issues Search Results · repo:obophenotype/xenopus-phenotype-ontology language:Makefile

Filter by

• • Code... (...)results
  • Issues129 (129)results
  • Pull requests40 (40)results
  • Discussions0 (0)results
  • Commits0 (0)results
  • Packages0 (0)results
  • Wikis2 (2)results

• State

  • Open
  • Closed

• Advanced

  • Owner
  • State
  • Close reason
  • Has linked pull request
  • Author
  • Assignee
  • Mentioned user
  • Mentioned team
  • Commenter
  • Involved user
  • Label
  • Milestone
  • Number of comments
  • Number of interactions
• Advanced search

Issues129 (129)

129 results

 (74 ms)

129 results

inobophenotype/xenopus-phenotype-ontology (press backspace or delete to remove)

Sort by: Best match

Filter

obophenotype/xenopus-phenotype-ontology

unsatisfiable classes

@matentzn I am attempting to run the release pipeline after adding new phenotype classes based on the most recent XAO additions. I am getting errors for 849 unsatisfiable classes in the ontology from the ...

• seger
·
• 6
·
• Opened 
  on Nov 7, 2024
·
• #169

obophenotype/xenopus-phenotype-ontology

XPO terms using obsolete GO classes

XPO: abnormal carbon dioxide homeostasis XPO_0141738 GO: obsolete carbon dioxide homeostasis GO_1903171 Replaced by: respiratory chemosensitivity GO_0160061 XPO: abnormal cellular hormone metabolic process ...

• seger
·
• Opened 
  on May 3, 2024
·
• #166

obophenotype/xenopus-phenotype-ontology

new pattern for 'premature' terms applied to all existing terms with 'delayed' BP 'delayed closure of XAOterm'

For new term requests, please provide the following information: ##premature metamorphosis, premature embryo development, premature gastrulation, premature closure of neural tube/ Mullein Duct/blastopre/branchial ...

• Xenbase2
·
• 1
·
• Opened 
  on Oct 4, 2023
·
• #163

obophenotype/xenopus-phenotype-ontology

xpoAnatomyTEMP terms

The following terms specified in xpoAnatomyTEMP.tsv need to be replaced by permanent classes based on DOSDP patterns. New patterns will be requested as needed. | | ID | TEMP term | PATO ID | PATO term ...

• seger
·
• Opened 
  on Feb 28, 2023
·
• #162

obophenotype/xenopus-phenotype-ontology

xpoAnatomyInLocationTEMP terms

The following terms specified in xpoAnatomyInLocationTEMP.tsv need to be replaced by permanent classes based on DOSDP patterns. | ID | TEMP term | | --- | --- | | XPO:0115988 | abnormally decreased length ...

• seger
·
• Opened 
  on Feb 28, 2023
·
• #161

obophenotype/xenopus-phenotype-ontology

Proposal for new pattern/terms related to membrane potentials.

Xenbase curators are interested in creating some terms related to membrane potentials. We would suggest a parent term abnormal membrane potential using the PATO term membrane potential (PATO:0001462) ...

• malcolmfisher103
·
• 2
·
• Opened 
  on Nov 30, 2022
·
• #160

obophenotype/xenopus-phenotype-ontology

Additional NBO based phenotypes

Preferred term labels abnormal cognitive behavior abnormal learning behavior abnormal memory behavior These should be added to the list in abnormalBehavior.tsv. | NBO term | NBO_term_label | | --- ...

• malcolmfisher103
·
• Opened 
  on Nov 23, 2022
·
• #159

obophenotype/xenopus-phenotype-ontology

Please attached xpo-base (all files) to release

It is ok to leave the base files checked git in as a way to review the release, but i usually recommend something slightly different: - [x] Only check in xpo-base.owl, and xpo.obo. These files are great ...

• matentzn
·
• 1
·
• Opened 
  on Sep 15, 2022
·
• #156

obophenotype/xenopus-phenotype-ontology

XPO is using LFS - which has been squashed by github for our organisation

The obophenotype organisation received a strange email informing us that due to our excessive usage of LFS 150% over the limit, LFS support is shut down. Looking at the settings, it seems that XPO is the ...

• matentzn
·
• 8
·
• Opened 
  on Aug 31, 2022
·
• #155

obophenotype/xenopus-phenotype-ontology

Cilium motility phenotypes refer to an obsolete GO class

The phenotypes based on these patterns... abnormalAbsenceOfMotilityOfCellularComponentInLocation abnormallyDecreasedMotilityOfCellularComponentInLocation abnormallyIncreasedMotilityOfCellularComponentInLocation ...

next release

• seger
·
• 10
·
• Opened 
  on Aug 19, 2022
·
• #154

Learn how you can use GitHub Issues to plan and track your work.

Save views for sprints, backlogs, teams, or releases. Rank, sort, and filter issues to suit the occasion. The possibilities are endless.Learn more about GitHub Issues

ProTip! 

Press the

/

key to activate the search input again and adjust your query.

Learn how you can use GitHub Issues to plan and track your work.

Save views for sprints, backlogs, teams, or releases. Rank, sort, and filter issues to suit the occasion. The possibilities are endless.Learn more about GitHub Issues

ProTip! 

Restrict your search to the title by using the in:title qualifier.