From c05a64a672b0477bbc4ed78dbbe899dd9ddfe630 Mon Sep 17 00:00:00 2001 From: lzehl Date: Tue, 16 Jan 2024 13:21:32 +0100 Subject: [PATCH 1/2] README update --- README.md | 12 +++++++----- 1 file changed, 7 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 9563a7887..11dd3f4cf 100644 --- a/README.md +++ b/README.md @@ -2,14 +2,14 @@ - openMINDS instances logo: created by U. Schlegel, L. Zehl, C. Hagen Blixhavn + openMINDS instances # openMINDS_instances -![GitHub][license-url] -![GitHub contributors][contributors-url] +[![GitHub][license-shield]][license-url] +[![GitHub contributors][contributors-shield]][contributors-url] To learn more about the openMINDS metadata framework please go to :arrow_right: [**ReadTheDocs**][docu-url]. For browsing through all metadata instances you can also directly jump to the :arrow_right: [**instance libraries**][libraries-url]. @@ -22,7 +22,9 @@ If you want to contribute please follow our :arrow_right: [**contribution guidel [contribution-url]: https://openminds-documentation.readthedocs.io/en/latest/shared/contribution_guidelines.html -[contributors-url]: https://img.shields.io/github/contributors/openMetadataInitiative/openMINDS_documentation +[contributors-url]: https://github.com/openMetadataInitiative/openMINDS_instances/graphs/contributors +[contributors-shield]: https://img.shields.io/github/contributors/openMetadataInitiative/openMINDS_instances [docu-url]: https://openminds-documentation.readthedocs.io [libraries-url]: https://openminds-documentation.readthedocs.io/en/latest/instance_libraries.html -[license-url]: https://img.shields.io/github/license/openMetadataInitiative/openMINDS_documentation +[license-url]: https://raw.githubusercontent.com/openMetadataInitiative/openMINDS_instances/main/LICENSE +[license-shield]: https://img.shields.io/github/license/openMetadataInitiative/openMINDS_instances From 1c509bcc8acbaf71936afd9c4b633b7af2ac332a Mon Sep 17 00:00:00 2001 From: lzehl Date: Mon, 29 Jan 2024 13:38:53 +0100 Subject: [PATCH 2/2] start separation of MRI pulse sequences --- .../{technique => MRIPulsSequence}/T1PulseSequence.jsonld | 4 ++-- .../{technique => MRIPulsSequence}/T2PulseSequence.jsonld | 4 ++-- .../echoPlanarPulseSequence.jsonld | 4 ++-- .../gradientEchoPulseSequence.jsonld | 4 ++-- .../spinEchoPulseSequence.jsonld | 4 ++-- 5 files changed, 10 insertions(+), 10 deletions(-) rename instances/latest/terminologies/{technique => MRIPulsSequence}/T1PulseSequence.jsonld (82%) rename instances/latest/terminologies/{technique => MRIPulsSequence}/T2PulseSequence.jsonld (82%) rename instances/latest/terminologies/{technique => MRIPulsSequence}/echoPlanarPulseSequence.jsonld (79%) rename instances/latest/terminologies/{technique => MRIPulsSequence}/gradientEchoPulseSequence.jsonld (80%) rename instances/latest/terminologies/{technique => MRIPulsSequence}/spinEchoPulseSequence.jsonld (78%) diff --git a/instances/latest/terminologies/technique/T1PulseSequence.jsonld b/instances/latest/terminologies/MRIPulsSequence/T1PulseSequence.jsonld similarity index 82% rename from instances/latest/terminologies/technique/T1PulseSequence.jsonld rename to instances/latest/terminologies/MRIPulsSequence/T1PulseSequence.jsonld index aa965e895..b82dfd19c 100644 --- a/instances/latest/terminologies/technique/T1PulseSequence.jsonld +++ b/instances/latest/terminologies/MRIPulsSequence/T1PulseSequence.jsonld @@ -2,8 +2,8 @@ "@context": { "@vocab": "https://openminds.ebrains.eu/vocab/" }, - "@id": "https://openminds.ebrains.eu/instances/technique/T1PulseSequence", - "@type": "https://openminds.ebrains.eu/controlledTerms/Technique", + "@id": "https://openminds.ebrains.eu/instances/MRIPulseSequence/T1PulseSequence", + "@type": "https://openminds.ebrains.eu/controlledTerms/MRIPulseSequence", "definition": "In magnetic resonance imaging, a 'T1 pulse sequence' is a contrasting technique that allows the magnetization of the specimen or object to recover (spin-lattice relaxation) before measuring the magnetic resonance signal by changing the repetition time. [adapted from [wikipedia](https://en.wikipedia.org/wiki/MRI_sequence)]", "description": null, "interlexIdentifier": null, diff --git a/instances/latest/terminologies/technique/T2PulseSequence.jsonld b/instances/latest/terminologies/MRIPulsSequence/T2PulseSequence.jsonld similarity index 82% rename from instances/latest/terminologies/technique/T2PulseSequence.jsonld rename to instances/latest/terminologies/MRIPulsSequence/T2PulseSequence.jsonld index 223e2b1f5..fa8f92a02 100644 --- a/instances/latest/terminologies/technique/T2PulseSequence.jsonld +++ b/instances/latest/terminologies/MRIPulsSequence/T2PulseSequence.jsonld @@ -2,8 +2,8 @@ "@context": { "@vocab": "https://openminds.ebrains.eu/vocab/" }, - "@id": "https://openminds.ebrains.eu/instances/technique/T2PulseSequence", - "@type": "https://openminds.ebrains.eu/controlledTerms/Technique", + "@id": "https://openminds.ebrains.eu/instances/MRIPulseSequence/T2PulseSequence", + "@type": "https://openminds.ebrains.eu/controlledTerms/MRIPulseSequence", "definition": "In magnetic resonance imaging, a 'T2 pulse sequence' is a contrasting technique that allows the magnetization of the specimen or object to decay (spin-spin relaxation) before measuring the magnetic resonance signal by changing the echo time. [adapted from [wikipedia](https://en.wikipedia.org/wiki/MRI_sequence)]", "description": null, "interlexIdentifier": null, diff --git a/instances/latest/terminologies/technique/echoPlanarPulseSequence.jsonld b/instances/latest/terminologies/MRIPulsSequence/echoPlanarPulseSequence.jsonld similarity index 79% rename from instances/latest/terminologies/technique/echoPlanarPulseSequence.jsonld rename to instances/latest/terminologies/MRIPulsSequence/echoPlanarPulseSequence.jsonld index d29990329..9e8801b41 100644 --- a/instances/latest/terminologies/technique/echoPlanarPulseSequence.jsonld +++ b/instances/latest/terminologies/MRIPulsSequence/echoPlanarPulseSequence.jsonld @@ -2,8 +2,8 @@ "@context": { "@vocab": "https://openminds.ebrains.eu/vocab/" }, - "@id": "https://openminds.ebrains.eu/instances/technique/echoPlanarPulseSequence", - "@type": "https://openminds.ebrains.eu/controlledTerms/Technique", + "@id": "https://openminds.ebrains.eu/instances/MRIPulseSequence/echoPlanarPulseSequence", + "@type": "https://openminds.ebrains.eu/controlledTerms/MRIPulseSequence", "definition": "In magnetic resonance imaging, a 'echo-planar pulse sequence' is a contrasting technique where each radio frequency field (RF) excitation is followed by a train of gradient echoes with different spatial encoding allowing for very rapid scanning. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Physics_of_magnetic_resonance_imaging#Echo-planar_imaging)]", "description": null, "interlexIdentifier": null, diff --git a/instances/latest/terminologies/technique/gradientEchoPulseSequence.jsonld b/instances/latest/terminologies/MRIPulsSequence/gradientEchoPulseSequence.jsonld similarity index 80% rename from instances/latest/terminologies/technique/gradientEchoPulseSequence.jsonld rename to instances/latest/terminologies/MRIPulsSequence/gradientEchoPulseSequence.jsonld index 221e8643a..bdec4d2b9 100644 --- a/instances/latest/terminologies/technique/gradientEchoPulseSequence.jsonld +++ b/instances/latest/terminologies/MRIPulsSequence/gradientEchoPulseSequence.jsonld @@ -2,8 +2,8 @@ "@context": { "@vocab": "https://openminds.ebrains.eu/vocab/" }, - "@id": "https://openminds.ebrains.eu/instances/technique/gradientEchoPulseSequence", - "@type": "https://openminds.ebrains.eu/controlledTerms/Technique", + "@id": "https://openminds.ebrains.eu/instances/MRIPulseSequence/gradientEchoPulseSequence", + "@type": "https://openminds.ebrains.eu/controlledTerms/MRIPulseSequence", "definition": "In magnetic resonance imaging, a 'gradient-echo pulse sequence' is a contrast generation technique that rapidly induces bulk changes in the spin magnetization of a sample by applying a series of carefully constructed pulses so that the change in the gradient of the magnetic field is maximized, trading contrast for speed (cf. [Hargreaves (2012)](https://doi.org/10.1002/jmri.23742)).", "description": null, "interlexIdentifier": null, diff --git a/instances/latest/terminologies/technique/spinEchoPulseSequence.jsonld b/instances/latest/terminologies/MRIPulsSequence/spinEchoPulseSequence.jsonld similarity index 78% rename from instances/latest/terminologies/technique/spinEchoPulseSequence.jsonld rename to instances/latest/terminologies/MRIPulsSequence/spinEchoPulseSequence.jsonld index 84229c21f..ee17b8b2a 100644 --- a/instances/latest/terminologies/technique/spinEchoPulseSequence.jsonld +++ b/instances/latest/terminologies/MRIPulsSequence/spinEchoPulseSequence.jsonld @@ -2,8 +2,8 @@ "@context": { "@vocab": "https://openminds.ebrains.eu/vocab/" }, - "@id": "https://openminds.ebrains.eu/instances/technique/spinEchoPulseSequence", - "@type": "https://openminds.ebrains.eu/controlledTerms/Technique", + "@id": "https://openminds.ebrains.eu/instances/MRIPulseSequence/spinEchoPulseSequence", + "@type": "https://openminds.ebrains.eu/controlledTerms/MRIPulseSequence", "definition": "In magnetic resonance imaging, a 'spin echo pulse sequence' is a contrast generation technique that induces bulk changes in the spin magnetization of a sample by applying sequential pulses of resonant electromagnetic waves at different angles (cf. [Fonseca (2013)](https://doi.org/10.5772/53693)).", "description": null, "interlexIdentifier": null,