From 9582aa82eb278cd070bd41a355cc91a7ffc8b57b Mon Sep 17 00:00:00 2001
From: Xilin Chen <xilinc@med.umich.edu>
Date: Sun, 10 Dec 2023 17:41:24 -0500
Subject: [PATCH] publish the website on GitHub

---
 .Rbuildignore                  |  4 ++
 .github/.gitignore             |  1 +
 .github/workflows/pkgdown.yaml | 48 +++++++++++++++++++++
 .gitignore                     | 77 +++++++++++++++++-----------------
 DESCRIPTION                    |  1 +
 _pkgdown.yml                   |  4 +-
 6 files changed, 96 insertions(+), 39 deletions(-)
 create mode 100644 .github/.gitignore
 create mode 100644 .github/workflows/pkgdown.yaml

diff --git a/.Rbuildignore b/.Rbuildignore
index eee3899..ee82779 100644
--- a/.Rbuildignore
+++ b/.Rbuildignore
@@ -1,3 +1,7 @@
 ^obstinit\.Rproj$
 ^\.Rproj\.user$
 ^LICENSE\.md$
+^_pkgdown\.yml$
+^docs$
+^pkgdown$
+^\.github$
diff --git a/.github/.gitignore b/.github/.gitignore
new file mode 100644
index 0000000..2d19fc7
--- /dev/null
+++ b/.github/.gitignore
@@ -0,0 +1 @@
+*.html
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
new file mode 100644
index 0000000..ed7650c
--- /dev/null
+++ b/.github/workflows/pkgdown.yaml
@@ -0,0 +1,48 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/github-pages-deploy-action@v4.4.1
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs
diff --git a/.gitignore b/.gitignore
index 5f1099a..4e9f112 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,40 +1,41 @@
-# History files
-.Rhistory
-.Rapp.history
-
-# Session Data files
-.RData
-
-# User-specific files
-.Ruserdata
-
-# Example code in package build process
-*-Ex.R
-
-# Output files from R CMD build
-/*.tar.gz
-
-# Output files from R CMD check
-/*.Rcheck/
-
-# RStudio files
-.Rproj.user/
-
-# produced vignettes
-vignettes/*.html
-vignettes/*.pdf
-
-# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
-.httr-oauth
-
-# knitr and R markdown default cache directories
-*_cache/
-/cache/
-
-# Temporary files created by R markdown
-*.utf8.md
-*.knit.md
-
-.DS_Store
+# History files
+.Rhistory
+.Rapp.history
+
+# Session Data files
+.RData
+
+# User-specific files
+.Ruserdata
+
+# Example code in package build process
+*-Ex.R
+
+# Output files from R CMD build
+/*.tar.gz
+
+# Output files from R CMD check
+/*.Rcheck/
+
+# RStudio files
+.Rproj.user/
+
+# produced vignettes
+vignettes/*.html
+vignettes/*.pdf
+
+# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
+.httr-oauth
+
+# knitr and R markdown default cache directories
+*_cache/
+/cache/
+
+# Temporary files created by R markdown
+*.utf8.md
+*.knit.md
+
+.DS_Store
 
 obstinit.Rproj
+docs
diff --git a/DESCRIPTION b/DESCRIPTION
index e99a303..153862c 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -22,3 +22,4 @@ Imports:
 Suggests: 
     testthat (>= 3.0.0)
 Config/testthat/edition: 3
+URL: https://obianalysts-umich.github.io/obstinit/
diff --git a/_pkgdown.yml b/_pkgdown.yml
index 17931ae..f9e6632 100644
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@@ -1,2 +1,4 @@
+url: https://obianalysts-umich.github.io/obstinit/
 template:
-  bootstrap: 5
\ No newline at end of file
+  bootstrap: 5
+