Skip to content

Fix syntax in OBO products #7

@althonos

Description

@althonos

Hi !

The current release contains several syntax errors that make the OBO products invalid considering the OBO format version 1.4 specification:

  • KEGG COMPOUND:XXX xrefs should be updated to KEGG_COMPOUND:XXX just like ChEBI did
  • Several cases of full-text book references (such as Bolton, B. (1994). Identificstion guide to the ant genera of the world. Cambridge, Mass., Harvard University PRess. pp.1-222.")
  • Invalid dbxrefs (such as The Pherobase: Database of Insect Phermones and Semiochemicals\:El-Sayed AM "http://www.pherobase.com")
  • Invalid links in dbxrefs (such as WP:\:http\://en.wikipedia.org/wiki/Semiochemical)
  • Invalid DOI format (e.g. XX:DOI\: 10.1086/522843)
  • Placeholder dbxrefs (XX:<new dbxref>)

cc @cmungall

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions