arcopallium.jsonld @@ -4,18 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/arcopallium", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Arcopallium' is a regional part of brain. It is part of the pallium.", - "description": "A pallial region found in avias that partially overlap regions homologous to the amygdala of mammals.", + "definition": "Is a regional part of brain. Is part of the pallium. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007350) ('is_a' and 'relationship')]", + "description": "A pallial region found in avias that partially overlap regions homologous to the amygdala of mammals. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007350)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100877", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007350#arcopallium", "name": "arcopallium", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007350", - "synonym": [ - "A", - "amygdaloid complex", - "arched pallium", - "archistriatum", - "Arcopallium", - "epistriatum" - ] + "synonym": null } + diff --git a/instances/latest/terminologies/UBERONParcellation/arcuateFasciculus.jsonld b/instances/latest/terminologies/UBERONParcellation/arcuateFasciculus.jsonld index 33d9d5f19..2ed88bf52 100644 --- a/instances/latest/terminologies/UBERONParcellation/arcuateFasciculus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/arcuateFasciculus.jsonld @@ -4,18 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/arcuateFasciculus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "", - "description": "The 'arcuate fasciculus' is a white matter fibre bundle connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain. It is is a cerebral nerve fasciculus.", + "definition": "Is a cerebral nerve fasciculus. Is part of the superior longitudinal fasciculus and the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035937) ('is_a' and 'relationship')]", + "description": "The arcuate fasciculus (Latin, curved bundle) is the neural pathway connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain and is now considered as part of the Superior longitudinal fasciculus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035937)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731407", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035937#arcuate-fasciculus", "name": "arcuate fasciculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035937", "synonym": [ - "AF", "arcuate fascicle", - "ARF", "cerebral arcuate fasciculus", - "fasciculus arcuatus", - "fibrae arcuatae cerebri" + "fasciculus arcuatus" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/asteriscus.jsonld b/instances/latest/terminologies/UBERONParcellation/asteriscus.jsonld new file mode 100644 index 000000000..6643fb4e2 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/asteriscus.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/asteriscus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an otolith. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000315)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000315#asteriscus", + "name": "asteriscus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000315", + "synonym": [ + "lagenar otolith", + "lagenolith" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/auditoryRadiation.jsonld b/instances/latest/terminologies/UBERONParcellation/auditoryRadiation.jsonld new file mode 100644 index 000000000..a7d39d8d5 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/auditoryRadiation.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/auditoryRadiation", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a radiation of cerebral hemisphere. Is part of the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022262) ('is_a' and 'relationship')]", + "description": "The acoustic radiations or auditory radiations are structures found in the brain, in the ventral cochlear pathway, a part of the auditory system. Lesions to the auditory radiations could be a cause of cortical deafness. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022262)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022262#auditory-radiation", + "name": "auditory radiation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022262", + "synonym": [ + "acoustic radiation", + "geniculotemporal radiation", + "geniculotemporal tract", + "radiatio acustica" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/basalCistern.jsonld b/instances/latest/terminologies/UBERONParcellation/basalCistern.jsonld new file mode 100644 index 000000000..126c02f56 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/basalCistern.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basalCistern", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a subarachnoid cistern. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004047)]", + "description": "The enclosed space where the arachnoid membrane stretches between the two temporal lobes and encloses the cerebral peduncles including the structures contained in the interpeduncular fossa. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004047)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004047#basal-cistern", + "name": "basal cistern", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004047", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/basalForebrain.jsonld b/instances/latest/terminologies/UBERONParcellation/basalForebrain.jsonld index 3685b7dc7..c543fc3a4 100644 --- a/instances/latest/terminologies/UBERONParcellation/basalForebrain.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/basalForebrain.jsonld @@ -4,14 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basalForebrain", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Basal forebrain' is a regional part of brain. It is part of the forebrain.", - "description": "A region of the brain consisting of ventral and rostral subcortical regions of the telencephalon, including among others, the basal ganglia, septal nuclei, amygdala, ventral pallidum, substantia innominata, and basal nucleus of Meynert.", + "definition": "Is a regional part of brain. Is part of the forebrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002743) ('is_a' and 'relationship')]", + "description": "A region of the brain consisting of ventral and rostral subcortical regions of the telencephalon, including among others, the basal ganglia, septal nuclei, amygdala, ventral pallidum, substantia innominata, and basal nucleus of Meynert. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002743)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101101", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002743#basal-forebrain-1", "name": "basal forebrain", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002743", - "synonym": [ - "basal forebrain area", - "pars basalis telencephali" - ] + "synonym": null } + diff --git a/instances/latest/terminologies/UBERONParcellation/basalNuclearComplex.jsonld b/instances/latest/terminologies/UBERONParcellation/basalNuclearComplex.jsonld index 6a045868c..cb9c7728f 100644 --- a/instances/latest/terminologies/UBERONParcellation/basalNuclearComplex.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/basalNuclearComplex.jsonld @@ -4,18 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basalNuclearComplex", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Basal nuclear complex' is a nuclear complex of neuraxis and gray matter of forebrain. It is part of the basal forebrain.", - "description": "The deep nuclei of telencephalic origin found in the basal region of the forebrain, The deep nuclei found in the basal forebrain.Large subcortical nuclear masses derived from the telencephalon and located in the basal regions of the cerebral hemispheres. (MeSH definition of Basal Ganglia in UMLS).", + "definition": "Is a nuclear complex of neuraxis and gray matter of forebrain. Is part of the basal forebrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006098) ('is_a' and 'relationship')]", + "description": "The deep nuclei of telencephalic origin found in the basal region of the forebrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006098)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101108", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006098#basal-nuclear-complex-1", "name": "basal nuclear complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006098", "synonym": [ - "basal ganglia", - "basal ganglia (anatomic)", "basal nuclei", - "basal nuclei of the forebrain", - "corpus striatum (Savel'ev)", - "ganglia basales" + "basal nuclei of the forebrain" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/basalPartOfPons.jsonld b/instances/latest/terminologies/UBERONParcellation/basalPartOfPons.jsonld index 17b294c76..cb55df0ee 100644 --- a/instances/latest/terminologies/UBERONParcellation/basalPartOfPons.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/basalPartOfPons.jsonld @@ -4,24 +4,20 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basalPartOfPons", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Basal part of pons' is a regional part of brain. It is part of the pons.", - "description": "Ventral subdivision of the pons which consists of the massive pontine pertuberance on pontine ventral surface.", + "definition": "Is a regional part of brain. Is part of the pons. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002567) ('is_a' and 'relationship')]", + "description": "Ventral subdivision of the pons which consists of the massive pontine pertuberance on pontine ventral surface. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002567)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101110", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002567#basal-part-of-pons-1", "name": "basal part of pons", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002567", "synonym": [ - "basal part of the pons", "basal portion of pons", "base of pons", "basilar part of pons", - "basilar pons", - "basis pontis", - "pars anterior pontis", "pars basilaris pontis", - "pars ventralis pontis", "pons proper", "ventral pons", "ventral portion of pons" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/basalPlateMedullaOblongata.jsonld b/instances/latest/terminologies/UBERONParcellation/basalPlateMedullaOblongata.jsonld new file mode 100644 index 000000000..4b645456a --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/basalPlateMedullaOblongata.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basalPlateMedullaOblongata", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a neural tube basal plate. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005240)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005240#basal-plate-medulla-oblongata", + "name": "basal plate medulla oblongata", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005240", + "synonym": [ + "medulla oblongata basal plate" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/basisPontis.jsonld b/instances/latest/terminologies/UBERONParcellation/basisPontis.jsonld new file mode 100644 index 000000000..eaec1a4f1 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/basisPontis.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basisPontis", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the pons. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0024110) ('is_a' and 'relationship')]", + "description": "The basis pontis is the anterior portion of the pons. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0024110)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024110#basis-pontis", + "name": "basis pontis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024110", + "synonym": [ + "basis pontis", + "basis pontis" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld b/instances/latest/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld index 5dc0e25ef..35828d853 100644 --- a/instances/latest/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basolateralAmygdaloidNuclearComplex", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Basolateral amygdaloid nuclear complex' is a cerebral hemisphere gray matter and nuclear complex of neuraxis. It is part of the amygdala.", - "description": "A set of amygdalar nuclei comprising the lateral nucleus (LA), the basal nucleus (BA), and the accessory basal nuclei (ABN). These nuclei are bordered laterally by the external capsule and medially by the central amygdalar nucleus as well as the amygdalohippocampal area. This definition refers to the rat Basolateral nuclear complex.", + "definition": "Is a cerebral hemisphere gray matter and nuclear complex of neuraxis. Is part of the amygdala. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006107) ('is_a' and 'relationship')]", + "description": "A set of amygdalar nuclei comprising the lateral nucleus (LA), the basal nucleus (BA), and the accessory basal nuclei (ABN). These nuclei are bordered laterally by the external capsule and medially by the central amygdalar nucleus as well as the amygdalohippocampal area. This definition refers to the rat Basolateral nuclear complex. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006107)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101128", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006107#basolateral-nuclear-complex", "name": "basolateral amygdaloid nuclear complex", @@ -13,17 +13,18 @@ "synonym": [ "amygdalar basolateral nucleus", "amygdaloid basolateral complex", + "amygdaloid basolateral complex", "basolateral amygdala", "basolateral amygdaloid nuclear complex", - "basolateral complex", "basolateral nuclear complex", "basolateral nuclear group", + "basolateral nuclear group", "basolateral nuclei of amygdala", "basolateral subdivision of amygdala", "BL", - "deep nuclei", "pars basolateralis (Corpus amygdaloideum)", - "set of basolateral nuclei of amygdala", + "vicarious cortex", "vicarious cortex" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/bodyOfCorpusCallosum.jsonld b/instances/latest/terminologies/UBERONParcellation/bodyOfCorpusCallosum.jsonld index 2899ab95d..5f66b1c42 100644 --- a/instances/latest/terminologies/UBERONParcellation/bodyOfCorpusCallosum.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/bodyOfCorpusCallosum.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/bodyOfCorpusCallosum", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "The 'body of corpus callosum' is a white matter structure. It is part of the corpus callosum.", - "description": "", + "definition": "Is a cerebral hemisphere white matter. Is part of the corpus callosum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015510) ('is_a' and 'relationship')]", + "description": "An area within the corpus callosum, a white matter structure within the cleft that separates the left and right cerebral hemispheres in the mammalian brain, between the genu (anterior region) and the splenium (posterior region). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015510)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728551", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015510#body-of-corpus-callosum", "name": "body of corpus callosum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015510", "synonym": [ "corpus callosum body", - "corpus callosum corpus", - "corpus callosum truncus", - "trunculus corporis callosi", - "truncus corporis callosi", - "truncus corpus callosi", - "trunk of corpus callosum" + "truncus corporis callosi" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/bodyOfFornix.jsonld b/instances/latest/terminologies/UBERONParcellation/bodyOfFornix.jsonld index c76d8a6e4..56bfb835e 100644 --- a/instances/latest/terminologies/UBERONParcellation/bodyOfFornix.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/bodyOfFornix.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/bodyOfFornix", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Body of fornix' is a central nervous system cell part cluster. It is part of the fornix of brain.", - "description": "Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum", + "definition": "Is a central nervous system cell part cluster. Is part of the fornix of brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004680) ('is_a' and 'relationship')]", + "description": "Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004680)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101373", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004680#body-of-fornix-1", "name": "body of fornix", @@ -16,7 +16,7 @@ "column of fornix", "columna fornicis", "columns of fornix", - "columns of the fornix", "fornix body" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/brachiumOfInferiorColliculus.jsonld b/instances/latest/terminologies/UBERONParcellation/brachiumOfInferiorColliculus.jsonld index 557f14d28..2fe7d02d0 100644 --- a/instances/latest/terminologies/UBERONParcellation/brachiumOfInferiorColliculus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/brachiumOfInferiorColliculus.jsonld @@ -4,23 +4,19 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brachiumOfInferiorColliculus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brachium of inferior colliculus' is a neuron projection bundle and central nervous system cell part cluster. It is part of the inferior colliculus and white matter.", - "description": "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [WP,unvetted].", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the inferior colliculus and the white matter. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003025) ('is_a' and 'relationship')]", + "description": "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003025)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101409", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003025#brachium-of-inferior-colliculus-1", "name": "brachium of inferior colliculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003025", "synonym": [ - "brachium colliculi caudalis", - "brachium colliculi inferioris", "brachium of medial geniculate", - "brachium of the inferior colliculus", - "brachium quadrigeminum inferius", "inferior brachium", "inferior collicular brachium", "inferior colliculus brachium", "inferior quadrigeminal brachium", - "nucleus of the brachium of the inferior colliculus", "peduncle of inferior colliculus" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld b/instances/latest/terminologies/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld index b0296e163..b51fecab1 100644 --- a/instances/latest/terminologies/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld @@ -4,21 +4,17 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brachiumOfSuperiorColliculus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brachium of superior colliculus' is a neuron projection bundle and central nervous system cell part cluster. It is part of the white matter of superior colliculus.", - "description": "Bundle of fibers that passes over the medial geniculate nucleus (in humans) to reach the superior colliculus. Contains afferents from the retina.", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the white matter of superior colliculus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002580) ('is_a' and 'relationship')]", + "description": "Bundle of fibers that passes over the medial geniculate nucleus (in humans) to reach the superior colliculus. Contains afferents from the retina. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002580)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101410", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002580#brachium-of-superior-colliculus-1", "name": "brachium of superior colliculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002580", "synonym": [ - "brachium colliculi cranialis", - "brachium colliculi rostralis", - "brachium colliculi superioris", - "brachium of the superior colliculus", - "brachium quadrigeminum superius", "superior brachium", "superior collicular brachium", "superior colliculus brachium", "superior quadrigeminal brachium" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/brain.jsonld b/instances/latest/terminologies/UBERONParcellation/brain.jsonld new file mode 100644 index 000000000..3831687b6 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/brain.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brain", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the central nervous system. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000955)]", + "description": "The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000955)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000955#brain-1", + "name": "brain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000955", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/brainEndothelium.jsonld b/instances/latest/terminologies/UBERONParcellation/brainEndothelium.jsonld index bc23e0723..512dc4654 100644 --- a/instances/latest/terminologies/UBERONParcellation/brainEndothelium.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/brainEndothelium.jsonld @@ -4,11 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brainEndothelium", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brain endothelium' is part of the brain.", - "description": "Vascular endothelium found in blood vessels of the blood-brain-barrier.", + "definition": "Is part of the brain. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0013694)]", + "description": "Vascular endothelium found in blood vessels of the blood-brain-barrier. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0013694)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0733041", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0013694#brain-endothelium", "name": "brain endothelium", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0013694", "synonym": null } + diff --git a/instances/latest/terminologies/UBERONParcellation/brainEpendyma.jsonld b/instances/latest/terminologies/UBERONParcellation/brainEpendyma.jsonld index bb1d9433f..f5c1539eb 100644 --- a/instances/latest/terminologies/UBERONParcellation/brainEpendyma.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/brainEpendyma.jsonld @@ -4,11 +4,14 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brainEpendyma", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brain ependyma' is an ependyma. It is part of the brain ventricle.", - "description": "The ependymal cell layer that lines the brain ventricles.", + "definition": "Is an ependyma. Is part of the brain ventricle. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005357) ('is_a' and 'relationship')]", + "description": "The ependymal cell layer that lines the brain ventricles. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005357)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0730349", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005357#brain-ependyma", "name": "brain ependyma", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005357", - "synonym": null + "synonym": [ + "ependyma of ventricular system of brain" + ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/brainGrayMatter.jsonld b/instances/latest/terminologies/UBERONParcellation/brainGrayMatter.jsonld index 134a5a708..7b2ba1e4c 100644 --- a/instances/latest/terminologies/UBERONParcellation/brainGrayMatter.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/brainGrayMatter.jsonld @@ -4,11 +4,18 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brainGrayMatter", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brain gray matter' is a gray matter. It is part of the brain.", - "description": null, + "definition": "Is a gray matter. Is part of the brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003528) ('is_a' and 'relationship')]", + "description": "A gray matter that is part of a brain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003528)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0725337", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003528#brain-gray-matter", "name": "brain gray matter", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003528", - "synonym": null + "synonym": [ + "brain grey matter", + "brain grey substance", + "gray matter of brain", + "grey matter of brain", + "grey substance of brain" + ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/brainMarginalZone.jsonld b/instances/latest/terminologies/UBERONParcellation/brainMarginalZone.jsonld index cd68712fc..9e151b4bb 100644 --- a/instances/latest/terminologies/UBERONParcellation/brainMarginalZone.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/brainMarginalZone.jsonld @@ -4,11 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brainMarginalZone", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brain marginal zone' is an anatomical entity. It is part of the brain.", - "description": "The part of the future brain that is derived from the mantle layer of the neural tube.", + "definition": "Is an anatomical entity. Is part of the brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010403) ('is_a' and 'relationship')]", + "description": "The part of the future brain that is derived from the mantle layer of the neural tube. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010403)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0734549", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010403#brain-marginal-zone", "name": "brain marginal zone", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010403", "synonym": null } + diff --git a/instances/latest/terminologies/UBERONParcellation/brainMeninx.jsonld b/instances/latest/terminologies/UBERONParcellation/brainMeninx.jsonld index e2ede5a84..66e0df8e3 100644 --- a/instances/latest/terminologies/UBERONParcellation/brainMeninx.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/brainMeninx.jsonld @@ -4,11 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brainMeninx", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brain meninx' is a meninx. It is part of the brain.", - "description": null, + "definition": "Is a meninx. Is part of the brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003547) ('is_a' and 'relationship')]", + "description": "A meninx that is part of a brain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003547)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726394", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003547#brain-meninx", "name": "brain meninx", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003547", - "synonym": null + "synonym": [ + "brain meninges", + "meninges of brain", + "meninx of brain" + ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/brainstem.jsonld b/instances/latest/terminologies/UBERONParcellation/brainstem.jsonld index 5f7cdb9c5..d90a6ddfe 100644 --- a/instances/latest/terminologies/UBERONParcellation/brainstem.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/brainstem.jsonld @@ -4,20 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brainstem", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brainstem' is a regional part of brain.", - "description": "The lower portion of the brain through which the forebrain sends information to, and receives information from, the spinal cord and peripheral nerves. Major functions located in the brainstem include those necessary for survival, e.g., breathing, heart rate, blood pressure, and arousal. (NIDA Media Guide Glossary). Note that the definition of brainstem varies in different nomenclatures, for example, some definitions include the diencephalon.", + "definition": "Is a regional part of brain. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002298)]", + "description": "Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002298)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101444", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002298#brainstem-1", "name": "brainstem", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002298", "synonym": [ - "accessory medullary lamina of pallidum", "brain stem", - "lamella pallidi incompleta", - "lamina medullaris accessoria", - "lamina medullaris incompleta pallidi", - "lamina pallidi incompleta", - "truncus encephali", - "truncus encephalicus" + "truncus encephali" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/bulboidCorpuscle.jsonld b/instances/latest/terminologies/UBERONParcellation/bulboidCorpuscle.jsonld new file mode 100644 index 000000000..6f83c76d1 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/bulboidCorpuscle.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/bulboidCorpuscle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a sensory receptor. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035968)]", + "description": "A receptor in the transitional zone between mucous membrane and skin. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035968)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035968#bulboid-corpuscle", + "name": "bulboid corpuscle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035968", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/calcifiedStructureOfBrain.jsonld b/instances/latest/terminologies/UBERONParcellation/calcifiedStructureOfBrain.jsonld index a2b62ab60..b2af0470b 100644 --- a/instances/latest/terminologies/UBERONParcellation/calcifiedStructureOfBrain.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/calcifiedStructureOfBrain.jsonld @@ -4,7 +4,7 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/calcifiedStructureOfBrain", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Calcified structure of brain' is part of the brain.", + "definition": "Is part of the brain. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0017631)]", "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731107", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0017631#calcified-structure-of-brain", @@ -12,3 +12,4 @@ "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0017631", "synonym": null } + diff --git a/instances/latest/terminologies/UBERONParcellation/canalOfSchlemm.jsonld b/instances/latest/terminologies/UBERONParcellation/canalOfSchlemm.jsonld new file mode 100644 index 000000000..ae5326938 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/canalOfSchlemm.jsonld @@ -0,0 +1,21 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/canalOfSchlemm", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the cavernous sinus. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004029)]", + "description": "The vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004029)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004029#canal-of-schlemm", + "name": "canal of Schlemm", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004029", + "synonym": [ + "Schlemm's canal", + "scleral sinus", + "scleral venous sinus", + "sinus venosus of sclera", + "sinus venosus sclerae" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld b/instances/latest/terminologies/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld index d5bce79dc..ffd98a313 100644 --- a/instances/latest/terminologies/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld @@ -4,15 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/capsuleOfMedialGeniculateBody", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Capsule of medial geniculate body' is a diencephalic white matter. It is part of the medial geniculate body.", - "description": "", + "definition": "Is a diencephalic white matter. Is part of the medial geniculate body. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002627) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101644", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002627#capsule-of-medial-geniculate-body-1", "name": "capsule of medial geniculate body", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002627", "synonym": [ "capsula corporis geniculati medialis", - "capsule of the medial geniculate body", "medial geniculate body capsule" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld index dca2bac56..a7883b829 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Accessory medullary lamina of globus pallidus' is a white matter lamina of cerebral hemisphere. It is part of the medial globus pallidus.", - "description": "Thin bundle of myelinated axons that divides the medial pallidal segment into outer and inner portions (Carpenter, Core Text of Neuroanatomy, 3rd ed., 1985, pg. 303).", + "definition": "Is a white matter lamina of cerebral hemisphere. Is part of the medial globus pallidus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002763) ('is_a' and 'relationship')]", + "description": "Thin bundle of myelinated axons that divides the medial pallidal segment into outer and inner portions (Carpenter, Core Text of Neuroanatomy, 3rd ed., 1985, pg. 303). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002763)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100214", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002763#accessory-medullary-lamina", "name": "accessory medullary lamina of globus pallidus", @@ -15,14 +15,9 @@ "accessory medullary lamina", "accessory medullary lamina of corpus striatum", "accessory medullary lamina of globus pallidus", - "accessory medullary lamina of pallidum", "accessory medullary lamina pallidus", "incomplete medullary lamina of globus pallidus", - "incomplete medullary lamina of the globus pallidus", - "lamella pallidi incompleta", - "lamina medullaris accessoria", - "lamina medullaris accessoria corporis striati", - "lamina medullaris incompleta pallidi", - "lamina pallidi incompleta" + "lamina medullaris accessoria corporis striati" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/adenohypophysis.jsonld b/instances/v3.0/terminologies/UBERONParcellation/adenohypophysis.jsonld index dee839759..ae8376e7d 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/adenohypophysis.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/adenohypophysis.jsonld @@ -4,30 +4,22 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/adenohypophysis", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Adenohypophysis' is part of the pituitary gland.", - "description": "The adenohypophysis, which consists of the anterior and intermediate lobes of the pituitary gland, contains several types of endocrine cells, which secrete systemic hormones such as adenocorticotropic hormone (ACTH), GH, LH/FSH, TSH and prolactin in response to hypothalamus-derived releasing hormones (PMID: 22080957).", + "definition": "Is part of the pituitary gland. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002196)]", + "description": "The glandular, anterior lobe of the pituitary gland. The anterior pituitary regulates several physiological processes including stress, growth, and reproduction. The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002196)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100315", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002196#adenohypophysis-1", "name": "adenohypophysis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002196", "synonym": [ - "AHP", "anterior hypophysis", - "anterior lobe", "anterior lobe (hypophysis)", "anterior lobe of hypophysis", "anterior lobe of pituitary", "anterior lobe of pituitary gland", - "anterior lobe of the pituitary", "anterior pituitary", - "anterior pituitary gland", - "cranial lobe", - "lobus anterior", "lobus anterior (glandula pituitaria)", "lobus anterior hypophysis", - "pituitary anterior lobe", - "pituitary gland", - "pituitary glandanterior lobe", - "rostral lobe" + "pituitary gland, anterior lobe" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/alarPlateMidbrain.jsonld b/instances/v3.0/terminologies/UBERONParcellation/alarPlateMidbrain.jsonld new file mode 100644 index 000000000..6c89d4736 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/alarPlateMidbrain.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/alarPlateMidbrain", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is part of the midbrain. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2001357)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2001357#alar-plate-midbrain", + "name": "alar plate midbrain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2001357", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/amiculum.jsonld b/instances/v3.0/terminologies/UBERONParcellation/amiculum.jsonld new file mode 100644 index 000000000..7b36e14e6 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/amiculum.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/amiculum", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a white matter. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035939)]", + "description": "A dense surrounding coat of white fibers, as the sheath of the inferior olive and of the dentate nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035939)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035939#amiculum", + "name": "amiculum", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035939", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/amiculumOfInferiorOlive.jsonld b/instances/v3.0/terminologies/UBERONParcellation/amiculumOfInferiorOlive.jsonld new file mode 100644 index 000000000..4b84c07ff --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/amiculumOfInferiorOlive.jsonld @@ -0,0 +1,21 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/amiculumOfInferiorOlive", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a white matter of myelencephalon and amiculum. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035938)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035938#amiculum-of-inferior-olive", + "name": "amiculum of inferior olive", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035938", + "synonym": [ + "amiculum of olive", + "amiculum of the olive", + "amiculum olivae", + "amiculum olivare", + "inferior olive amiculum" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/ampullaCaudalis.jsonld b/instances/v3.0/terminologies/UBERONParcellation/ampullaCaudalis.jsonld new file mode 100644 index 000000000..8879c232e --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/ampullaCaudalis.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ampullaCaudalis", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the central canal of spinal cord. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0011360) ('is_a' and 'relationship')]", + "description": "A ventricle-like space at the end of the central canal. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0011360)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0011360#ampulla-caudalis", + "name": "ampulla caudalis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0011360", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/amygdala.jsonld b/instances/v3.0/terminologies/UBERONParcellation/amygdala.jsonld index 09e9367b3..a93d69985 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/amygdala.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/amygdala.jsonld @@ -4,24 +4,18 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/amygdala", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Amygdala' is a basal ganglion and cerebral hemisphere gray matter. It is part of the limbic system and temporal lobe.", - "description": "Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM).", + "definition": "Is a basal ganglion and cerebral hemisphere gray matter. Is part of the limbic system and the temporal lobe. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001876) ('is_a' and 'relationship')]", + "description": "Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001876)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100573", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001876#amygdala-1", "name": "amygdala", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001876", "synonym": [ - "amygdaloid area", "amygdaloid body", "amygdaloid complex", "amygdaloid nuclear complex", - "amygdaloid nuclear group", "amygdaloid nuclear groups", - "amygdaloid nucleus", - "archistriatum", - "Archistriatum", - "corpus amygdalae", - "corpus amygdaloideum", - "nucleus amygdalae" + "archistriatum" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld b/instances/v3.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld new file mode 100644 index 000000000..b401cae01 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ansaCervicalis", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a nerve. Is part of the cervical nerve plexus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005430) ('is_a' and 'relationship')]", + "description": "A loop of nerves that are part of the cervical plexus that lies superficial to the internal jugular vein in the carotid sheath. Branches from the ansa cervicalis innervate three of the four infrahyoid muscles, including the sternohyoid muscle, the sternothyroid muscle, and the omohyoid muscle. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005430)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005430#ansa-cervicalis", + "name": "ansa cervicalis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005430", + "synonym": [ + "ansa cervicalis" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/ansaLenticularis.jsonld b/instances/v3.0/terminologies/UBERONParcellation/ansaLenticularis.jsonld index e07acb4be..5d6c76919 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/ansaLenticularis.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/ansaLenticularis.jsonld @@ -4,16 +4,16 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ansaLenticularis", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ansa lenticularis' is a diencephalic white matter. It is part of the ventral thalamus.", - "description": "White matter bundle containing part of the projection of the globus pallidus to the thalamus, forming a compact, conspicuous bundle running beneath the internal capsule and hooking around its medial edge (Nolte, The Human Brain, 6th ed., 2009, pg 659)", + "definition": "Is a diencephalic white matter. Is part of the ventral thalamus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009641) ('is_a' and 'relationship')]", + "description": "The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009641)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100654", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009641#ansa-lenticularis-1", "name": "ansa lenticularis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009641", "synonym": [ - "al", "ansa lenticularis in thalamo", "ansa lenticularis in thalamus", "ventral peduncle of lateral forebrain bundle" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/ansaPeduncularis.jsonld b/instances/v3.0/terminologies/UBERONParcellation/ansaPeduncularis.jsonld new file mode 100644 index 000000000..f733d291f --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/ansaPeduncularis.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ansaPeduncularis", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the ventral thalamus and the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034896) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034896#ansa-peduncularis", + "name": "ansa peduncularis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034896", + "synonym": [ + "ansa peduncularis in thalamo", + "ansa peduncularis in thalamus", + "peduncular loop" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/anteriorColumnOfFornix.jsonld b/instances/v3.0/terminologies/UBERONParcellation/anteriorColumnOfFornix.jsonld index 81acdbcb1..732eca391 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/anteriorColumnOfFornix.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/anteriorColumnOfFornix.jsonld @@ -4,18 +4,17 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorColumnOfFornix", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior column of fornix' is a cerebral hemisphere white matter. It is part of the fornix of brain.", - "description": "", + "definition": "Is a cerebral hemisphere white matter. Is part of the fornix of brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002940) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100691", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002940#anterior-column-of-fornix-1", "name": "anterior column of fornix", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002940", "synonym": [ - "anterior column of fornix", "anterior crus of fornix", "anterior pillar of fornix", "columna fornicis anterior", - "crus anterius", - "fornix" + "fornix, crus anterius" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/anteriorCoronaRadiata.jsonld b/instances/v3.0/terminologies/UBERONParcellation/anteriorCoronaRadiata.jsonld new file mode 100644 index 000000000..25525965f --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/anteriorCoronaRadiata.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorCoronaRadiata", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the corona radiata of neuraxis. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022425) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022425#anterior-corona-radiata", + "name": "anterior corona radiata", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022425", + "synonym": [ + "anterior portion of corona radiata" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/anteriorHypothalamicRegion.jsonld b/instances/v3.0/terminologies/UBERONParcellation/anteriorHypothalamicRegion.jsonld index 3a41530a9..9f32bd756 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/anteriorHypothalamicRegion.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/anteriorHypothalamicRegion.jsonld @@ -4,17 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorHypothalamicRegion", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior hypothalamic region' is a regional part of brain. It is part of the hypothalamus.", - "description": "", + "definition": "Is a regional part of brain. Is part of the hypothalamus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002550) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100710", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002550#anterior-hypothalamic-region-1", "name": "anterior hypothalamic region", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002550", "synonym": [ - "AHR", "anterior hypothalamic area", - "anterior hypothalamus", - "chiasmal zone", - "preoptic division" + "chiasmal zone" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld b/instances/v3.0/terminologies/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld index 4da5da205..7de0464f2 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld @@ -4,17 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorLimbOfInternalCapsule", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior limb of internal capsule' is a limb of internal capsule of telencephalon.", - "description": "Portion of internal capsule lying between the lenticular nucleus and the head of the caudate nucleus.", + "definition": "Is a limb of internal capsule of telencephalon. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014526)]", + "description": "Portion of internal capsule lying between the lenticular nucleus and the head of the caudate nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014526)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100712", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014526#anterior-limb-of-internal-capsule-1", "name": "anterior limb of internal capsule", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014526", "synonym": [ - "anterior internal capsule", - "anterior limb", - "capsula interna", - "crus anterius capsulae internae", - "pars anterior" + "capsula interna, pars anterior", + "crus anterius capsulae internae" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/anteriorMacula.jsonld b/instances/v3.0/terminologies/UBERONParcellation/anteriorMacula.jsonld new file mode 100644 index 000000000..6ac50d5a2 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/anteriorMacula.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorMacula", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is part of the otolith organ. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", + "description": "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000168#anterior-macula", + "name": "anterior macula", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000168", + "synonym": [ + "am" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/anteriorMedianEminence.jsonld b/instances/v3.0/terminologies/UBERONParcellation/anteriorMedianEminence.jsonld index 8bcb4aad3..f2699d780 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/anteriorMedianEminence.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/anteriorMedianEminence.jsonld @@ -4,14 +4,12 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorMedianEminence", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior median eminence' is a regional part of brain. It is part of the median eminence of neurohypophysis.", - "description": "", + "definition": "Is a regional part of brain. Is part of the median eminence of neurohypophysis. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002648) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100714", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002648#anterior-median-eminence-1", "name": "anterior median eminence", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002648", - "synonym": [ - "AME", - "eminentia mediana anterior" - ] + "synonym": null } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld b/instances/v3.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld index 2f60b8e4b..dbb9131b5 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld @@ -4,33 +4,24 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorNuclearGroup", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior nuclear group' is a nucleus of dorsal thalamus.", - "description": "Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26)", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002788)]", + "description": "Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002788)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100718", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002788#anterior-nuclear-group-1", "name": "anterior nuclear group", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002788", "synonym": [ - "ANG", - "anterior group of thalamus", - "anterior group of the dorsal thalamus", "anterior nuclear group", "anterior nuclear group of thalamus", - "anterior nuclear group of the thalamus", "anterior nuclei of thalamus", "anterior nucleus of thalamus", "anterior thalamic group", - "anterior thalamic nuclear group", "anterior thalamic nuclei", - "anterior thalamic nucleus", "anterior thalamus", - "dorsal thalamus anterior division", "nuclei anterior thalami", "nuclei anteriores (thalami)", "nuclei anteriores thalami", - "nuclei thalamicus anterior", - "nucleus anterior thalami", - "nucleus thalamicus anterior", - "rostral thalamic nucleus" + "nuclei thalamicus anterior" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/anteriorPerforatedSubstance.jsonld b/instances/v3.0/terminologies/UBERONParcellation/anteriorPerforatedSubstance.jsonld index 69df92f98..b8b366227 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/anteriorPerforatedSubstance.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/anteriorPerforatedSubstance.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorPerforatedSubstance", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior perforated substance' is a regional part of brain. It is part of the telencephalon.", - "description": "Regional part of telencephalon lying on the basal surface and bounded by the olfactory trigone rostrally, the diagonal band medially and caudally and the prepiriform cortex laterally. It is characterized by many perforations caused by small blood vessels entering the gray matter (Meyer et al., J. Comp. Neurol 284: 405, 1989).", + "definition": "Is a regional part of brain. Is part of the telencephalon. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0018141) ('is_a' and 'relationship')]", + "description": "Regional part of telencephalon lying on the basal surface and bounded by the olfactory trigone rostrally, the diagonal band medially and caudally and the prepiriform cortex laterally. It is characterized by many perforations caused by small blood vessels entering the gray matter (Meyer et al., J. Comp. Neurol 284: 405, 1989). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0018141)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100738", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0018141#anterior-perforated-substance-1", "name": "anterior perforated substance", @@ -13,14 +13,8 @@ "synonym": [ "anterior perforated area", "anterior perforated space", - "area olfactoria (Mai)", - "eminentia parolfactoria", - "olfactory area (Carpenter)", - "olfactory area (Mai)", - "olfactory tubercle", - "olfactory tubercle (Ganser)", - "rostral perforated substance", - "substantia perforata anterior", - "tuber olfactorium" + "olfactory area (mai)", + "substantia perforata anterior" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/anteriorThalamicPeduncle.jsonld b/instances/v3.0/terminologies/UBERONParcellation/anteriorThalamicPeduncle.jsonld new file mode 100644 index 000000000..b3a335fae --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/anteriorThalamicPeduncle.jsonld @@ -0,0 +1,21 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorThalamicPeduncle", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a white matter of telencephalon and peduncle of thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022237)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022237#anterior-thalamic-peduncle", + "name": "anterior thalamic peduncle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022237", + "synonym": [ + "anterior peduncle", + "frontal peduncle", + "frontal thalamic peduncle", + "pedunculus rostralis thalami", + "rostral peduncle of thalamus" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld b/instances/v3.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld index 6243d5d0b..ee7b5c279 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld @@ -4,16 +4,16 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorThalamicRadiation", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The 'anterior thalamic radiation' is a white matter fibre bundle. It is part of the thalamic complex.", - "description": "", + "definition": "Is a radiation of cerebral hemisphere and radiation of thalamus. Is part of the anterior limb of internal capsule. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034746) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728673", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034746#anterior-thalamic-radiation", "name": "anterior thalamic radiation", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034746", "synonym": [ "anterior radiation of thalamus", - "athf", - "radiatio thalami anterior", - "radiationes thalamicae anteriores" + "anterior thalamic radiation", + "radiatio thalami anterior" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/aorticPlexus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/aorticPlexus.jsonld new file mode 100644 index 000000000..bf5136bad --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/aorticPlexus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/aorticPlexus", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an autonomic nerve plexus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035772)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035772#aortic-plexus", + "name": "aortic plexus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035772", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/arachnoidTrabecula.jsonld b/instances/v3.0/terminologies/UBERONParcellation/arachnoidTrabecula.jsonld new file mode 100644 index 000000000..23e1f8a09 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/arachnoidTrabecula.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/arachnoidTrabecula", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is part of the arachnoid mater. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000439)]", + "description": "The arachnoid trabeculae are delicate strands of connective tissue that loosely connect the two innermost layers of the meninges -- the arachnoid mater and the pia mater. They are found within the subarachnoid space where cerebrospinal fluid is also found. Embryologically, the trabeculae are the remnants of the common precursor that forms both the arachnoid and pial layers of the meninges. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000439)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000439#arachnoid-trabecula", + "name": "arachnoid trabecula", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000439", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/arachnoidVillus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/arachnoidVillus.jsonld new file mode 100644 index 000000000..b128a9af5 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/arachnoidVillus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/arachnoidVillus", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is part of the arachnoid mater. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0013153)]", + "description": "Small protrusions of the arachnoid mater into vascular sinuses, acting as one-way pressure-sensitive valves. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0013153)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0013153#arachnoid-villus", + "name": "arachnoid villus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0013153", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/arborVitae.jsonld b/instances/v3.0/terminologies/UBERONParcellation/arborVitae.jsonld new file mode 100644 index 000000000..25cbe06a0 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/arborVitae.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/arborVitae", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a white matter of cerebellum. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0027333)]", + "description": "The white matter contained within the cerebellum, lying deep to the granule cell layer in the cerebellar cortex, excluding the parts of the cerebellar peduncles that extend outside of the cerebellum. The deep cerebellar nuclei are embedded within the arbor vitae. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0027333)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027333#arbor-vitae", + "name": "arbor vitae", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027333", + "synonym": [ + "arbor vitae", + "arbor vitae" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/arcopallium.jsonld b/instances/v3.0/terminologies/UBERONParcellation/arcopallium.jsonld index 48416c8ae..14146aa2d 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/arcopallium.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/arcopallium.jsonld @@ -4,18 +4,12 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/arcopallium", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Arcopallium' is a regional part of brain. It is part of the pallium.", - "description": "A pallial region found in avias that partially overlap regions homologous to the amygdala of mammals.", + "definition": "Is a regional part of brain. Is part of the pallium. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007350) ('is_a' and 'relationship')]", + "description": "A pallial region found in avias that partially overlap regions homologous to the amygdala of mammals. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007350)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100877", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007350#arcopallium", "name": "arcopallium", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007350", - "synonym": [ - "A", - "amygdaloid complex", - "arched pallium", - "archistriatum", - "Arcopallium", - "epistriatum" - ] + "synonym": null } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/arcuateFasciculus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/arcuateFasciculus.jsonld index af9838c3f..7576f3ccb 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/arcuateFasciculus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/arcuateFasciculus.jsonld @@ -4,18 +4,16 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/arcuateFasciculus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "", - "description": "The 'arcuate fasciculus' is a white matter fibre bundle connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain. It is is a cerebral nerve fasciculus.", + "definition": "Is a cerebral nerve fasciculus. Is part of the superior longitudinal fasciculus and the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035937) ('is_a' and 'relationship')]", + "description": "The arcuate fasciculus (Latin, curved bundle) is the neural pathway connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain and is now considered as part of the Superior longitudinal fasciculus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035937)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731407", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035937#arcuate-fasciculus", "name": "arcuate fasciculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035937", "synonym": [ - "AF", "arcuate fascicle", - "ARF", "cerebral arcuate fasciculus", - "fasciculus arcuatus", - "fibrae arcuatae cerebri" + "fasciculus arcuatus" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/asteriscus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/asteriscus.jsonld new file mode 100644 index 000000000..3cbb169d4 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/asteriscus.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/asteriscus", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an otolith. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000315)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000315#asteriscus", + "name": "asteriscus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000315", + "synonym": [ + "lagenar otolith", + "lagenolith" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/auditoryRadiation.jsonld b/instances/v3.0/terminologies/UBERONParcellation/auditoryRadiation.jsonld new file mode 100644 index 000000000..8f97c54a6 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/auditoryRadiation.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/auditoryRadiation", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a radiation of cerebral hemisphere. Is part of the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022262) ('is_a' and 'relationship')]", + "description": "The acoustic radiations or auditory radiations are structures found in the brain, in the ventral cochlear pathway, a part of the auditory system. Lesions to the auditory radiations could be a cause of cortical deafness. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022262)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022262#auditory-radiation", + "name": "auditory radiation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022262", + "synonym": [ + "acoustic radiation", + "geniculotemporal radiation", + "geniculotemporal tract", + "radiatio acustica" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/basalCistern.jsonld b/instances/v3.0/terminologies/UBERONParcellation/basalCistern.jsonld new file mode 100644 index 000000000..d6adc312b --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/basalCistern.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basalCistern", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a subarachnoid cistern. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004047)]", + "description": "The enclosed space where the arachnoid membrane stretches between the two temporal lobes and encloses the cerebral peduncles including the structures contained in the interpeduncular fossa. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004047)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004047#basal-cistern", + "name": "basal cistern", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004047", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/basalForebrain.jsonld b/instances/v3.0/terminologies/UBERONParcellation/basalForebrain.jsonld index dad3401f9..e63b08572 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/basalForebrain.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/basalForebrain.jsonld @@ -4,14 +4,12 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basalForebrain", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Basal forebrain' is a regional part of brain. It is part of the forebrain.", - "description": "A region of the brain consisting of ventral and rostral subcortical regions of the telencephalon, including among others, the basal ganglia, septal nuclei, amygdala, ventral pallidum, substantia innominata, and basal nucleus of Meynert.", + "definition": "Is a regional part of brain. Is part of the forebrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002743) ('is_a' and 'relationship')]", + "description": "A region of the brain consisting of ventral and rostral subcortical regions of the telencephalon, including among others, the basal ganglia, septal nuclei, amygdala, ventral pallidum, substantia innominata, and basal nucleus of Meynert. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002743)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101101", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002743#basal-forebrain-1", "name": "basal forebrain", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002743", - "synonym": [ - "basal forebrain area", - "pars basalis telencephali" - ] + "synonym": null } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/basalNuclearComplex.jsonld b/instances/v3.0/terminologies/UBERONParcellation/basalNuclearComplex.jsonld index dce7c55c6..2d77244c3 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/basalNuclearComplex.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/basalNuclearComplex.jsonld @@ -4,18 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basalNuclearComplex", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Basal nuclear complex' is a nuclear complex of neuraxis and gray matter of forebrain. It is part of the basal forebrain.", - "description": "The deep nuclei of telencephalic origin found in the basal region of the forebrain, The deep nuclei found in the basal forebrain.Large subcortical nuclear masses derived from the telencephalon and located in the basal regions of the cerebral hemispheres. (MeSH definition of Basal Ganglia in UMLS).", + "definition": "Is a nuclear complex of neuraxis and gray matter of forebrain. Is part of the basal forebrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006098) ('is_a' and 'relationship')]", + "description": "The deep nuclei of telencephalic origin found in the basal region of the forebrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006098)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101108", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006098#basal-nuclear-complex-1", "name": "basal nuclear complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006098", "synonym": [ - "basal ganglia", - "basal ganglia (anatomic)", "basal nuclei", - "basal nuclei of the forebrain", - "corpus striatum (Savel'ev)", - "ganglia basales" + "basal nuclei of the forebrain" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/basalPartOfPons.jsonld b/instances/v3.0/terminologies/UBERONParcellation/basalPartOfPons.jsonld index 8eceb9678..6e05c2737 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/basalPartOfPons.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/basalPartOfPons.jsonld @@ -4,24 +4,20 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basalPartOfPons", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Basal part of pons' is a regional part of brain. It is part of the pons.", - "description": "Ventral subdivision of the pons which consists of the massive pontine pertuberance on pontine ventral surface.", + "definition": "Is a regional part of brain. Is part of the pons. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002567) ('is_a' and 'relationship')]", + "description": "Ventral subdivision of the pons which consists of the massive pontine pertuberance on pontine ventral surface. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002567)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101110", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002567#basal-part-of-pons-1", "name": "basal part of pons", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002567", "synonym": [ - "basal part of the pons", "basal portion of pons", "base of pons", "basilar part of pons", - "basilar pons", - "basis pontis", - "pars anterior pontis", "pars basilaris pontis", - "pars ventralis pontis", "pons proper", "ventral pons", "ventral portion of pons" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/basalPlateMedullaOblongata.jsonld b/instances/v3.0/terminologies/UBERONParcellation/basalPlateMedullaOblongata.jsonld new file mode 100644 index 000000000..3860b2e42 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/basalPlateMedullaOblongata.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basalPlateMedullaOblongata", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a neural tube basal plate. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005240)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005240#basal-plate-medulla-oblongata", + "name": "basal plate medulla oblongata", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005240", + "synonym": [ + "medulla oblongata basal plate" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/basisPontis.jsonld b/instances/v3.0/terminologies/UBERONParcellation/basisPontis.jsonld new file mode 100644 index 000000000..5e2e3c83d --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/basisPontis.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basisPontis", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the pons. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0024110) ('is_a' and 'relationship')]", + "description": "The basis pontis is the anterior portion of the pons. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0024110)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024110#basis-pontis", + "name": "basis pontis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024110", + "synonym": [ + "basis pontis", + "basis pontis" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld b/instances/v3.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld index c3ac56c14..47ab386d2 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basolateralAmygdaloidNuclearComplex", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Basolateral amygdaloid nuclear complex' is a cerebral hemisphere gray matter and nuclear complex of neuraxis. It is part of the amygdala.", - "description": "A set of amygdalar nuclei comprising the lateral nucleus (LA), the basal nucleus (BA), and the accessory basal nuclei (ABN). These nuclei are bordered laterally by the external capsule and medially by the central amygdalar nucleus as well as the amygdalohippocampal area. This definition refers to the rat Basolateral nuclear complex.", + "definition": "Is a cerebral hemisphere gray matter and nuclear complex of neuraxis. Is part of the amygdala. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006107) ('is_a' and 'relationship')]", + "description": "A set of amygdalar nuclei comprising the lateral nucleus (LA), the basal nucleus (BA), and the accessory basal nuclei (ABN). These nuclei are bordered laterally by the external capsule and medially by the central amygdalar nucleus as well as the amygdalohippocampal area. This definition refers to the rat Basolateral nuclear complex. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006107)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101128", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006107#basolateral-nuclear-complex", "name": "basolateral amygdaloid nuclear complex", @@ -13,17 +13,18 @@ "synonym": [ "amygdalar basolateral nucleus", "amygdaloid basolateral complex", + "amygdaloid basolateral complex", "basolateral amygdala", "basolateral amygdaloid nuclear complex", - "basolateral complex", "basolateral nuclear complex", "basolateral nuclear group", + "basolateral nuclear group", "basolateral nuclei of amygdala", "basolateral subdivision of amygdala", "BL", - "deep nuclei", "pars basolateralis (Corpus amygdaloideum)", - "set of basolateral nuclei of amygdala", + "vicarious cortex", "vicarious cortex" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/bodyOfCorpusCallosum.jsonld b/instances/v3.0/terminologies/UBERONParcellation/bodyOfCorpusCallosum.jsonld index b2caf5c71..dfd790cf3 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/bodyOfCorpusCallosum.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/bodyOfCorpusCallosum.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/bodyOfCorpusCallosum", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The 'body of corpus callosum' is a white matter structure. It is part of the corpus callosum.", - "description": "", + "definition": "Is a cerebral hemisphere white matter. Is part of the corpus callosum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015510) ('is_a' and 'relationship')]", + "description": "An area within the corpus callosum, a white matter structure within the cleft that separates the left and right cerebral hemispheres in the mammalian brain, between the genu (anterior region) and the splenium (posterior region). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015510)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728551", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015510#body-of-corpus-callosum", "name": "body of corpus callosum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015510", "synonym": [ "corpus callosum body", - "corpus callosum corpus", - "corpus callosum truncus", - "trunculus corporis callosi", - "truncus corporis callosi", - "truncus corpus callosi", - "trunk of corpus callosum" + "truncus corporis callosi" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld b/instances/v3.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld index d930850fa..1e8ea992a 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/bodyOfFornix", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Body of fornix' is a central nervous system cell part cluster. It is part of the fornix of brain.", - "description": "Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum", + "definition": "Is a central nervous system cell part cluster. Is part of the fornix of brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004680) ('is_a' and 'relationship')]", + "description": "Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004680)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101373", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004680#body-of-fornix-1", "name": "body of fornix", @@ -16,7 +16,7 @@ "column of fornix", "columna fornicis", "columns of fornix", - "columns of the fornix", "fornix body" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/brachiumOfInferiorColliculus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/brachiumOfInferiorColliculus.jsonld index f3f54ac76..a6f99e1b1 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/brachiumOfInferiorColliculus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/brachiumOfInferiorColliculus.jsonld @@ -4,23 +4,19 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brachiumOfInferiorColliculus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brachium of inferior colliculus' is a neuron projection bundle and central nervous system cell part cluster. It is part of the inferior colliculus and white matter.", - "description": "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [WP,unvetted].", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the inferior colliculus and the white matter. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003025) ('is_a' and 'relationship')]", + "description": "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003025)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101409", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003025#brachium-of-inferior-colliculus-1", "name": "brachium of inferior colliculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003025", "synonym": [ - "brachium colliculi caudalis", - "brachium colliculi inferioris", "brachium of medial geniculate", - "brachium of the inferior colliculus", - "brachium quadrigeminum inferius", "inferior brachium", "inferior collicular brachium", "inferior colliculus brachium", "inferior quadrigeminal brachium", - "nucleus of the brachium of the inferior colliculus", "peduncle of inferior colliculus" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld index 2046772c1..200f239cf 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld @@ -4,21 +4,17 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brachiumOfSuperiorColliculus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brachium of superior colliculus' is a neuron projection bundle and central nervous system cell part cluster. It is part of the white matter of superior colliculus.", - "description": "Bundle of fibers that passes over the medial geniculate nucleus (in humans) to reach the superior colliculus. Contains afferents from the retina.", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the white matter of superior colliculus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002580) ('is_a' and 'relationship')]", + "description": "Bundle of fibers that passes over the medial geniculate nucleus (in humans) to reach the superior colliculus. Contains afferents from the retina. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002580)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101410", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002580#brachium-of-superior-colliculus-1", "name": "brachium of superior colliculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002580", "synonym": [ - "brachium colliculi cranialis", - "brachium colliculi rostralis", - "brachium colliculi superioris", - "brachium of the superior colliculus", - "brachium quadrigeminum superius", "superior brachium", "superior collicular brachium", "superior colliculus brachium", "superior quadrigeminal brachium" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/brain.jsonld b/instances/v3.0/terminologies/UBERONParcellation/brain.jsonld new file mode 100644 index 000000000..793a88ab6 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/brain.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brain", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is part of the central nervous system. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000955)]", + "description": "The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000955)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000955#brain-1", + "name": "brain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000955", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/brainEndothelium.jsonld b/instances/v3.0/terminologies/UBERONParcellation/brainEndothelium.jsonld index f3426c93b..ca726af6f 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/brainEndothelium.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/brainEndothelium.jsonld @@ -4,11 +4,12 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainEndothelium", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain endothelium' is part of the brain.", - "description": "Vascular endothelium found in blood vessels of the blood-brain-barrier.", + "definition": "Is part of the brain. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0013694)]", + "description": "Vascular endothelium found in blood vessels of the blood-brain-barrier. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0013694)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0733041", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0013694#brain-endothelium", "name": "brain endothelium", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0013694", "synonym": null } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/brainEpendyma.jsonld b/instances/v3.0/terminologies/UBERONParcellation/brainEpendyma.jsonld index 6137348b5..fdc10b0c1 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/brainEpendyma.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/brainEpendyma.jsonld @@ -4,11 +4,14 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainEpendyma", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain ependyma' is an ependyma. It is part of the brain ventricle.", - "description": "The ependymal cell layer that lines the brain ventricles.", + "definition": "Is an ependyma. Is part of the brain ventricle. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005357) ('is_a' and 'relationship')]", + "description": "The ependymal cell layer that lines the brain ventricles. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005357)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0730349", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005357#brain-ependyma", "name": "brain ependyma", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005357", - "synonym": null + "synonym": [ + "ependyma of ventricular system of brain" + ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/brainGrayMatter.jsonld b/instances/v3.0/terminologies/UBERONParcellation/brainGrayMatter.jsonld index f0ee509f3..2460e4377 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/brainGrayMatter.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/brainGrayMatter.jsonld @@ -4,11 +4,18 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainGrayMatter", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain gray matter' is a gray matter. It is part of the brain.", - "description": null, + "definition": "Is a gray matter. Is part of the brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003528) ('is_a' and 'relationship')]", + "description": "A gray matter that is part of a brain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003528)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0725337", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003528#brain-gray-matter", "name": "brain gray matter", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003528", - "synonym": null + "synonym": [ + "brain grey matter", + "brain grey substance", + "gray matter of brain", + "grey matter of brain", + "grey substance of brain" + ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/brainMarginalZone.jsonld b/instances/v3.0/terminologies/UBERONParcellation/brainMarginalZone.jsonld index 886e323cf..3343a8760 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/brainMarginalZone.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/brainMarginalZone.jsonld @@ -4,11 +4,12 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainMarginalZone", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain marginal zone' is an anatomical entity. It is part of the brain.", - "description": "The part of the future brain that is derived from the mantle layer of the neural tube.", + "definition": "Is an anatomical entity. Is part of the brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010403) ('is_a' and 'relationship')]", + "description": "The part of the future brain that is derived from the mantle layer of the neural tube. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010403)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0734549", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010403#brain-marginal-zone", "name": "brain marginal zone", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010403", "synonym": null } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/brainMeninx.jsonld b/instances/v3.0/terminologies/UBERONParcellation/brainMeninx.jsonld index 4822851d7..e31a35702 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/brainMeninx.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/brainMeninx.jsonld @@ -4,11 +4,16 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainMeninx", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain meninx' is a meninx. It is part of the brain.", - "description": null, + "definition": "Is a meninx. Is part of the brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003547) ('is_a' and 'relationship')]", + "description": "A meninx that is part of a brain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003547)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726394", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003547#brain-meninx", "name": "brain meninx", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003547", - "synonym": null + "synonym": [ + "brain meninges", + "meninges of brain", + "meninx of brain" + ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/brainstem.jsonld b/instances/v3.0/terminologies/UBERONParcellation/brainstem.jsonld index de0f8fa85..c189d6bc9 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/brainstem.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/brainstem.jsonld @@ -4,20 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainstem", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brainstem' is a regional part of brain.", - "description": "The lower portion of the brain through which the forebrain sends information to, and receives information from, the spinal cord and peripheral nerves. Major functions located in the brainstem include those necessary for survival, e.g., breathing, heart rate, blood pressure, and arousal. (NIDA Media Guide Glossary). Note that the definition of brainstem varies in different nomenclatures, for example, some definitions include the diencephalon.", + "definition": "Is a regional part of brain. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002298)]", + "description": "Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002298)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101444", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002298#brainstem-1", "name": "brainstem", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002298", "synonym": [ - "accessory medullary lamina of pallidum", "brain stem", - "lamella pallidi incompleta", - "lamina medullaris accessoria", - "lamina medullaris incompleta pallidi", - "lamina pallidi incompleta", - "truncus encephali", - "truncus encephalicus" + "truncus encephali" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/bulboidCorpuscle.jsonld b/instances/v3.0/terminologies/UBERONParcellation/bulboidCorpuscle.jsonld new file mode 100644 index 000000000..77d9f5dff --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/bulboidCorpuscle.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/bulboidCorpuscle", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a sensory receptor. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035968)]", + "description": "A receptor in the transitional zone between mucous membrane and skin. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035968)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035968#bulboid-corpuscle", + "name": "bulboid corpuscle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035968", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/calcifiedStructureOfBrain.jsonld b/instances/v3.0/terminologies/UBERONParcellation/calcifiedStructureOfBrain.jsonld index 0957ade90..451daff42 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/calcifiedStructureOfBrain.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/calcifiedStructureOfBrain.jsonld @@ -4,7 +4,7 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/calcifiedStructureOfBrain", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Calcified structure of brain' is part of the brain.", + "definition": "Is part of the brain. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0017631)]", "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731107", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0017631#calcified-structure-of-brain", @@ -12,3 +12,4 @@ "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0017631", "synonym": null } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/canalOfSchlemm.jsonld b/instances/v3.0/terminologies/UBERONParcellation/canalOfSchlemm.jsonld new file mode 100644 index 000000000..13647e8bb --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/canalOfSchlemm.jsonld @@ -0,0 +1,21 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/canalOfSchlemm", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is part of the cavernous sinus. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004029)]", + "description": "The vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004029)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004029#canal-of-schlemm", + "name": "canal of Schlemm", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004029", + "synonym": [ + "Schlemm's canal", + "scleral sinus", + "scleral venous sinus", + "sinus venosus of sclera", + "sinus venosus sclerae" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld b/instances/v3.0/terminologies/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld index 054f59406..3a26d6d02 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld @@ -4,15 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/capsuleOfMedialGeniculateBody", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Capsule of medial geniculate body' is a diencephalic white matter. It is part of the medial geniculate body.", - "description": "", + "definition": "Is a diencephalic white matter. Is part of the medial geniculate body. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002627) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101644", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002627#capsule-of-medial-geniculate-body-1", "name": "capsule of medial geniculate body", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002627", "synonym": [ "capsula corporis geniculati medialis", - "capsule of the medial geniculate body", "medial geniculate body capsule" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld index 7c4a35bec..7bfd954db 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Accessory medullary lamina of globus pallidus' is a white matter lamina of cerebral hemisphere. It is part of the medial globus pallidus.", - "description": "Thin bundle of myelinated axons that divides the medial pallidal segment into outer and inner portions (Carpenter, Core Text of Neuroanatomy, 3rd ed., 1985, pg. 303).", + "definition": "Is a white matter lamina of cerebral hemisphere. Is part of the medial globus pallidus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002763) ('is_a' and 'relationship')]", + "description": "Thin bundle of myelinated axons that divides the medial pallidal segment into outer and inner portions (Carpenter, Core Text of Neuroanatomy, 3rd ed., 1985, pg. 303). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002763)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100214", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002763#accessory-medullary-lamina", "name": "accessory medullary lamina of globus pallidus", @@ -15,14 +15,9 @@ "accessory medullary lamina", "accessory medullary lamina of corpus striatum", "accessory medullary lamina of globus pallidus", - "accessory medullary lamina of pallidum", "accessory medullary lamina pallidus", "incomplete medullary lamina of globus pallidus", - "incomplete medullary lamina of the globus pallidus", - "lamella pallidi incompleta", - "lamina medullaris accessoria", - "lamina medullaris accessoria corporis striati", - "lamina medullaris incompleta pallidi", - "lamina pallidi incompleta" + "lamina medullaris accessoria corporis striati" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/adenohypophysis.jsonld b/instances/v4.0/terminologies/UBERONParcellation/adenohypophysis.jsonld index 73ceab87d..c44561ba1 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/adenohypophysis.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/adenohypophysis.jsonld @@ -4,30 +4,22 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/adenohypophysis", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Adenohypophysis' is part of the pituitary gland.", - "description": "The adenohypophysis, which consists of the anterior and intermediate lobes of the pituitary gland, contains several types of endocrine cells, which secrete systemic hormones such as adenocorticotropic hormone (ACTH), GH, LH/FSH, TSH and prolactin in response to hypothalamus-derived releasing hormones (PMID: 22080957).", + "definition": "Is part of the pituitary gland. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002196)]", + "description": "The glandular, anterior lobe of the pituitary gland. The anterior pituitary regulates several physiological processes including stress, growth, and reproduction. The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002196)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100315", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002196#adenohypophysis-1", "name": "adenohypophysis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002196", "synonym": [ - "AHP", "anterior hypophysis", - "anterior lobe", "anterior lobe (hypophysis)", "anterior lobe of hypophysis", "anterior lobe of pituitary", "anterior lobe of pituitary gland", - "anterior lobe of the pituitary", "anterior pituitary", - "anterior pituitary gland", - "cranial lobe", - "lobus anterior", "lobus anterior (glandula pituitaria)", "lobus anterior hypophysis", - "pituitary anterior lobe", - "pituitary gland", - "pituitary glandanterior lobe", - "rostral lobe" + "pituitary gland, anterior lobe" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/alarPlateMidbrain.jsonld b/instances/v4.0/terminologies/UBERONParcellation/alarPlateMidbrain.jsonld new file mode 100644 index 000000000..4b3787178 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/alarPlateMidbrain.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/alarPlateMidbrain", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the midbrain. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2001357)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2001357#alar-plate-midbrain", + "name": "alar plate midbrain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2001357", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/amiculum.jsonld b/instances/v4.0/terminologies/UBERONParcellation/amiculum.jsonld new file mode 100644 index 000000000..656087925 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/amiculum.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/amiculum", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035939)]", + "description": "A dense surrounding coat of white fibers, as the sheath of the inferior olive and of the dentate nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035939)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035939#amiculum", + "name": "amiculum", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035939", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/amiculumOfInferiorOlive.jsonld b/instances/v4.0/terminologies/UBERONParcellation/amiculumOfInferiorOlive.jsonld new file mode 100644 index 000000000..b4d8bb2da --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/amiculumOfInferiorOlive.jsonld @@ -0,0 +1,21 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/amiculumOfInferiorOlive", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter of myelencephalon and amiculum. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035938)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035938#amiculum-of-inferior-olive", + "name": "amiculum of inferior olive", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035938", + "synonym": [ + "amiculum of olive", + "amiculum of the olive", + "amiculum olivae", + "amiculum olivare", + "inferior olive amiculum" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/ampullaCaudalis.jsonld b/instances/v4.0/terminologies/UBERONParcellation/ampullaCaudalis.jsonld new file mode 100644 index 000000000..1e191ac77 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/ampullaCaudalis.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/ampullaCaudalis", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the central canal of spinal cord. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0011360) ('is_a' and 'relationship')]", + "description": "A ventricle-like space at the end of the central canal. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0011360)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0011360#ampulla-caudalis", + "name": "ampulla caudalis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0011360", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/amygdala.jsonld b/instances/v4.0/terminologies/UBERONParcellation/amygdala.jsonld index 8c8807a49..81009c7e6 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/amygdala.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/amygdala.jsonld @@ -4,24 +4,18 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/amygdala", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Amygdala' is a basal ganglion and cerebral hemisphere gray matter. It is part of the limbic system and temporal lobe.", - "description": "Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM).", + "definition": "Is a basal ganglion and cerebral hemisphere gray matter. Is part of the limbic system and the temporal lobe. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001876) ('is_a' and 'relationship')]", + "description": "Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001876)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100573", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001876#amygdala-1", "name": "amygdala", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001876", "synonym": [ - "amygdaloid area", "amygdaloid body", "amygdaloid complex", "amygdaloid nuclear complex", - "amygdaloid nuclear group", "amygdaloid nuclear groups", - "amygdaloid nucleus", - "archistriatum", - "Archistriatum", - "corpus amygdalae", - "corpus amygdaloideum", - "nucleus amygdalae" + "archistriatum" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld b/instances/v4.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld new file mode 100644 index 000000000..762217535 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/ansaCervicalis", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nerve. Is part of the cervical nerve plexus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005430) ('is_a' and 'relationship')]", + "description": "A loop of nerves that are part of the cervical plexus that lies superficial to the internal jugular vein in the carotid sheath. Branches from the ansa cervicalis innervate three of the four infrahyoid muscles, including the sternohyoid muscle, the sternothyroid muscle, and the omohyoid muscle. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005430)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005430#ansa-cervicalis", + "name": "ansa cervicalis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005430", + "synonym": [ + "ansa cervicalis" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/ansaLenticularis.jsonld b/instances/v4.0/terminologies/UBERONParcellation/ansaLenticularis.jsonld index f2b4772be..86788e9e0 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/ansaLenticularis.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/ansaLenticularis.jsonld @@ -4,16 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/ansaLenticularis", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Ansa lenticularis' is a diencephalic white matter. It is part of the ventral thalamus.", - "description": "White matter bundle containing part of the projection of the globus pallidus to the thalamus, forming a compact, conspicuous bundle running beneath the internal capsule and hooking around its medial edge (Nolte, The Human Brain, 6th ed., 2009, pg 659)", + "definition": "Is a diencephalic white matter. Is part of the ventral thalamus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009641) ('is_a' and 'relationship')]", + "description": "The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009641)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100654", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009641#ansa-lenticularis-1", "name": "ansa lenticularis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009641", "synonym": [ - "al", "ansa lenticularis in thalamo", "ansa lenticularis in thalamus", "ventral peduncle of lateral forebrain bundle" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/ansaPeduncularis.jsonld b/instances/v4.0/terminologies/UBERONParcellation/ansaPeduncularis.jsonld new file mode 100644 index 000000000..87946b932 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/ansaPeduncularis.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/ansaPeduncularis", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the ventral thalamus and the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034896) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034896#ansa-peduncularis", + "name": "ansa peduncularis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034896", + "synonym": [ + "ansa peduncularis in thalamo", + "ansa peduncularis in thalamus", + "peduncular loop" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/anteriorColumnOfFornix.jsonld b/instances/v4.0/terminologies/UBERONParcellation/anteriorColumnOfFornix.jsonld index 9c131f2cd..5b28a1330 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/anteriorColumnOfFornix.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/anteriorColumnOfFornix.jsonld @@ -4,18 +4,17 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorColumnOfFornix", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Anterior column of fornix' is a cerebral hemisphere white matter. It is part of the fornix of brain.", - "description": "", + "definition": "Is a cerebral hemisphere white matter. Is part of the fornix of brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002940) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100691", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002940#anterior-column-of-fornix-1", "name": "anterior column of fornix", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002940", "synonym": [ - "anterior column of fornix", "anterior crus of fornix", "anterior pillar of fornix", "columna fornicis anterior", - "crus anterius", - "fornix" + "fornix, crus anterius" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/anteriorCoronaRadiata.jsonld b/instances/v4.0/terminologies/UBERONParcellation/anteriorCoronaRadiata.jsonld new file mode 100644 index 000000000..a2a6ce8c4 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/anteriorCoronaRadiata.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorCoronaRadiata", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the corona radiata of neuraxis. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022425) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022425#anterior-corona-radiata", + "name": "anterior corona radiata", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022425", + "synonym": [ + "anterior portion of corona radiata" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/anteriorHypothalamicRegion.jsonld b/instances/v4.0/terminologies/UBERONParcellation/anteriorHypothalamicRegion.jsonld index 0b57ef5da..142217dea 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/anteriorHypothalamicRegion.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/anteriorHypothalamicRegion.jsonld @@ -4,17 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorHypothalamicRegion", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Anterior hypothalamic region' is a regional part of brain. It is part of the hypothalamus.", - "description": "", + "definition": "Is a regional part of brain. Is part of the hypothalamus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002550) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100710", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002550#anterior-hypothalamic-region-1", "name": "anterior hypothalamic region", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002550", "synonym": [ - "AHR", "anterior hypothalamic area", - "anterior hypothalamus", - "chiasmal zone", - "preoptic division" + "chiasmal zone" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld b/instances/v4.0/terminologies/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld index 8888dfb74..807403631 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld @@ -4,17 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorLimbOfInternalCapsule", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Anterior limb of internal capsule' is a limb of internal capsule of telencephalon.", - "description": "Portion of internal capsule lying between the lenticular nucleus and the head of the caudate nucleus.", + "definition": "Is a limb of internal capsule of telencephalon. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014526)]", + "description": "Portion of internal capsule lying between the lenticular nucleus and the head of the caudate nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014526)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100712", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014526#anterior-limb-of-internal-capsule-1", "name": "anterior limb of internal capsule", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014526", "synonym": [ - "anterior internal capsule", - "anterior limb", - "capsula interna", - "crus anterius capsulae internae", - "pars anterior" + "capsula interna, pars anterior", + "crus anterius capsulae internae" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/anteriorMacula.jsonld b/instances/v4.0/terminologies/UBERONParcellation/anteriorMacula.jsonld new file mode 100644 index 000000000..855b8bdc5 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/anteriorMacula.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorMacula", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the otolith organ. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", + "description": "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000168#anterior-macula", + "name": "anterior macula", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000168", + "synonym": [ + "am" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/anteriorMedianEminence.jsonld b/instances/v4.0/terminologies/UBERONParcellation/anteriorMedianEminence.jsonld index 8c73e14f4..cfb4410d7 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/anteriorMedianEminence.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/anteriorMedianEminence.jsonld @@ -4,14 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorMedianEminence", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Anterior median eminence' is a regional part of brain. It is part of the median eminence of neurohypophysis.", - "description": "", + "definition": "Is a regional part of brain. Is part of the median eminence of neurohypophysis. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002648) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100714", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002648#anterior-median-eminence-1", "name": "anterior median eminence", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002648", - "synonym": [ - "AME", - "eminentia mediana anterior" - ] + "synonym": null } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld b/instances/v4.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld index 63b464426..7ee27c56c 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld @@ -4,33 +4,24 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorNuclearGroup", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Anterior nuclear group' is a nucleus of dorsal thalamus.", - "description": "Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26)", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002788)]", + "description": "Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002788)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100718", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002788#anterior-nuclear-group-1", "name": "anterior nuclear group", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002788", "synonym": [ - "ANG", - "anterior group of thalamus", - "anterior group of the dorsal thalamus", "anterior nuclear group", "anterior nuclear group of thalamus", - "anterior nuclear group of the thalamus", "anterior nuclei of thalamus", "anterior nucleus of thalamus", "anterior thalamic group", - "anterior thalamic nuclear group", "anterior thalamic nuclei", - "anterior thalamic nucleus", "anterior thalamus", - "dorsal thalamus anterior division", "nuclei anterior thalami", "nuclei anteriores (thalami)", "nuclei anteriores thalami", - "nuclei thalamicus anterior", - "nucleus anterior thalami", - "nucleus thalamicus anterior", - "rostral thalamic nucleus" + "nuclei thalamicus anterior" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/anteriorPerforatedSubstance.jsonld b/instances/v4.0/terminologies/UBERONParcellation/anteriorPerforatedSubstance.jsonld index cd64a15c7..63c32a3a1 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/anteriorPerforatedSubstance.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/anteriorPerforatedSubstance.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorPerforatedSubstance", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Anterior perforated substance' is a regional part of brain. It is part of the telencephalon.", - "description": "Regional part of telencephalon lying on the basal surface and bounded by the olfactory trigone rostrally, the diagonal band medially and caudally and the prepiriform cortex laterally. It is characterized by many perforations caused by small blood vessels entering the gray matter (Meyer et al., J. Comp. Neurol 284: 405, 1989).", + "definition": "Is a regional part of brain. Is part of the telencephalon. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0018141) ('is_a' and 'relationship')]", + "description": "Regional part of telencephalon lying on the basal surface and bounded by the olfactory trigone rostrally, the diagonal band medially and caudally and the prepiriform cortex laterally. It is characterized by many perforations caused by small blood vessels entering the gray matter (Meyer et al., J. Comp. Neurol 284: 405, 1989). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0018141)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100738", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0018141#anterior-perforated-substance-1", "name": "anterior perforated substance", @@ -13,14 +13,8 @@ "synonym": [ "anterior perforated area", "anterior perforated space", - "area olfactoria (Mai)", - "eminentia parolfactoria", - "olfactory area (Carpenter)", - "olfactory area (Mai)", - "olfactory tubercle", - "olfactory tubercle (Ganser)", - "rostral perforated substance", - "substantia perforata anterior", - "tuber olfactorium" + "olfactory area (mai)", + "substantia perforata anterior" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/anteriorThalamicPeduncle.jsonld b/instances/v4.0/terminologies/UBERONParcellation/anteriorThalamicPeduncle.jsonld new file mode 100644 index 000000000..d66a1db0a --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/anteriorThalamicPeduncle.jsonld @@ -0,0 +1,21 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorThalamicPeduncle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter of telencephalon and peduncle of thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022237)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022237#anterior-thalamic-peduncle", + "name": "anterior thalamic peduncle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022237", + "synonym": [ + "anterior peduncle", + "frontal peduncle", + "frontal thalamic peduncle", + "pedunculus rostralis thalami", + "rostral peduncle of thalamus" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld b/instances/v4.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld index cb719c089..b9ba6d54a 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld @@ -4,16 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorThalamicRadiation", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "The 'anterior thalamic radiation' is a white matter fibre bundle. It is part of the thalamic complex.", - "description": "", + "definition": "Is a radiation of cerebral hemisphere and radiation of thalamus. Is part of the anterior limb of internal capsule. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034746) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728673", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034746#anterior-thalamic-radiation", "name": "anterior thalamic radiation", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034746", "synonym": [ "anterior radiation of thalamus", - "athf", - "radiatio thalami anterior", - "radiationes thalamicae anteriores" + "anterior thalamic radiation", + "radiatio thalami anterior" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/aorticPlexus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/aorticPlexus.jsonld new file mode 100644 index 000000000..e3da51698 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/aorticPlexus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/aorticPlexus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an autonomic nerve plexus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035772)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035772#aortic-plexus", + "name": "aortic plexus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035772", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/arachnoidTrabecula.jsonld b/instances/v4.0/terminologies/UBERONParcellation/arachnoidTrabecula.jsonld new file mode 100644 index 000000000..e44dc900f --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/arachnoidTrabecula.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/arachnoidTrabecula", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the arachnoid mater. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000439)]", + "description": "The arachnoid trabeculae are delicate strands of connective tissue that loosely connect the two innermost layers of the meninges -- the arachnoid mater and the pia mater. They are found within the subarachnoid space where cerebrospinal fluid is also found. Embryologically, the trabeculae are the remnants of the common precursor that forms both the arachnoid and pial layers of the meninges. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000439)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000439#arachnoid-trabecula", + "name": "arachnoid trabecula", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000439", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/arachnoidVillus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/arachnoidVillus.jsonld new file mode 100644 index 000000000..365ea0324 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/arachnoidVillus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/arachnoidVillus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the arachnoid mater. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0013153)]", + "description": "Small protrusions of the arachnoid mater into vascular sinuses, acting as one-way pressure-sensitive valves. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0013153)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0013153#arachnoid-villus", + "name": "arachnoid villus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0013153", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/arborVitae.jsonld b/instances/v4.0/terminologies/UBERONParcellation/arborVitae.jsonld new file mode 100644 index 000000000..83cda137e --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/arborVitae.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/arborVitae", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a white matter of cerebellum. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0027333)]", + "description": "The white matter contained within the cerebellum, lying deep to the granule cell layer in the cerebellar cortex, excluding the parts of the cerebellar peduncles that extend outside of the cerebellum. The deep cerebellar nuclei are embedded within the arbor vitae. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0027333)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027333#arbor-vitae", + "name": "arbor vitae", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027333", + "synonym": [ + "arbor vitae", + "arbor vitae" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/arcopallium.jsonld b/instances/v4.0/terminologies/UBERONParcellation/arcopallium.jsonld index eebfb174f..c7b9d0a46 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/arcopallium.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/arcopallium.jsonld @@ -4,18 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/arcopallium", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Arcopallium' is a regional part of brain. It is part of the pallium.", - "description": "A pallial region found in avias that partially overlap regions homologous to the amygdala of mammals.", + "definition": "Is a regional part of brain. Is part of the pallium. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007350) ('is_a' and 'relationship')]", + "description": "A pallial region found in avias that partially overlap regions homologous to the amygdala of mammals. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007350)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100877", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007350#arcopallium", "name": "arcopallium", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007350", - "synonym": [ - "A", - "amygdaloid complex", - "arched pallium", - "archistriatum", - "Arcopallium", - "epistriatum" - ] + "synonym": null } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/arcuateFasciculus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/arcuateFasciculus.jsonld index 33d9d5f19..2ed88bf52 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/arcuateFasciculus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/arcuateFasciculus.jsonld @@ -4,18 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/arcuateFasciculus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "", - "description": "The 'arcuate fasciculus' is a white matter fibre bundle connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain. It is is a cerebral nerve fasciculus.", + "definition": "Is a cerebral nerve fasciculus. Is part of the superior longitudinal fasciculus and the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035937) ('is_a' and 'relationship')]", + "description": "The arcuate fasciculus (Latin, curved bundle) is the neural pathway connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain and is now considered as part of the Superior longitudinal fasciculus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035937)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731407", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035937#arcuate-fasciculus", "name": "arcuate fasciculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035937", "synonym": [ - "AF", "arcuate fascicle", - "ARF", "cerebral arcuate fasciculus", - "fasciculus arcuatus", - "fibrae arcuatae cerebri" + "fasciculus arcuatus" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/asteriscus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/asteriscus.jsonld new file mode 100644 index 000000000..6643fb4e2 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/asteriscus.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/asteriscus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an otolith. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000315)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000315#asteriscus", + "name": "asteriscus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000315", + "synonym": [ + "lagenar otolith", + "lagenolith" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/auditoryRadiation.jsonld b/instances/v4.0/terminologies/UBERONParcellation/auditoryRadiation.jsonld new file mode 100644 index 000000000..a7d39d8d5 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/auditoryRadiation.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/auditoryRadiation", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a radiation of cerebral hemisphere. Is part of the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022262) ('is_a' and 'relationship')]", + "description": "The acoustic radiations or auditory radiations are structures found in the brain, in the ventral cochlear pathway, a part of the auditory system. Lesions to the auditory radiations could be a cause of cortical deafness. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022262)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022262#auditory-radiation", + "name": "auditory radiation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022262", + "synonym": [ + "acoustic radiation", + "geniculotemporal radiation", + "geniculotemporal tract", + "radiatio acustica" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/basalCistern.jsonld b/instances/v4.0/terminologies/UBERONParcellation/basalCistern.jsonld new file mode 100644 index 000000000..126c02f56 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/basalCistern.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basalCistern", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a subarachnoid cistern. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004047)]", + "description": "The enclosed space where the arachnoid membrane stretches between the two temporal lobes and encloses the cerebral peduncles including the structures contained in the interpeduncular fossa. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004047)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004047#basal-cistern", + "name": "basal cistern", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004047", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/basalForebrain.jsonld b/instances/v4.0/terminologies/UBERONParcellation/basalForebrain.jsonld index 3685b7dc7..c543fc3a4 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/basalForebrain.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/basalForebrain.jsonld @@ -4,14 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basalForebrain", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Basal forebrain' is a regional part of brain. It is part of the forebrain.", - "description": "A region of the brain consisting of ventral and rostral subcortical regions of the telencephalon, including among others, the basal ganglia, septal nuclei, amygdala, ventral pallidum, substantia innominata, and basal nucleus of Meynert.", + "definition": "Is a regional part of brain. Is part of the forebrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002743) ('is_a' and 'relationship')]", + "description": "A region of the brain consisting of ventral and rostral subcortical regions of the telencephalon, including among others, the basal ganglia, septal nuclei, amygdala, ventral pallidum, substantia innominata, and basal nucleus of Meynert. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002743)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101101", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002743#basal-forebrain-1", "name": "basal forebrain", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002743", - "synonym": [ - "basal forebrain area", - "pars basalis telencephali" - ] + "synonym": null } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/basalNuclearComplex.jsonld b/instances/v4.0/terminologies/UBERONParcellation/basalNuclearComplex.jsonld index 6a045868c..cb9c7728f 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/basalNuclearComplex.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/basalNuclearComplex.jsonld @@ -4,18 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basalNuclearComplex", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Basal nuclear complex' is a nuclear complex of neuraxis and gray matter of forebrain. It is part of the basal forebrain.", - "description": "The deep nuclei of telencephalic origin found in the basal region of the forebrain, The deep nuclei found in the basal forebrain.Large subcortical nuclear masses derived from the telencephalon and located in the basal regions of the cerebral hemispheres. (MeSH definition of Basal Ganglia in UMLS).", + "definition": "Is a nuclear complex of neuraxis and gray matter of forebrain. Is part of the basal forebrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006098) ('is_a' and 'relationship')]", + "description": "The deep nuclei of telencephalic origin found in the basal region of the forebrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006098)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101108", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006098#basal-nuclear-complex-1", "name": "basal nuclear complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006098", "synonym": [ - "basal ganglia", - "basal ganglia (anatomic)", "basal nuclei", - "basal nuclei of the forebrain", - "corpus striatum (Savel'ev)", - "ganglia basales" + "basal nuclei of the forebrain" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/basalPartOfPons.jsonld b/instances/v4.0/terminologies/UBERONParcellation/basalPartOfPons.jsonld index 17b294c76..cb55df0ee 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/basalPartOfPons.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/basalPartOfPons.jsonld @@ -4,24 +4,20 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basalPartOfPons", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Basal part of pons' is a regional part of brain. It is part of the pons.", - "description": "Ventral subdivision of the pons which consists of the massive pontine pertuberance on pontine ventral surface.", + "definition": "Is a regional part of brain. Is part of the pons. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002567) ('is_a' and 'relationship')]", + "description": "Ventral subdivision of the pons which consists of the massive pontine pertuberance on pontine ventral surface. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002567)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101110", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002567#basal-part-of-pons-1", "name": "basal part of pons", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002567", "synonym": [ - "basal part of the pons", "basal portion of pons", "base of pons", "basilar part of pons", - "basilar pons", - "basis pontis", - "pars anterior pontis", "pars basilaris pontis", - "pars ventralis pontis", "pons proper", "ventral pons", "ventral portion of pons" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/basalPlateMedullaOblongata.jsonld b/instances/v4.0/terminologies/UBERONParcellation/basalPlateMedullaOblongata.jsonld new file mode 100644 index 000000000..4b645456a --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/basalPlateMedullaOblongata.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basalPlateMedullaOblongata", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a neural tube basal plate. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005240)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005240#basal-plate-medulla-oblongata", + "name": "basal plate medulla oblongata", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005240", + "synonym": [ + "medulla oblongata basal plate" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/basisPontis.jsonld b/instances/v4.0/terminologies/UBERONParcellation/basisPontis.jsonld new file mode 100644 index 000000000..eaec1a4f1 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/basisPontis.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basisPontis", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the pons. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0024110) ('is_a' and 'relationship')]", + "description": "The basis pontis is the anterior portion of the pons. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0024110)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024110#basis-pontis", + "name": "basis pontis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024110", + "synonym": [ + "basis pontis", + "basis pontis" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld b/instances/v4.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld index 5dc0e25ef..35828d853 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/basolateralAmygdaloidNuclearComplex", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Basolateral amygdaloid nuclear complex' is a cerebral hemisphere gray matter and nuclear complex of neuraxis. It is part of the amygdala.", - "description": "A set of amygdalar nuclei comprising the lateral nucleus (LA), the basal nucleus (BA), and the accessory basal nuclei (ABN). These nuclei are bordered laterally by the external capsule and medially by the central amygdalar nucleus as well as the amygdalohippocampal area. This definition refers to the rat Basolateral nuclear complex.", + "definition": "Is a cerebral hemisphere gray matter and nuclear complex of neuraxis. Is part of the amygdala. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006107) ('is_a' and 'relationship')]", + "description": "A set of amygdalar nuclei comprising the lateral nucleus (LA), the basal nucleus (BA), and the accessory basal nuclei (ABN). These nuclei are bordered laterally by the external capsule and medially by the central amygdalar nucleus as well as the amygdalohippocampal area. This definition refers to the rat Basolateral nuclear complex. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0006107)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101128", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006107#basolateral-nuclear-complex", "name": "basolateral amygdaloid nuclear complex", @@ -13,17 +13,18 @@ "synonym": [ "amygdalar basolateral nucleus", "amygdaloid basolateral complex", + "amygdaloid basolateral complex", "basolateral amygdala", "basolateral amygdaloid nuclear complex", - "basolateral complex", "basolateral nuclear complex", "basolateral nuclear group", + "basolateral nuclear group", "basolateral nuclei of amygdala", "basolateral subdivision of amygdala", "BL", - "deep nuclei", "pars basolateralis (Corpus amygdaloideum)", - "set of basolateral nuclei of amygdala", + "vicarious cortex", "vicarious cortex" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/bodyOfCorpusCallosum.jsonld b/instances/v4.0/terminologies/UBERONParcellation/bodyOfCorpusCallosum.jsonld index 2899ab95d..5f66b1c42 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/bodyOfCorpusCallosum.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/bodyOfCorpusCallosum.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/bodyOfCorpusCallosum", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "The 'body of corpus callosum' is a white matter structure. It is part of the corpus callosum.", - "description": "", + "definition": "Is a cerebral hemisphere white matter. Is part of the corpus callosum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015510) ('is_a' and 'relationship')]", + "description": "An area within the corpus callosum, a white matter structure within the cleft that separates the left and right cerebral hemispheres in the mammalian brain, between the genu (anterior region) and the splenium (posterior region). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015510)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728551", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015510#body-of-corpus-callosum", "name": "body of corpus callosum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015510", "synonym": [ "corpus callosum body", - "corpus callosum corpus", - "corpus callosum truncus", - "trunculus corporis callosi", - "truncus corporis callosi", - "truncus corpus callosi", - "trunk of corpus callosum" + "truncus corporis callosi" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld b/instances/v4.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld index c76d8a6e4..56bfb835e 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/bodyOfFornix", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Body of fornix' is a central nervous system cell part cluster. It is part of the fornix of brain.", - "description": "Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum", + "definition": "Is a central nervous system cell part cluster. Is part of the fornix of brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004680) ('is_a' and 'relationship')]", + "description": "Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004680)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101373", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004680#body-of-fornix-1", "name": "body of fornix", @@ -16,7 +16,7 @@ "column of fornix", "columna fornicis", "columns of fornix", - "columns of the fornix", "fornix body" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/brachiumOfInferiorColliculus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/brachiumOfInferiorColliculus.jsonld index 557f14d28..2fe7d02d0 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/brachiumOfInferiorColliculus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/brachiumOfInferiorColliculus.jsonld @@ -4,23 +4,19 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brachiumOfInferiorColliculus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brachium of inferior colliculus' is a neuron projection bundle and central nervous system cell part cluster. It is part of the inferior colliculus and white matter.", - "description": "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [WP,unvetted].", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the inferior colliculus and the white matter. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003025) ('is_a' and 'relationship')]", + "description": "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003025)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101409", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003025#brachium-of-inferior-colliculus-1", "name": "brachium of inferior colliculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003025", "synonym": [ - "brachium colliculi caudalis", - "brachium colliculi inferioris", "brachium of medial geniculate", - "brachium of the inferior colliculus", - "brachium quadrigeminum inferius", "inferior brachium", "inferior collicular brachium", "inferior colliculus brachium", "inferior quadrigeminal brachium", - "nucleus of the brachium of the inferior colliculus", "peduncle of inferior colliculus" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld index b0296e163..b51fecab1 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld @@ -4,21 +4,17 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brachiumOfSuperiorColliculus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brachium of superior colliculus' is a neuron projection bundle and central nervous system cell part cluster. It is part of the white matter of superior colliculus.", - "description": "Bundle of fibers that passes over the medial geniculate nucleus (in humans) to reach the superior colliculus. Contains afferents from the retina.", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the white matter of superior colliculus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002580) ('is_a' and 'relationship')]", + "description": "Bundle of fibers that passes over the medial geniculate nucleus (in humans) to reach the superior colliculus. Contains afferents from the retina. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002580)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101410", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002580#brachium-of-superior-colliculus-1", "name": "brachium of superior colliculus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002580", "synonym": [ - "brachium colliculi cranialis", - "brachium colliculi rostralis", - "brachium colliculi superioris", - "brachium of the superior colliculus", - "brachium quadrigeminum superius", "superior brachium", "superior collicular brachium", "superior colliculus brachium", "superior quadrigeminal brachium" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/brain.jsonld b/instances/v4.0/terminologies/UBERONParcellation/brain.jsonld new file mode 100644 index 000000000..3831687b6 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/brain.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brain", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the central nervous system. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000955)]", + "description": "The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000955)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000955#brain-1", + "name": "brain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000955", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/brainEndothelium.jsonld b/instances/v4.0/terminologies/UBERONParcellation/brainEndothelium.jsonld index bc23e0723..512dc4654 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/brainEndothelium.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/brainEndothelium.jsonld @@ -4,11 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brainEndothelium", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brain endothelium' is part of the brain.", - "description": "Vascular endothelium found in blood vessels of the blood-brain-barrier.", + "definition": "Is part of the brain. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0013694)]", + "description": "Vascular endothelium found in blood vessels of the blood-brain-barrier. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0013694)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0733041", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0013694#brain-endothelium", "name": "brain endothelium", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0013694", "synonym": null } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/brainEpendyma.jsonld b/instances/v4.0/terminologies/UBERONParcellation/brainEpendyma.jsonld index bb1d9433f..f5c1539eb 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/brainEpendyma.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/brainEpendyma.jsonld @@ -4,11 +4,14 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brainEpendyma", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brain ependyma' is an ependyma. It is part of the brain ventricle.", - "description": "The ependymal cell layer that lines the brain ventricles.", + "definition": "Is an ependyma. Is part of the brain ventricle. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005357) ('is_a' and 'relationship')]", + "description": "The ependymal cell layer that lines the brain ventricles. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005357)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0730349", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005357#brain-ependyma", "name": "brain ependyma", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005357", - "synonym": null + "synonym": [ + "ependyma of ventricular system of brain" + ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/brainGrayMatter.jsonld b/instances/v4.0/terminologies/UBERONParcellation/brainGrayMatter.jsonld index 134a5a708..7b2ba1e4c 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/brainGrayMatter.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/brainGrayMatter.jsonld @@ -4,11 +4,18 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brainGrayMatter", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brain gray matter' is a gray matter. It is part of the brain.", - "description": null, + "definition": "Is a gray matter. Is part of the brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003528) ('is_a' and 'relationship')]", + "description": "A gray matter that is part of a brain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003528)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0725337", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003528#brain-gray-matter", "name": "brain gray matter", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003528", - "synonym": null + "synonym": [ + "brain grey matter", + "brain grey substance", + "gray matter of brain", + "grey matter of brain", + "grey substance of brain" + ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/brainMarginalZone.jsonld b/instances/v4.0/terminologies/UBERONParcellation/brainMarginalZone.jsonld index cd68712fc..9e151b4bb 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/brainMarginalZone.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/brainMarginalZone.jsonld @@ -4,11 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brainMarginalZone", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brain marginal zone' is an anatomical entity. It is part of the brain.", - "description": "The part of the future brain that is derived from the mantle layer of the neural tube.", + "definition": "Is an anatomical entity. Is part of the brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010403) ('is_a' and 'relationship')]", + "description": "The part of the future brain that is derived from the mantle layer of the neural tube. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010403)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0734549", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010403#brain-marginal-zone", "name": "brain marginal zone", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010403", "synonym": null } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/brainMeninx.jsonld b/instances/v4.0/terminologies/UBERONParcellation/brainMeninx.jsonld index e2ede5a84..66e0df8e3 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/brainMeninx.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/brainMeninx.jsonld @@ -4,11 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brainMeninx", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brain meninx' is a meninx. It is part of the brain.", - "description": null, + "definition": "Is a meninx. Is part of the brain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003547) ('is_a' and 'relationship')]", + "description": "A meninx that is part of a brain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003547)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726394", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003547#brain-meninx", "name": "brain meninx", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003547", - "synonym": null + "synonym": [ + "brain meninges", + "meninges of brain", + "meninx of brain" + ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/brainstem.jsonld b/instances/v4.0/terminologies/UBERONParcellation/brainstem.jsonld index 5f7cdb9c5..d90a6ddfe 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/brainstem.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/brainstem.jsonld @@ -4,20 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/brainstem", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Brainstem' is a regional part of brain.", - "description": "The lower portion of the brain through which the forebrain sends information to, and receives information from, the spinal cord and peripheral nerves. Major functions located in the brainstem include those necessary for survival, e.g., breathing, heart rate, blood pressure, and arousal. (NIDA Media Guide Glossary). Note that the definition of brainstem varies in different nomenclatures, for example, some definitions include the diencephalon.", + "definition": "Is a regional part of brain. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002298)]", + "description": "Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002298)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101444", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002298#brainstem-1", "name": "brainstem", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002298", "synonym": [ - "accessory medullary lamina of pallidum", "brain stem", - "lamella pallidi incompleta", - "lamina medullaris accessoria", - "lamina medullaris incompleta pallidi", - "lamina pallidi incompleta", - "truncus encephali", - "truncus encephalicus" + "truncus encephali" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/bulboidCorpuscle.jsonld b/instances/v4.0/terminologies/UBERONParcellation/bulboidCorpuscle.jsonld new file mode 100644 index 000000000..6f83c76d1 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/bulboidCorpuscle.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/bulboidCorpuscle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a sensory receptor. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035968)]", + "description": "A receptor in the transitional zone between mucous membrane and skin. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035968)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035968#bulboid-corpuscle", + "name": "bulboid corpuscle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035968", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/calcifiedStructureOfBrain.jsonld b/instances/v4.0/terminologies/UBERONParcellation/calcifiedStructureOfBrain.jsonld index a2b62ab60..b2af0470b 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/calcifiedStructureOfBrain.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/calcifiedStructureOfBrain.jsonld @@ -4,7 +4,7 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/calcifiedStructureOfBrain", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Calcified structure of brain' is part of the brain.", + "definition": "Is part of the brain. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0017631)]", "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731107", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0017631#calcified-structure-of-brain", @@ -12,3 +12,4 @@ "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0017631", "synonym": null } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/canalOfSchlemm.jsonld b/instances/v4.0/terminologies/UBERONParcellation/canalOfSchlemm.jsonld new file mode 100644 index 000000000..ae5326938 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/canalOfSchlemm.jsonld @@ -0,0 +1,21 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/canalOfSchlemm", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the cavernous sinus. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004029)]", + "description": "The vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004029)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004029#canal-of-schlemm", + "name": "canal of Schlemm", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004029", + "synonym": [ + "Schlemm's canal", + "scleral sinus", + "scleral venous sinus", + "sinus venosus of sclera", + "sinus venosus sclerae" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld b/instances/v4.0/terminologies/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld index d5bce79dc..ffd98a313 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld @@ -4,15 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/capsuleOfMedialGeniculateBody", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Capsule of medial geniculate body' is a diencephalic white matter. It is part of the medial geniculate body.", - "description": "", + "definition": "Is a diencephalic white matter. Is part of the medial geniculate body. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002627) ('is_a' and 'relationship')]", + "description": null, "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101644", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002627#capsule-of-medial-geniculate-body-1", "name": "capsule of medial geniculate body", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002627", "synonym": [ "capsula corporis geniculati medialis", - "capsule of the medial geniculate body", "medial geniculate body capsule" ] } + From 834fbb8f088bd11680463874ad0f16c47a3d2871 Mon Sep 17 00:00:00 2001 From: Ulrike Schlegel Date: Sat, 18 Jan 2025 15:11:50 +0100 Subject: [PATCH 2/3] typo fix --- .../terminologies/UBERONParcellation/anteriorMacula.jsonld | 2 +- .../v3.0/terminologies/UBERONParcellation/anteriorMacula.jsonld | 2 +- .../v4.0/terminologies/UBERONParcellation/anteriorMacula.jsonld | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/instances/latest/terminologies/UBERONParcellation/anteriorMacula.jsonld b/instances/latest/terminologies/UBERONParcellation/anteriorMacula.jsonld index 855b8bdc5..f352afc5b 100644 --- a/instances/latest/terminologies/UBERONParcellation/anteriorMacula.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/anteriorMacula.jsonld @@ -5,7 +5,7 @@ "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorMacula", "@type": "https://openminds.om-i.org/types/UBERONParcellation", "definition": "Is part of the otolith organ. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", - "description": "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", + "description": "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", "interlexIdentifier": null, "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000168#anterior-macula", "name": "anterior macula", diff --git a/instances/v3.0/terminologies/UBERONParcellation/anteriorMacula.jsonld b/instances/v3.0/terminologies/UBERONParcellation/anteriorMacula.jsonld index 6ac50d5a2..d12b19780 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/anteriorMacula.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/anteriorMacula.jsonld @@ -5,7 +5,7 @@ "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorMacula", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", "definition": "Is part of the otolith organ. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", - "description": "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", + "description": "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", "interlexIdentifier": null, "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000168#anterior-macula", "name": "anterior macula", diff --git a/instances/v4.0/terminologies/UBERONParcellation/anteriorMacula.jsonld b/instances/v4.0/terminologies/UBERONParcellation/anteriorMacula.jsonld index 855b8bdc5..f352afc5b 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/anteriorMacula.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/anteriorMacula.jsonld @@ -5,7 +5,7 @@ "@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteriorMacula", "@type": "https://openminds.om-i.org/types/UBERONParcellation", "definition": "Is part of the otolith organ. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", - "description": "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", + "description": "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000168)]", "interlexIdentifier": null, "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000168#anterior-macula", "name": "anterior macula", From df4a33a40e5d6c1d6f0cdea293d7b1021e0713ec Mon Sep 17 00:00:00 2001 From: Ulrike Schlegel <54898984+UlrikeS91@users.noreply.github.com> Date: Fri, 14 Feb 2025 15:21:11 +0100 Subject: [PATCH 3/3] remove synonym duplicates (second attempt) --- .../accessoryMedullaryLaminaOfGlobusPallidus.jsonld | 1 - .../terminologies/UBERONParcellation/ansaCervicalis.jsonld | 4 +--- .../UBERONParcellation/anteriorNuclearGroup.jsonld | 1 - .../UBERONParcellation/anteriorThalamicRadiation.jsonld | 1 - .../terminologies/UBERONParcellation/arborVitae.jsonld | 5 +---- .../terminologies/UBERONParcellation/basisPontis.jsonld | 5 +---- .../basolateralAmygdaloidNuclearComplex.jsonld | 4 ---- .../terminologies/UBERONParcellation/bodyOfFornix.jsonld | 1 - .../accessoryMedullaryLaminaOfGlobusPallidus.jsonld | 1 - .../terminologies/UBERONParcellation/ansaCervicalis.jsonld | 4 +--- .../UBERONParcellation/anteriorNuclearGroup.jsonld | 1 - .../UBERONParcellation/anteriorThalamicRadiation.jsonld | 1 - .../v3.0/terminologies/UBERONParcellation/arborVitae.jsonld | 5 +---- .../v3.0/terminologies/UBERONParcellation/basisPontis.jsonld | 5 +---- .../basolateralAmygdaloidNuclearComplex.jsonld | 4 ---- .../terminologies/UBERONParcellation/bodyOfFornix.jsonld | 1 - .../accessoryMedullaryLaminaOfGlobusPallidus.jsonld | 1 - .../terminologies/UBERONParcellation/ansaCervicalis.jsonld | 4 +--- .../UBERONParcellation/anteriorNuclearGroup.jsonld | 1 - .../UBERONParcellation/anteriorThalamicRadiation.jsonld | 1 - .../v4.0/terminologies/UBERONParcellation/arborVitae.jsonld | 5 +---- .../v4.0/terminologies/UBERONParcellation/basisPontis.jsonld | 5 +---- .../basolateralAmygdaloidNuclearComplex.jsonld | 4 ---- .../terminologies/UBERONParcellation/bodyOfFornix.jsonld | 1 - 24 files changed, 9 insertions(+), 57 deletions(-) diff --git a/instances/latest/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld b/instances/latest/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld index 7bfd954db..eb45a748d 100644 --- a/instances/latest/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld @@ -14,7 +14,6 @@ "accessory medullar lamina of pallidum", "accessory medullary lamina", "accessory medullary lamina of corpus striatum", - "accessory medullary lamina of globus pallidus", "accessory medullary lamina pallidus", "incomplete medullary lamina of globus pallidus", "lamina medullaris accessoria corporis striati" diff --git a/instances/latest/terminologies/UBERONParcellation/ansaCervicalis.jsonld b/instances/latest/terminologies/UBERONParcellation/ansaCervicalis.jsonld index 762217535..fd94fbc9c 100644 --- a/instances/latest/terminologies/UBERONParcellation/ansaCervicalis.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/ansaCervicalis.jsonld @@ -10,8 +10,6 @@ "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005430#ansa-cervicalis", "name": "ansa cervicalis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005430", - "synonym": [ - "ansa cervicalis" - ] + "synonym": null } diff --git a/instances/latest/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld b/instances/latest/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld index 7ee27c56c..e282014ac 100644 --- a/instances/latest/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld @@ -11,7 +11,6 @@ "name": "anterior nuclear group", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002788", "synonym": [ - "anterior nuclear group", "anterior nuclear group of thalamus", "anterior nuclei of thalamus", "anterior nucleus of thalamus", diff --git a/instances/latest/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld b/instances/latest/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld index b9ba6d54a..2fe0d376b 100644 --- a/instances/latest/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld @@ -12,7 +12,6 @@ "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034746", "synonym": [ "anterior radiation of thalamus", - "anterior thalamic radiation", "radiatio thalami anterior" ] } diff --git a/instances/latest/terminologies/UBERONParcellation/arborVitae.jsonld b/instances/latest/terminologies/UBERONParcellation/arborVitae.jsonld index 83cda137e..6d15fb1a1 100644 --- a/instances/latest/terminologies/UBERONParcellation/arborVitae.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/arborVitae.jsonld @@ -10,9 +10,6 @@ "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027333#arbor-vitae", "name": "arbor vitae", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027333", - "synonym": [ - "arbor vitae", - "arbor vitae" - ] + "synonym": null } diff --git a/instances/latest/terminologies/UBERONParcellation/basisPontis.jsonld b/instances/latest/terminologies/UBERONParcellation/basisPontis.jsonld index eaec1a4f1..5c5716c97 100644 --- a/instances/latest/terminologies/UBERONParcellation/basisPontis.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/basisPontis.jsonld @@ -10,9 +10,6 @@ "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024110#basis-pontis", "name": "basis pontis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024110", - "synonym": [ - "basis pontis", - "basis pontis" - ] + "synonym": null } diff --git a/instances/latest/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld b/instances/latest/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld index 35828d853..90ab8a102 100644 --- a/instances/latest/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld @@ -13,17 +13,13 @@ "synonym": [ "amygdalar basolateral nucleus", "amygdaloid basolateral complex", - "amygdaloid basolateral complex", "basolateral amygdala", - "basolateral amygdaloid nuclear complex", "basolateral nuclear complex", "basolateral nuclear group", - "basolateral nuclear group", "basolateral nuclei of amygdala", "basolateral subdivision of amygdala", "BL", "pars basolateralis (Corpus amygdaloideum)", - "vicarious cortex", "vicarious cortex" ] } diff --git a/instances/latest/terminologies/UBERONParcellation/bodyOfFornix.jsonld b/instances/latest/terminologies/UBERONParcellation/bodyOfFornix.jsonld index 56bfb835e..3fc04901c 100644 --- a/instances/latest/terminologies/UBERONParcellation/bodyOfFornix.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/bodyOfFornix.jsonld @@ -11,7 +11,6 @@ "name": "body of fornix", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004680", "synonym": [ - "body of fornix", "body of fornix of forebrain", "column of fornix", "columna fornicis", diff --git a/instances/v3.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld index a7883b829..a3fb2c077 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld @@ -14,7 +14,6 @@ "accessory medullar lamina of pallidum", "accessory medullary lamina", "accessory medullary lamina of corpus striatum", - "accessory medullary lamina of globus pallidus", "accessory medullary lamina pallidus", "incomplete medullary lamina of globus pallidus", "lamina medullaris accessoria corporis striati" diff --git a/instances/v3.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld b/instances/v3.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld index b401cae01..a28706f65 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld @@ -10,8 +10,6 @@ "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005430#ansa-cervicalis", "name": "ansa cervicalis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005430", - "synonym": [ - "ansa cervicalis" - ] + "synonym": null } diff --git a/instances/v3.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld b/instances/v3.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld index dbb9131b5..d8430ed49 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld @@ -11,7 +11,6 @@ "name": "anterior nuclear group", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002788", "synonym": [ - "anterior nuclear group", "anterior nuclear group of thalamus", "anterior nuclei of thalamus", "anterior nucleus of thalamus", diff --git a/instances/v3.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld b/instances/v3.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld index ee7b5c279..1ff27d5e6 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld @@ -12,7 +12,6 @@ "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034746", "synonym": [ "anterior radiation of thalamus", - "anterior thalamic radiation", "radiatio thalami anterior" ] } diff --git a/instances/v3.0/terminologies/UBERONParcellation/arborVitae.jsonld b/instances/v3.0/terminologies/UBERONParcellation/arborVitae.jsonld index 25cbe06a0..cff762f17 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/arborVitae.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/arborVitae.jsonld @@ -10,9 +10,6 @@ "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027333#arbor-vitae", "name": "arbor vitae", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027333", - "synonym": [ - "arbor vitae", - "arbor vitae" - ] + "synonym": null } diff --git a/instances/v3.0/terminologies/UBERONParcellation/basisPontis.jsonld b/instances/v3.0/terminologies/UBERONParcellation/basisPontis.jsonld index 5e2e3c83d..5f7e8a329 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/basisPontis.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/basisPontis.jsonld @@ -10,9 +10,6 @@ "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024110#basis-pontis", "name": "basis pontis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024110", - "synonym": [ - "basis pontis", - "basis pontis" - ] + "synonym": null } diff --git a/instances/v3.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld b/instances/v3.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld index 47ab386d2..64232c3fd 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld @@ -13,17 +13,13 @@ "synonym": [ "amygdalar basolateral nucleus", "amygdaloid basolateral complex", - "amygdaloid basolateral complex", "basolateral amygdala", - "basolateral amygdaloid nuclear complex", "basolateral nuclear complex", "basolateral nuclear group", - "basolateral nuclear group", "basolateral nuclei of amygdala", "basolateral subdivision of amygdala", "BL", "pars basolateralis (Corpus amygdaloideum)", - "vicarious cortex", "vicarious cortex" ] } diff --git a/instances/v3.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld b/instances/v3.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld index 1e8ea992a..73c2a044f 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld @@ -11,7 +11,6 @@ "name": "body of fornix", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004680", "synonym": [ - "body of fornix", "body of fornix of forebrain", "column of fornix", "columna fornicis", diff --git a/instances/v4.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld index 7bfd954db..eb45a748d 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld @@ -14,7 +14,6 @@ "accessory medullar lamina of pallidum", "accessory medullary lamina", "accessory medullary lamina of corpus striatum", - "accessory medullary lamina of globus pallidus", "accessory medullary lamina pallidus", "incomplete medullary lamina of globus pallidus", "lamina medullaris accessoria corporis striati" diff --git a/instances/v4.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld b/instances/v4.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld index 762217535..fd94fbc9c 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/ansaCervicalis.jsonld @@ -10,8 +10,6 @@ "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005430#ansa-cervicalis", "name": "ansa cervicalis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005430", - "synonym": [ - "ansa cervicalis" - ] + "synonym": null } diff --git a/instances/v4.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld b/instances/v4.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld index 7ee27c56c..e282014ac 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/anteriorNuclearGroup.jsonld @@ -11,7 +11,6 @@ "name": "anterior nuclear group", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002788", "synonym": [ - "anterior nuclear group", "anterior nuclear group of thalamus", "anterior nuclei of thalamus", "anterior nucleus of thalamus", diff --git a/instances/v4.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld b/instances/v4.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld index b9ba6d54a..2fe0d376b 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/anteriorThalamicRadiation.jsonld @@ -12,7 +12,6 @@ "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034746", "synonym": [ "anterior radiation of thalamus", - "anterior thalamic radiation", "radiatio thalami anterior" ] } diff --git a/instances/v4.0/terminologies/UBERONParcellation/arborVitae.jsonld b/instances/v4.0/terminologies/UBERONParcellation/arborVitae.jsonld index 83cda137e..6d15fb1a1 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/arborVitae.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/arborVitae.jsonld @@ -10,9 +10,6 @@ "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027333#arbor-vitae", "name": "arbor vitae", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027333", - "synonym": [ - "arbor vitae", - "arbor vitae" - ] + "synonym": null } diff --git a/instances/v4.0/terminologies/UBERONParcellation/basisPontis.jsonld b/instances/v4.0/terminologies/UBERONParcellation/basisPontis.jsonld index eaec1a4f1..5c5716c97 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/basisPontis.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/basisPontis.jsonld @@ -10,9 +10,6 @@ "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024110#basis-pontis", "name": "basis pontis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024110", - "synonym": [ - "basis pontis", - "basis pontis" - ] + "synonym": null } diff --git a/instances/v4.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld b/instances/v4.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld index 35828d853..90ab8a102 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld @@ -13,17 +13,13 @@ "synonym": [ "amygdalar basolateral nucleus", "amygdaloid basolateral complex", - "amygdaloid basolateral complex", "basolateral amygdala", - "basolateral amygdaloid nuclear complex", "basolateral nuclear complex", "basolateral nuclear group", - "basolateral nuclear group", "basolateral nuclei of amygdala", "basolateral subdivision of amygdala", "BL", "pars basolateralis (Corpus amygdaloideum)", - "vicarious cortex", "vicarious cortex" ] } diff --git a/instances/v4.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld b/instances/v4.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld index 56bfb835e..3fc04901c 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/bodyOfFornix.jsonld @@ -11,7 +11,6 @@ "name": "body of fornix", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004680", "synonym": [ - "body of fornix", "body of fornix of forebrain", "column of fornix", "columna fornicis",